New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	= 777301	10 (0.360)	4 (0.150)	4/206	2.1	30.0%	coding (4240/4659 nt)	rtxA2	RTX toxin exported protein
	?	AM260480	= 777320	9 (0.340)					coding (4259/4659 nt)	rtxA2	RTX toxin exported protein

CAGAGCGGCAGCCCCACCACGGCAGGCCCGGGCGTGACTGGCCTCGGTGCCGACAGCTACAGCAACATGGAAGGCGTCATCGGCTCCGCCTTCAACGACAACCTCACCGGCTCTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260480/777184‑777301 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgCCACGCAGCACGTCGTTGCCGGCAGAGCCGGTGAG  <  AM260480/777320‑777286                                                                                                                                                           CAGAGCGGCAGCCCCACCACGGCAGGCCCGGGCGTGACTGGCCTCGGTGCCGACAGCTACAGCAACATGGAAGGCGTCATCGGCTCCGCCTTCAACGACAACCTCACCGGCTCTGCCGCCACGCAGCACGTCGT                     >  1:798529/1‑134                    CGGCAGGCCCGGGCGTGACTGGCCTCGGTGCCGACAGCTACAGCAACATGGAAGGCGTCATCGGCTCCGCCTTCAACGACAACCTCACCGGCTCTGCCGCCACGCAGCACGTCGTTGCCGGCAGAGCCGGTGAG  <  2:798529/134‑1                                             CGGTGCCGACAGCTACAGCAACATGGAAGGCGTCATCGGCTCCGCCTTCAACGACAACCTCACCGGCTCTGCCGCCACGCAGCACGTCGTTGCCGGCAGAGCCG       <  1:598968/104‑1                                             CGGTGCCGACAGCTACAGCAACATGGAAGGCGTCATCGGCTCCGCCTTCAACGACAACCTCACCGGCTCTGCCGCCACGCAGCACGTCGTTGCCGGCAGAGCCG       >  2:598968/1‑104                                                                                                                                                           CAGAGCGGCAGCCCCACCACGGCAGGCCCGGGCGTGACTGGCCTCGGTGCCGACAGCTACAGCAACATGGAAGGCGTCATCGGCTCCGCCTTCAACGACAACCTCACCGGCTCTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260480/777184‑777301 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgCCACGCAGCACGTCGTTGCCGGCAGAGCCGGTGAG  <  AM260480/777320‑777286

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.