| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260480 | 128407 = | 16 (0.580) | 4 (0.160) | 4/196 | 2.0 | 20.2% | coding (823/1728 nt) | h16_B0110 | ABC‑type transporter, duplicated permease domains |
| ? | AM260480 | 128449 = | 17 (0.680) | coding (865/1728 nt) | h16_B0110 | ABC‑type transporter, duplicated permease domains | |||||
GGCCGCGCTCGGGCGCCGGCACATACACCTGCGCGCGGCTGCCCATCTGTGTGCGCTGGCGCTGCTGCATTGCCATGTCCACGGCAAAGGTCAGCAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260480/128506‑128407‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcagcgcCAGCGCACACAGATGGGCAGCCGCGCGCAGGTGTATGTGCCGGCGCCCGAGCGCGGCCGCGACGGCGCGTGCCTGCTGCTGGTGGCGCTGGTCAGTGCCGCGCTGCTGGCAGTGATCGCCACCGCGCT > AM260480/128449‑128576 GGCCGCGCTCGGGCGCCGGCACATACACCTGCGCGCGGCTGCCCATCTGTGTGCGCTGGCGCTGCTGCATTGCCATGTCCACGGCAAAGGTCAGC > 1:95794/1‑95GGCCGCGCTCGGGCGCCGGCACATACACCTGCGCGCGGCTGCCCATCTGTGTGCGCTGGCGCTGCTGCATTGCCATGTCCACGGCAAAGGTCAGC < 2:95794/95‑1 GCGCTGCTGCATTGCCATGTCCACGGCAAAGGTCAGCAGCGCCAGCGCACACAGATGGGCAGCCGCGCGCAGGTGTATGTGCCGGCGCCCGAGCGCGGCCGCGACGGCGCGTGCCTGCTGCTGGTGGCGC < 1:848668/130‑1 GCGCTGCTGCATTGCCATGTCCACGGCAAAGGTCAGCAGCGCCAGCGCACACAGATGGGCAGCCGCGCGCAGGTGTATGTGCCGGCGCCCGAGCGCGGCCGCGACGGCGCGTGCCTGCTGCTGGTGGCGC > 2:848668/1‑130 CGGCAAAGGTCAGCAGCGCCAGCGCACACAGATGGGCAGCCGCGCGCAGGTGTATGTGCCGGCGCCCGAGCGCGGCCGCGACGGCGCGTGCCTGCTGCTGGTGGCGCTGGTCAGTGCCGCGCTGCT > 1:934913/1‑126 CGGCAAAGGTCAGCAGCGCCAGCGCACACAGATGGGCAGCCGCGCGCAGGTGTATGTGCCGGCGCCCGAGCGCGGCCGCGACGGCGCGTGCCTGCTGCTGGTGGCGCTGGTCAGTGCCGCGCTGCT < 2:934913/126‑1 GCAGCGCCAGCGCACACAGATGGGCAGCCGCGCGCAGGTGTATGTGCCGGCGCCCGAGCGCGGCCGCGACGGCGCGTGCCTGCTGCTGGTGGCGCTGGTCAGTG > 1:679582/1‑104 GCAGCGCCAGCGCACACAGATGGGCAGCCGCGCGCAGGTGTATGTGCCGGCGCCCGAGCGCGGCCGCGACGGCGCGTGCCTGCTGCTGGTGGCGCTGGTCAGTG < 2:679582/104‑1 CAGCGCCAGCGCACACAGATGGGCAGCCGCGCGCAGGTGTATGTGCCGGCGCCCGAGCGCGGCCGCGACGGCGCGTGCCTGCTGCTGGTGGCGCTGGTCAGTGCCGCGCTGCTGGCAGTGATCGCCACCGCGCT > 1:531140/1‑134 GGCCGCGCTCGGGCGCCGGCACATACACCTGCGCGCGGCTGCCCATCTGTGTGCGCTGGCGCTGCTGCATTGCCATGTCCACGGCAAAGGTCAGCAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260480/128506‑128407‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcagcgcCAGCGCACACAGATGGGCAGCCGCGCGCAGGTGTATGTGCCGGCGCCCGAGCGCGGCCGCGACGGCGCGTGCCTGCTGCTGGTGGCGCTGGTCAGTGCCGCGCTGCTGGCAGTGATCGCCACCGCGCT > AM260480/128449‑128576 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |