New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	= 777301	10 (0.360)	4 (0.150)	4/206	2.1	30.0%	coding (4240/4659 nt)	rtxA2	RTX toxin exported protein
	?	AM260480	= 777320	9 (0.340)					coding (4259/4659 nt)	rtxA2	RTX toxin exported protein

CCCGGGCGTGACTGGCCTCGGTGCCGACAGCTACAGCAACATGGAAGGCGTCATCGGCTCCGCCTTCAACGACAACCTCACCGGCTCTGCCGGCAACGACGTGCTGCGTGGCGGCGCGGGCAACGACGTGTTGGTCGGAGGCGCCGGCAACGACGTGTTGACCGGCGGCGCCGGCGCCGACACACTGACCGGCGGCAATGGCAGCGACACCTTTCGCTTTCTGCGCGCGGACCCCGC  >  AM260480/777210‑777446                                                                                                               |                                                                                                                               cccGGGCGTGACTGGCCTCGGTGCCGACAGCTACAGCAACATGGAAGGCGTCATCGGCTCCGCCTTCAACGACAACCTCACCGGCTCTGCCGGCAACGACGTGCTGCGTGGCGGCGCGGGCAACGACGTGTTgg                                                                                                         >  2:257972/1‑134 (MQ=255)                                                                     aCGACAACCTCACCGGCTCTGCCGGCAACGACGTGCTGCGTGGCGGCGCGGGCAACGACGTGTTGGTCGGAGGCGCCGGCAACGACGTGTTGACCGGCGGCGCCGGCGCCGACACACTGACCGGCGGCAATGGc                                     <  1:257972/134‑1 (MQ=255)                                                                             cTCACCGGCTCTGCCGGCAACGACGTGCTGCGTGGcggcagagccggtgaggttgtcgttgaaggcggagccgatgacgccttccatgttgctgtagctgtcggcaccgaggccagtcacgcccgggcctgccg                             <  2:798529‑M2/134‑100 (MQ=255)                                                                                aCCGGCTCTGCCGGCAACGACGTGCTGCGTGGCGGCGCGGGCAACGACGTGTTGGTCGGAGGCGCCGGCAACGACGTGTTGACCGGCGGCGCCGGCGCCGACACACTGACCGGCGGCAATGGCAGCGACACCtt                          >  1:84762/1‑134 (MQ=255)                                                                                  cGGCTCTGCCGGCAACGACGTGCTGCGTGGcggcagagccggtgaggttgtcgttgaaggcggagccgatgacgccttccatgttgctgtagctgtcggcaccg                                                      <  1:598968‑M2/104‑75 (MQ=255)                                                                                  cGGCTCTGCCGGCAACGACGTGCTGCGTGGcggcagagccggtgaggttgtcgttgaaggcggagccgatgacgccttccatgttgctgtagctgtcggcaccg                                                      >  2:598968‑M2/1‑30 (MQ=255)                                                                                      tctGCCGGCAACGACGTGCTGCGTGGCGGCGCGGGCAACGACGTGTTGGTCGGAGGCGCCGGCAACGACGTGTTGACCGGCGGCGCCGGCGCCGACACACTGACCGGCGGCAATGGCAGCGACACCTTTCGCtt                    >  1:253619/1‑134 (MQ=255)                                                                                            ggCAACGACGTGCTGCGTGGCGGCGCGGGCAACGACGTGTTGGTCGGa                                                                                                    <  1:130965/48‑1 (MQ=255)                                                                                            ggCAACGACGTGCTGCGTGGCGGCGCGGGCAACGACGTGTTGGTCGGa                                                                                                    >  2:130965/1‑48 (MQ=255)                                                                                            ggCAACGACGTGCTGCGTGGCGGCGCGGGCAACGACGTGTTGGTCGGAGGCGCCGGCAACGACGTGTTGACCGGCGGCGCCGGCGCCGACACACTGACCGGCGGCAATGGCAGCGACACCTTTCGCTTTCTgcg              >  1:366280/1‑134 (MQ=255)                                                                                               aaCGACGTGCTGCGTGGCGGCGCGGGCAACGACGTGTTGGTCGGAGGCGCCGGCAACGACGTGTTGACCGGCGGCGCCGGCGCCGACACACTGACCGGCGGCAATGGCAGCGACACCTTTCGCTTTCTgcgcgc           <  2:84762/134‑1 (MQ=255)                                                                                                acgacgTGCTGCGTGGcggcagagccggtgaggttgtcgttgaaggcggagccgatgacgccttccatgttgctgtagctgtcggcaccgaggccagtcacgcccgggcctgccgtggtggggctgccgctctg          >  1:798529‑M2/1‑16 (MQ=255)                                                                                                        ctgcGTGGCGGCGCGGGCAACGACGTGTTGGTCGGAGGCGCCGGCAACGACGTGTTGACCGGCGGCGCCGGCGCCGACACACTGACCGGCGGCAATGGCAGCGACACCTTTCGCTTTCTGCGCGCGGACCCCGc  >  1:943709/1‑134 (MQ=255)                                                                                                               |                                                                                                                               CCCGGGCGTGACTGGCCTCGGTGCCGACAGCTACAGCAACATGGAAGGCGTCATCGGCTCCGCCTTCAACGACAACCTCACCGGCTCTGCCGGCAACGACGTGCTGCGTGGCGGCGCGGGCAACGACGTGTTGGTCGGAGGCGCCGGCAACGACGTGTTGACCGGCGGCGCCGGCGCCGACACACTGACCGGCGGCAATGGCAGCGACACCTTTCGCTTTCTGCGCGCGGACCCCGC  >  AM260480/777210‑777446

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.