New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260480 = 77730110 (0.360)4 (0.150) 4/206 2.1 30.0% coding (4240/4659 nt) rtxA2 RTX toxin exported protein
?AM260480 = 777320 9 (0.340)coding (4259/4659 nt) rtxA2 RTX toxin exported protein

TGTTCACGCTGACGCAGAGCGGCAGCCCCACCACGGCAGGCCCGGGCGTGACTGGCCTCGGTGCCGACAGCTACAGCAACATGGAAGGCGTCATCGGCTCCGCCTTCAACGACAACCTCACCGGCTCTGCCGGCAACGACGTGCTGCGTGGCGGCGCGGGCAACGACGTGTTGGTCGGAGGCGCCGGCAACGACGTGTTGACCGGCGGCGCCGGCGCCGACACACTGACCGGCGGCAATGGCAGCGACACCTTTCGCTTTCTGCG  >  AM260480/777170‑777434
                                                                                                                                   |                                                                                                                                     
tgtTCACGCTGACGCAGAGCGGCAGCCCCACCACGGCAGGCCCGGGCGTGACTGGCCTCGGTGCCGACAGCTACAGCAACATGGAAGGCGTCATCGGCTCCGCCTTCAACGACAACCTCACCGGCTCTGCCgg                                                                                                                                      <  1:242598/133‑1 (MQ=255)
    cACGCTGACGCAGAGCGGCAGCCCCACCACGGCAGGCCCGGGCGTGACTGGCCTCGGTGCCGACAGCTACAGCAACATGGAAGGCGTCATCGGCTCCGCCTTCAACGACAACCTCACCGGCTCTGCCGGCAac                                                                                                                                  <  2:288476/133‑1 (MQ=255)
            cGCAGAGCGGCAGCCCCACCACGGCAGGCCCGGGCGTGACTGGCCTCGGTGCCGACAGCTACAGCAACATGGAAGGCGTCATCGGCTCCGCCTTCAACGACAACCTCACCGGCTCTGCCGGCAACGACGtgctg                                                                                                                         <  2:652127/134‑1 (MQ=255)
              cAGAGCGGCAGCCCCACCACGGCAGGCCCGGGCGTGACTGGCCTCGGTGCCGACAGCTACAGCAACATGGAAGGCGTCATCGGCTCCGCCTTCAACGACAACCTCACCGGCTCTGCCGccacgcagcacgtcgt                                                                                                                       >  1:798529‑M1/1‑118 (MQ=255)
                                 cGGCAGGCCCGGGCGTGACTGGCCTCGGTGCCGACAGCTACAGCAACATGGAAGGCGTCATCGGCTCCGCCTTCAACGACAACCTCACCGGCTCTGCCGccacgcagcacgtcgttgccggcagagccggtgag                                                                                                    <  2:798529‑M1/134‑36 (MQ=255)
                                        cccGGGCGTGACTGGCCTCGGTGCCGACAGCTACAGCAACATGGAAGGCGTCATCGGCTCCGCCTTCAACGACAACCTCACCGGCTCTGCCGGCAACGACGTGCTGCGTGGCGGCGCGGGCAACGACGTGTTgg                                                                                             >  2:257972/1‑134 (MQ=255)
                                                          cGGTGCCGACAGCTACAGCAACATGGAAGGCGTCATCGGCTCCGCCTTCAACGACAACCTCACCGGCTCTGCCGccacgcagcacgtcgttgccggcagagccg                                                                                                         <  1:598968‑M1/104‑31 (MQ=255)
                                                          cGGTGCCGACAGCTACAGCAACATGGAAGGCGTCATCGGCTCCGCCTTCAACGACAACCTCACCGGCTCTGCCGccacgcagcacgtcgttgccggcagagccg                                                                                                         >  2:598968‑M1/1‑74 (MQ=255)
                                                                                                            aCGACAACCTCACCGGCTCTGCCGGCAACGACGTGCTGCGTGGCGGCGCGGGCAACGACGTGTTGGTCGGAGGCGCCGGCAACGACGTGTTGACCGGCGGCGCCGGCGCCGACACACTGACCGGCGGCAATGGc                         <  1:257972/134‑1 (MQ=255)
                                                                                                                    cTCACCGGCTCTGCCGGCAACGACGTGCTGCGTGGcggcagagccggtgaggttgtcgttgaaggcggagccgatgacgccttccatgttgctgtagctgtcggcaccgaggccagtcacgcccgggcctgccg                 <  2:798529‑M2/134‑100 (MQ=255)
                                                                                                                       aCCGGCTCTGCCGGCAACGACGTGCTGCGTGGCGGCGCGGGCAACGACGTGTTGGTCGGAGGCGCCGGCAACGACGTGTTGACCGGCGGCGCCGGCGCCGACACACTGACCGGCGGCAATGGCAGCGACACCtt              >  1:84762/1‑134 (MQ=255)
                                                                                                                         cGGCTCTGCCGGCAACGACGTGCTGCGTGGcggcagagccggtgaggttgtcgttgaaggcggagccgatgacgccttccatgttgctgtagctgtcggcaccg                                          <  1:598968‑M2/104‑75 (MQ=255)
                                                                                                                         cGGCTCTGCCGGCAACGACGTGCTGCGTGGcggcagagccggtgaggttgtcgttgaaggcggagccgatgacgccttccatgttgctgtagctgtcggcaccg                                          >  2:598968‑M2/1‑30 (MQ=255)
                                                                                                                             tctGCCGGCAACGACGTGCTGCGTGGCGGCGCGGGCAACGACGTGTTGGTCGGAGGCGCCGGCAACGACGTGTTGACCGGCGGCGCCGGCGCCGACACACTGACCGGCGGCAATGGCAGCGACACCTTTCGCtt        >  1:253619/1‑134 (MQ=255)
                                                                                                                                   ggCAACGACGTGCTGCGTGGCGGCGCGGGCAACGACGTGTTGGTCGGa                                                                                        >  2:130965/1‑48 (MQ=255)
                                                                                                                                   ggCAACGACGTGCTGCGTGGCGGCGCGGGCAACGACGTGTTGGTCGGa                                                                                        <  1:130965/48‑1 (MQ=255)
                                                                                                                                   ggCAACGACGTGCTGCGTGGCGGCGCGGGCAACGACGTGTTGGTCGGAGGCGCCGGCAACGACGTGTTGACCGGCGGCGCCGGCGCCGACACACTGACCGGCGGCAATGGCAGCGACACCTTTCGCTTTCTgcg  >  1:366280/1‑134 (MQ=255)
                                                                                                                                   |                                                                                                                                     
TGTTCACGCTGACGCAGAGCGGCAGCCCCACCACGGCAGGCCCGGGCGTGACTGGCCTCGGTGCCGACAGCTACAGCAACATGGAAGGCGTCATCGGCTCCGCCTTCAACGACAACCTCACCGGCTCTGCCGGCAACGACGTGCTGCGTGGCGGCGCGGGCAACGACGTGTTGGTCGGAGGCGCCGGCAACGACGTGTTGACCGGCGGCGCCGGCGCCGACACACTGACCGGCGGCAATGGCAGCGACACCTTTCGCTTTCTGCG  >  AM260480/777170‑777434

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.