New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	= 777301	10 (0.360)	4 (0.150)	4/206	2.1	30.0%	coding (4240/4659 nt)	rtxA2	RTX toxin exported protein
	?	AM260480	= 777320	9 (0.340)					coding (4259/4659 nt)	rtxA2	RTX toxin exported protein

TGTTCACGCTGACGCAGAGCGGCAGCCCCACCACGGCAGGCCCGGGCGTGACTGGCCTCGGTGCCGACAGCTACAGCAACATGGAAGGCGTCATCGGCTCCGCCTTCAACGACAACCTCACCGGCTCTGCCGGCAACGACGTGCTGCGTGGCGGCGCGGGCAACGACGTGTTGGTCGGAGGCGCCGGCAACGACGTGTTGACCGGCGGCGCCGGCGCCGACACACTGACCGGCGGCAATGGCAGCGACACCTTTCGCTTTCTGCG  >  AM260480/777170‑777434                                                                                                                                    |                                                                                                                                      tgtTCACGCTGACGCAGAGCGGCAGCCCCACCACGGCAGGCCCGGGCGTGACTGGCCTCGGTGCCGACAGCTACAGCAACATGGAAGGCGTCATCGGCTCCGCCTTCAACGACAACCTCACCGGCTCTGCCgg                                                                                                                                      <  1:242598/133‑1 (MQ=255)     cACGCTGACGCAGAGCGGCAGCCCCACCACGGCAGGCCCGGGCGTGACTGGCCTCGGTGCCGACAGCTACAGCAACATGGAAGGCGTCATCGGCTCCGCCTTCAACGACAACCTCACCGGCTCTGCCGGCAac                                                                                                                                  <  2:288476/133‑1 (MQ=255)             cGCAGAGCGGCAGCCCCACCACGGCAGGCCCGGGCGTGACTGGCCTCGGTGCCGACAGCTACAGCAACATGGAAGGCGTCATCGGCTCCGCCTTCAACGACAACCTCACCGGCTCTGCCGGCAACGACGtgctg                                                                                                                         <  2:652127/134‑1 (MQ=255)               cAGAGCGGCAGCCCCACCACGGCAGGCCCGGGCGTGACTGGCCTCGGTGCCGACAGCTACAGCAACATGGAAGGCGTCATCGGCTCCGCCTTCAACGACAACCTCACCGGCTCTGCCGccacgcagcacgtcgt                                                                                                                       >  1:798529‑M1/1‑118 (MQ=255)                                  cGGCAGGCCCGGGCGTGACTGGCCTCGGTGCCGACAGCTACAGCAACATGGAAGGCGTCATCGGCTCCGCCTTCAACGACAACCTCACCGGCTCTGCCGccacgcagcacgtcgttgccggcagagccggtgag                                                                                                    <  2:798529‑M1/134‑36 (MQ=255)                                         cccGGGCGTGACTGGCCTCGGTGCCGACAGCTACAGCAACATGGAAGGCGTCATCGGCTCCGCCTTCAACGACAACCTCACCGGCTCTGCCGGCAACGACGTGCTGCGTGGCGGCGCGGGCAACGACGTGTTgg                                                                                             >  2:257972/1‑134 (MQ=255)                                                           cGGTGCCGACAGCTACAGCAACATGGAAGGCGTCATCGGCTCCGCCTTCAACGACAACCTCACCGGCTCTGCCGccacgcagcacgtcgttgccggcagagccg                                                                                                         <  1:598968‑M1/104‑31 (MQ=255)                                                           cGGTGCCGACAGCTACAGCAACATGGAAGGCGTCATCGGCTCCGCCTTCAACGACAACCTCACCGGCTCTGCCGccacgcagcacgtcgttgccggcagagccg                                                                                                         >  2:598968‑M1/1‑74 (MQ=255)                                                                                                             aCGACAACCTCACCGGCTCTGCCGGCAACGACGTGCTGCGTGGCGGCGCGGGCAACGACGTGTTGGTCGGAGGCGCCGGCAACGACGTGTTGACCGGCGGCGCCGGCGCCGACACACTGACCGGCGGCAATGGc                         <  1:257972/134‑1 (MQ=255)                                                                                                                     cTCACCGGCTCTGCCGGCAACGACGTGCTGCGTGGcggcagagccggtgaggttgtcgttgaaggcggagccgatgacgccttccatgttgctgtagctgtcggcaccgaggccagtcacgcccgggcctgccg                 <  2:798529‑M2/134‑100 (MQ=255)                                                                                                                        aCCGGCTCTGCCGGCAACGACGTGCTGCGTGGCGGCGCGGGCAACGACGTGTTGGTCGGAGGCGCCGGCAACGACGTGTTGACCGGCGGCGCCGGCGCCGACACACTGACCGGCGGCAATGGCAGCGACACCtt              >  1:84762/1‑134 (MQ=255)                                                                                                                          cGGCTCTGCCGGCAACGACGTGCTGCGTGGcggcagagccggtgaggttgtcgttgaaggcggagccgatgacgccttccatgttgctgtagctgtcggcaccg                                          <  1:598968‑M2/104‑75 (MQ=255)                                                                                                                          cGGCTCTGCCGGCAACGACGTGCTGCGTGGcggcagagccggtgaggttgtcgttgaaggcggagccgatgacgccttccatgttgctgtagctgtcggcaccg                                          >  2:598968‑M2/1‑30 (MQ=255)                                                                                                                              tctGCCGGCAACGACGTGCTGCGTGGCGGCGCGGGCAACGACGTGTTGGTCGGAGGCGCCGGCAACGACGTGTTGACCGGCGGCGCCGGCGCCGACACACTGACCGGCGGCAATGGCAGCGACACCTTTCGCtt        >  1:253619/1‑134 (MQ=255)                                                                                                                                    ggCAACGACGTGCTGCGTGGCGGCGCGGGCAACGACGTGTTGGTCGGa                                                                                        >  2:130965/1‑48 (MQ=255)                                                                                                                                    ggCAACGACGTGCTGCGTGGCGGCGCGGGCAACGACGTGTTGGTCGGa                                                                                        <  1:130965/48‑1 (MQ=255)                                                                                                                                    ggCAACGACGTGCTGCGTGGCGGCGCGGGCAACGACGTGTTGGTCGGAGGCGCCGGCAACGACGTGTTGACCGGCGGCGCCGGCGCCGACACACTGACCGGCGGCAATGGCAGCGACACCTTTCGCTTTCTgcg  >  1:366280/1‑134 (MQ=255)                                                                                                                                    |                                                                                                                                      TGTTCACGCTGACGCAGAGCGGCAGCCCCACCACGGCAGGCCCGGGCGTGACTGGCCTCGGTGCCGACAGCTACAGCAACATGGAAGGCGTCATCGGCTCCGCCTTCAACGACAACCTCACCGGCTCTGCCGGCAACGACGTGCTGCGTGGCGGCGCGGGCAACGACGTGTTGGTCGGAGGCGCCGGCAACGACGTGTTGACCGGCGGCGCCGGCGCCGACACACTGACCGGCGGCAATGGCAGCGACACCTTTCGCTTTCTGCG  >  AM260480/777170‑777434

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.