New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	3903250 =	16 (0.620)	6 (0.260)	6/194	1.4	22.9%	coding (701/1965 nt)	h16_A3629	Hypothetical protein
	?	AM260479	3903344 =	26 (1.110)					coding (607/1965 nt)	h16_A3629	Hypothetical protein

GTGCTGTCGGCGCGCTGCGCCAGCTGGTGGCGCCAGGCCAGTTCGCGTACCTGGCTCTGCGGGTCGGGCACCTGGCGCAGGTAGAC‑‑‑CGCCAGGTCGTCCAGTGCCCCCTGGACGTCGCCCACGCCGTGGCGCAGCGGTGCACGCAGGCGGCGCGCCTCGGGGTGGTCAGGGTGCTCGGCCAGCACACGGGCGGCCTGGTCGGCGGCCACGGCGTCACCGGCTGCGGGATCGAGCTCCAGCAGAT  >  AM260479/3903130‑3903373                                                                                                                            |                                                                                                                            gTGCTGTCGGCGCGCTGCGCCAGCTGGTGGCGCCAGGCCAGTTCGCGTACCTGGCTCTGCGGGTCGGGCACCTGGCGCAGGTAGAC‑‑‑CGCCAGGTCGTCCAGTGCCCCCTGGACGTCGCCCACGCCGTGGCGCAg                                                                                                                >  1:376649/1‑134 (MQ=255)    cTGTCGGCGCGCTGCGCCAGCTGGTGGCGCCAGGCCAGTTCGCGTACCTGGCTCTGCGGGTCGGGCACCTGGC‑‑‑GGTCTACCTGCGCCAGGTCGTCCAGTGCCCCCTGGACGTCGCCCACGCCGTGGCGCAGCgg                                                                                                             <  1:253225/134‑1 (MQ=255)           cgcgcTGCGCCAGCTGGTGGCGCCAGGCCAGTTCGCGTACCTGGCTCTGCGGGTCGGGCACCTGGCGCAGGTAGAC‑‑‑CGCCAGGTCGTCCAGTGCCCCCTGGACGTCGCCCAc                                                                                                                            >  1:105060/1‑112 (MQ=255)           cgcgcTGCGCCAGCTGGTGGCGCCAGGCCAGTTCGCGTACCTGGCTCTGCGGGTCGGGCACCTGGCGCAGGTAGAC‑‑‑CGCCAGGTCGTCCAGTGCCCCCTGGACGTCGCCCAc                                                                                                                            <  2:105060/112‑1 (MQ=255)              gcTGCGCCAGCTGGTGGCGCCAGGCCAGTTCGCGTACCTGGCTCTGCGGGTCGGGCACCTGGCGCAGGTAGAC‑‑‑CGCCAGGTCGTCCAGTGCCCCCTGGACGTCGCCCACGCCGTGGCGCAGCGGTGCACGCAgg                                                                                                   >  2:319789/1‑134 (MQ=255)               cTGCGCCAGCTGGTGGCGCCAGGCCAGTTCGCGTACCTGGCTCTGCGGGTCGGGCACCTGGCGCAGGTAGAC‑‑‑CGCCAGGTCGTCCAGTGCCCCCTGGACGTCGCCCACGCCGTGGCGCAGCGGTGCACGCAggc                                                                                                  >  1:526635/1‑134 (MQ=255)                  cgcCAGCTGGTGGCGCCAGGCCAGTTCGCGTACCTGGCTCTGCGGGTCGGGCACCTGGCGCAGGTAGAC‑‑‑CGCCAGGTCGTCCAGTGCCCCCTGGACGTCGCCCACGCCGTGGCGCAGCGGTGCACGCAggcg                                                                                                 <  1:319789/132‑1 (MQ=255)                    ggccgaggccgccggcgttccggtggagcccctgatgcgcgtctgcctgggccgcgtggccctggacaatccgcatctgctggagctcgatcccgcagccggtgACGCCGTGGCGCAGCGGTGCACGCAggcgg                                                                                                <  2:851389‑M1/30‑1 (MQ=255)                                                   cTGGCTCTGCGGGTCGGGCACCTGGCGCAGGTAGAC‑‑‑CGCCAGGTCGTCCAGTGCCCCCTGGACGTCGCCCACGCCGt                                                                                                                       >  1:553566/1‑77 (MQ=255)                                                   cTGGCTCTGCGGGTCGGGCACCTGGCGCAGGTAGAC‑‑‑CGCCAGGTCGTCCAGTGCCCCCTGGACGTCGCCCACGCCGt                                                                                                                       <  2:553566/77‑1 (MQ=255)                                                      atgcgcgtctgcctgggccgcgtggccctggacaatccgcatctgctggagctcgatcccgcagccggtgACGCCGTGGCGCAGCGGTGCACGCAgg                                                                                                   <  2:891030‑M1/27‑1 (MQ=255)                                                      atgcgcgtctgcctgggccgcgtggccctggacaatccgcatctgctggagctcgatcccgcagccggtgACGCCGTGGCGCAGCGGTGCACGCAgg                                                                                                   >  1:891030‑M1/71‑97 (MQ=255)                                                             tctgcctgggccgcgtggccctggacaatccgcatctgctggagctcgatcccgcagccggtgACGCCGTGGCGCAGCGGTGCACGCAGGCGGCGCGCCTCGGGGTGGTCAGGGTGCTCGGCCAGCACACGggc                                                       >  1:851389‑M1/64‑134 (MQ=255)                                                                           gcgcAGGTAGAC‑‑‑CGCCAGGTCGTCCAGTGCCCCCTGGACGTCGCCCACGCCGTGGCGCAGCGGTGCACGCAGGCGGCGCGCCTCGGGGTGGTCAGGGTGCTCGGCCAGCACACGGGCGGCCTGGTCggcggc                                        <  2:959599/132‑1 (MQ=255)                                                                                 gTAGAC‑‑‑CGCCAGGTCGTCCAGTGCCCCCTGGACGTCGCCCACGCCGTGGCGCAGCGGTGCACGCAGGCGGCGCGCCTCGGGGTGGTCAGGGTGCTCGGCCAGCACACGGGCGGCCTGGTCGGCGGCCACGGCGt                                <  2:376649/134‑1 (MQ=255)                                                                                             catctgctggagctcgatcccgcagccggtgACGCCGTGGCGCAGCGGTGCACGCAGGCGGCGCGcc                                                                                          <  2:716863‑M1/36‑1 (MQ=255)                                                                                             catctgctggagctcgatcccgcagccggtgACGCCGTGGCGCAGCGGTGCACGCAGGCGGCGCGcc                                                                                          >  1:716863‑M1/32‑67 (MQ=255)                                                                                               ggTCGTCCAGTGCTCCCTGGACGTCGCCCACGCCGTGGCGCAGCGGTGCACGCAGGCGGCGCGCCTCGGGGTGGTCAGGGTGCTCGGCCAGCACACGGGCGGCCTGGTCGGCGGCCACGGCGTCACCGGCTGCg                     <  2:309916/134‑1 (MQ=255)                                                                                                                  gACGTCGCCCACGCCGTGGCGCAGCGGTGCACGCAGGCGGCGCGCCTCGGGGTGGTCAGGGTGCTCGGCCAGCACACGGGCGGCCTGGTCGGCGGCCACGGCGTCACCGGCTGCGGGATCGAGCTCCAGCAGAt  >  2:833536/1‑134 (MQ=255)                                                                                                                  gACGTCGCCCACGCCGTGGCGCAGCGGTGCACGCAGGCGGCGCGCCTCGGGGTGGACAGGGTGGTCGGCCAGCACACGGGCGGGCTGGTCGGCGGCCACGGCGGCACCGGCTGCGGGATCGCGCGCCAGCCGAt  >  2:814480/1‑134 (MQ=255)                                                                                                                           cACGCCGTGGCGCAGCGGTGCACGCAGGCGGCGCGCCTCGGGGTGGTCAGGGTGCTCGGCCAGCACACGGGCGGCCTGGTCGGCGGCCACGGCGTCACCGGCTGCg                     <  2:743154/106‑1 (MQ=255)                                                                                                                           cACGCCGTGGCGCAGCGGTGCACGCAGGCGGCGCGCCTCGGGGTGGTCAGGGTGCTCGGCCAGCACACGGGCGGCCTGGTCGGCGGCCACGGCGTCACCGGCTGCg                     >  1:743154/1‑106 (MQ=255)                                                                                                                            |                                                                                                                            GTGCTGTCGGCGCGCTGCGCCAGCTGGTGGCGCCAGGCCAGTTCGCGTACCTGGCTCTGCGGGTCGGGCACCTGGCGCAGGTAGAC‑‑‑CGCCAGGTCGTCCAGTGCCCCCTGGACGTCGCCCACGCCGTGGCGCAGCGGTGCACGCAGGCGGCGCGCCTCGGGGTGGTCAGGGTGCTCGGCCAGCACACGGGCGGCCTGGTCGGCGGCCACGGCGTCACCGGCTGCGGGATCGAGCTCCAGCAGAT  >  AM260479/3903130‑3903373

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.