New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	3903250 =	16 (0.620)	6 (0.260)	6/194	1.4	22.9%	coding (701/1965 nt)	h16_A3629	Hypothetical protein
	?	AM260479	3903344 =	26 (1.110)					coding (607/1965 nt)	h16_A3629	Hypothetical protein

GCCCGTGTGCTGGCCGAGCACCCTGACCACCCCGAGGCGCGCCGCCTGCGTGCACCGCTGCGCCACGGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260479/3903320‑3903250 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccacggcgtCACCGGCTGCGGGATCGAGCTCCAGCAGATGCGGATTGTCCAGGGCCACGCGGCCCAGGCAGACGCGCATCAGGGGCTCCACCGGAACGCCGGCGGCCTCGGCC  >  AM260479/3903344‑3903447                                                                                                                                                                                 GCCCGTGTGCTGGCCGAGCACCCTGACCACCCCGAGGCGCGCCGCCTGCGTGCACCGCTGCGCCACGGCGTCACCGGCTGCGGGATCGAGCTCCAGCAGATGCGGATTGTCCAGGGCCACGCGGCCCAGGCAGA                                           >  1:851389/1‑134                                    GGCGCGCCGCCTGCGTGCACCGCTGCGCCACGGCGTCACCGGCTGCGGGATCGAGCTCCAGCAGATG                                                                           >  1:716863/1‑67                                    GGCGCGCCGCCTGCGTGCACCGCTGCGCCACGGCGTCACCGGCTGCGGGATCGAGCTCCAGCAGATG                                                                           <  2:716863/67‑1                                          CCGCCTGCGTGCACCGCTGCGCCACGGCGTCACCGGCTGCGGGATCGAGCTCCAGCAGATGCGGATTGTCCAGGGCCACGCGGCCCAGGCAGACGCGCATCAGGGGCTCCACCGGAACGCCGGCGGCCTCGGCC  <  2:851389/134‑1                                             CCTGCGTGCACCGCTGCGCCACGGCGTCACCGGCTGCGGGATCGAGCTCCAGCAGATGCGGATTGTCCAGGGCCACGCGGCCCAGGCAGACGCGCAT                                    >  1:891030/1‑97                                             CCTGCGTGCACCGCTGCGCCACGGCGTCACCGGCTGCGGGATCGAGCTCCAGCAGATGCGGATTGTCCAGGGCCACGCGGCCCAGGCAGACGCGCAT                                    <  2:891030/97‑1                                                                                                                                                                                 GCCCGTGTGCTGGCCGAGCACCCTGACCACCCCGAGGCGCGCCGCCTGCGTGCACCGCTGCGCCACGGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260479/3903320‑3903250 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccacggcgtCACCGGCTGCGGGATCGAGCTCCAGCAGATGCGGATTGTCCAGGGCCACGCGGCCCAGGCAGACGCGCATCAGGGGCTCCACCGGAACGCCGGCGGCCTCGGCC  >  AM260479/3903344‑3903447

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.