| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | 3903250 = | 16 (0.620) | 6 (0.260) | 6/194 | 1.4 | 22.9% | coding (701/1965 nt) | h16_A3629 | Hypothetical protein |
| ? | AM260479 | 3903344 = | 26 (1.110) | coding (607/1965 nt) | h16_A3629 | Hypothetical protein | |||||
GGTCGTCCAGTGCCCCCTGGACGTCGCCCACGCCGTGGCGCAGCGGTGCACGCAGGCGGCGCGCCTCGGGGTGGTCAGGGTGCTCGGCCAGCACACGGGCGGCCTGGTCGGCGGCCACGGCGTCACCGGCTGCGGGATCGAGCTCCAGCAGATGCGGATTGTCCAGGGCCACGCGGCCCAGGCAGACGCGCATCAGGGGCTCCACCGGAACGCCGGCGGCCTCGGCCCGGGCGATGTAGTCCGT > AM260479/3903221‑3903464 | ggTCGTCCAGTGCTCCCTGGACGTCGCCCACGCCGTGGCGCAGCGGTGCACGCAGGCGGCGCGCCTCGGGGTGGTCAGGGTGCTCGGCCAGCACACGGGCGGCCTGGTCGGCGGCCACGGCGTCACCGGCTGCg < 2:309916/134‑1 (MQ=255) gACGTCGCCCACGCCGTGGCGCAGCGGTGCACGCAGGCGGCGCGCCTCGGGGTGGTCAGGGTGCTCGGCCAGCACACGGGCGGCCTGGTCGGCGGCCACGGCGTCACCGGCTGCGGGATCGAGCTCCAGCAGAt > 2:833536/1‑134 (MQ=255) gACGTCGCCCACGCCGTGGCGCAGCGGTGCACGCAGGCGGCGCGCCTCGGGGTGGACAGGGTGGTCGGCCAGCACACGGGCGGGCTGGTCGGCGGCCACGGCGGCACCGGCTGCGGGATCGCGCGCCAGCCGAt > 2:814480/1‑134 (MQ=255) cACGCCGTGGCGCAGCGGTGCACGCAGGCGGCGCGCCTCGGGGTGGTCAGGGTGCTCGGCCAGCACACGGGCGGCCTGGTCGGCGGCCACGGCGTCACCGGCTGCg < 2:743154/106‑1 (MQ=255) cACGCCGTGGCGCAGCGGTGCACGCAGGCGGCGCGCCTCGGGGTGGTCAGGGTGCTCGGCCAGCACACGGGCGGCCTGGTCGGCGGCCACGGCGTCACCGGCTGCg > 1:743154/1‑106 (MQ=255) gcAGCGGTGCACGCAGGCGGCGCGCCTCGGGGTGGTCAGGGTGCTCGGCCAGCACACGGGCGGCCTGGTCGGCGGCCACGGCGTCACCGGCTGCGGGATCGAGCTCCAGCAGATGCGGATTGTCCAGGGCCAcg < 1:833536/134‑1 (MQ=255) cAGCGGTGCACGCAGGCGGCGCGCCTCGGGGTGGTCAGGGTGCTCGGCCAGCACACGGGCGGCCTGGTCGGCGGCCACGGCGTCACCGGCTGCGGGATCGAGCTCCAGCAGATGCGGATTGTCCAGGGCCAcgc > 2:958534/1‑134 (MQ=255) cAGCGGTGCACGCAGGCGGCGCGCCTCGGGGTGGTCAGGGTGCTCGGCCAGCACACGGGCGGCCTGGTCGGCGGCCACGGCGTCACCGGCTGCGGGATCGAGCTCCAGCAGATGCGGATTGTCCAGGGCCAcgc > 1:703716/1‑134 (MQ=255) gTGCACGCAGGCGGCGCGCCTCGGGGTGGTCAGGGTGCTCGGCCAGCATACGGGCGGCCTGGTCGGCGGCCACGGCGTCACCGGCTGCGGGATCGAGCTCCAGCAGATg < 2:933779/109‑1 (MQ=255) gTGCACGCAGGCGGCGCGCCTCGGGGTGGTCAGGGTGCTCGGCCAGCACACGGGCGGCCTGGTCGGCGGCCACGGCGTCACCGGCTGCGGGATCGAGCTCCAGCAGATg > 1:933779/1‑109 (MQ=255) cGCAGGCGGCGCGCCTCGGGGTGGTCAGGGTGCTCGGCCAGCACACGGGCGGCCTGGTCGGCGGCCACGGCGTCACCGGCTGCGGGATCGAGCTCCAGCAGATGCGGATTGTCCAGGGCCACGCGGCCCAGGCa < 2:703716/134‑1 (MQ=255) gcccgtgtgctggccgagcaccctgaccaccccgaggcgcgccgcctgcgtgcaccgctgcgccacggcgtCACCGGCTGCGGGATCGAGCTCCAGCAGATGCGGATTGTCCAGGGCCACGCGGCCCAGGCAGa > 1:851389‑M2/72‑134 (MQ=255) ggcgCGCCTCGGGGTGGTCAGGGTGCTCGGCCAGCACACGGGCGGCCTGGTCGGCGGCCACGGCGTCACCGGCTGCGGGATCGAGCTCCAGCAGATg > 1:281717/1‑97 (MQ=255) ggcgCGCCTCGGGGTGGTCAGGGTGCTCGGCCAGCACACGGGCGGCCTGGTCGGCGGCCACGGCGTCACCGGCTGCGGGATCGAGCTCCAGCAGATg < 2:281717/97‑1 (MQ=255) ggcgCGCCTCGGGGTGGTCAGGGTGCTCGGCCAGCACACGGGCGGCCTGGTCGGCGGCCACGGCGTCACCGGCTGCGGGATCGAGCTCCAGCAGATGCGGATTGTCCAGGGCCACGCGGCCCAGGCAGAcgcg > 1:676780/1‑133 (MQ=255) gcgcCTCGGGGTGGTCAGGGTGCTCGGCCAGCACACGGGCGGCCTGGTCGGCGGCCACGGCGTCACCGGCTGCGGGATCGAGCTCCAGCAGATg > 1:517767/1‑94 (MQ=255) gcgcCTCGGGGTGGTCAGGGTGCTCGGCCAGCACACGGGCGGCCTGGTCGGCGGCCACGGCGTCACCGGCTGCGGGATCGAGCTCCAGCAGATg < 2:517767/94‑1 (MQ=255) ggTGCTCGGCCAGCACACGGGCGGCCTGGTCGGCGGCCACGGCGTCACCGGCTGCGGGATCGAGCTCCAGCAGATGCGGATTGTCCAGGGc > 1:152081/1‑91 (MQ=255) ggTGCTCGGCCAGCACACGGGCGGCCTGGTCGGCGGCCACGGCGTCACCGGCTGCGGGATCGAGCTCCAGCAGATGCGGATTGTCCAGGGc < 2:152081/91‑1 (MQ=255) ggcgcgccgcctgcgtgcaccgctgcgccacggcgtCACCGGCTGCGGGATCGAGCTCCAGCAGATg > 1:716863‑M2/37‑67 (MQ=255) ggcgcgccgcctgcgtgcaccgctgcgccacggcgtCACCGGCTGCGGGATCGAGCTCCAGCAGATg < 2:716863‑M2/31‑1 (MQ=255) ccAGCACACGGGCGGCCTGGTCGGCGGCCACGGCGTCACCGGCTGCGGGATCGAGCTCCAGCAGATGCGGATTGTCCAGGGc > 2:618983/1‑82 (MQ=255) ccAGCACACGGGCGGCCTGGTCGGCGGCCACGGCGTCACCGGCTGCGGGATCGAGCTCCAGCAGATGCGGATTGTCCAGGGc < 1:618983/82‑1 (MQ=255) acacGGGCGGCCTGGTCGGCGGCCACGGCGTCACCGGCTGCGGGATCGAGCTCCAGCAGATg > 2:293778/1‑62 (MQ=255) acacGGGCGGCCTGGTCGGCGGCCACGGCGTCACCGGCTGCGGGATCGAGCTCCAGCAGATg < 1:293778/62‑1 (MQ=255) ccgcctgcgtgcaccgctgcgccacggcgtCACCGGCTGCGGGATCGAGCTCCAGCAGATGCGGATTGTCCAGGGCCACGCGGCCCAGGCAGACGCGCATCAGGGGCTCCACCGGAACGCCGGCGGCCTCGGcc < 2:851389‑M2/104‑1 (MQ=255) cctgcgtgcaccgctgcgccacggcgtCACCGGCTGCGGGATCGAGCTCCAGCAGATGCGGATTGTCCAGGGCCACGCGGCCCAGGCAGACGCGCAt < 2:891030‑M2/70‑1 (MQ=255) cctgcgtgcaccgctgcgccacggcgtCACCGGCTGCGGGATCGAGCTCCAGCAGATGCGGATTGTCCAGGGCCACGCGGCCCAGGCAGACGCGCAt > 1:891030‑M2/28‑97 (MQ=255) gcCTGGTCGGCGGCCACGGCGTCACCGGCTGCGGGATCGAGCTCCAGCAGATGCGGATTGTCCAGGGCCACGCGGCCCAGGCCGACGCGCATCAGGGGCTCCACCGGAACGCCGGCGGCCTCg > 1:379411/1‑123 (MQ=255) gcCTGGTCGGCGGCCACGGCGTCACCGGCTGCGGGATCGAGCTCCAGCAGATGCGGATTGTCCAGGGCCACGCGGCCCAGGCAGACGCGCATCAGGGGCTCCACCGGAACGCCGGCGGCCTCg < 2:379411/123‑1 (MQ=255) gTCGGCGGCCACGGCGTCACCGGCTGCGGGATCGAGCTCCAGCAGATGCGGATTGTCCAGGGCCACGCGGCCCAGGCAGACGCGCATCAGGGGCTCCACCGGAACGCCGGCGGCCTCGGCCCGGGCGATGTa < 1:814480/132‑1 (MQ=255) gcggcCACGGCGTCACCGGCTGCGGGATCGAGCTCCAGCAGATGCGGATTGTCCAGGGCCACGCGGCCCAGGCAGACGCGCATCAGGGGCTCCACCGGAACGCCGGCGGCCTCGGCCCGGGCGATGTAGTCCGt > 1:858576/1‑134 (MQ=255) | GGTCGTCCAGTGCCCCCTGGACGTCGCCCACGCCGTGGCGCAGCGGTGCACGCAGGCGGCGCGCCTCGGGGTGGTCAGGGTGCTCGGCCAGCACACGGGCGGCCTGGTCGGCGGCCACGGCGTCACCGGCTGCGGGATCGAGCTCCAGCAGATGCGGATTGTCCAGGGCCACGCGGCCCAGGCAGACGCGCATCAGGGGCTCCACCGGAACGCCGGCGGCCTCGGCCCGGGCGATGTAGTCCGT > AM260479/3903221‑3903464 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |