New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260480 = 90605421 (0.760)5 (0.200) 5/196 1.7 22.1% coding (234/474 nt) h16_B0799 transcriptional regulator, MarR‑family
?AM260480 = 906098 16 (0.640)coding (278/474 nt) h16_B0799 transcriptional regulator, MarR‑family

CCGGGATTGGACCAGACTTCGCTCGGGCAGGAGGTCGGCCTGGACCGGACCACGACCGCCGACGTCGTGCGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260480/905980‑906054
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgcgccggTCGGCGGGGTTGTCGCGGCGCTCTACCAGCCCGCGCTCCTCGAGCCGGCGCACGACGTCGGCGGTCGTGGTCCGGTCCAGGCCGACCTCCTGCCCGAGCGAAGTCTGGTCCAATCCCGGCAGCACCGACAGCA  <  AM260480/906098‑905966
                                                                                                                                                                                                                
CCGGGATTGGACCAGACTTCGCTCGGGCAGGAGGTCGGCCTGGACCGGACCACGACCGCCGACGTCGTGCGCCGGTCGGC                                                                                                                                  >  1:933100/1‑80
CCGGGATTGGACCAGACTTCGCTCGGGCAGGAGGTCGGCCTGGACCGGACCACGACCGCCGACGTCGTGCGCCGGTCGGC                                                                                                                                  <  2:933100/80‑1
         GACCAGACTTCGCTCGGGCAGGAGGTCGGCCTGGACCGGACCACGACCGCCGACGTCGTGCGCCGGTCGGCGGGGTTGTCGCGGCGCTCTACCAGCCCGCGCTCCTCGAGCCGGCGC                                                                                    <  1:329873/117‑1
         GACCAGACTTCGCTCGGGCAGGAGGTCGGCCTGGACCGGACCACGACCGCCGACGTCGTGCGCCGGTCGGCGGGGTTGTCGCGGCGCTCTACCAGCCCGCGCTCCTCGAGCCGGCGC                                                                                    >  2:329873/1‑117
                                            CCGGACCACGACCGCCGACGTCGTGCGCCGGTCGGCGGGGTTGTCGCGGCGCTCTACCAGCCCGCGCTCCTCGAGCCGGCGCACGACGTCGGCGGTCGTGGTCCGGTCCAGGCCGACCTCCTGCCCGAGCGAcg                                >  2:528870/1‑132
                                                                     CGCCGGTCGGCGGGGTTGTCGCGGCGCTCTACCAGCCCGCGCTCCTCGAGCCGGCGCACGACGTCGGCGGTCGTGGTCCGGTCCAGGCCGACCTCCTGCCCGAGCGAAGTCTGGTCCAATCCCGGCAGCACCGA       <  2:77173/134‑1
                                                                          GTCGGCGGGGTTGTCGCGGCGCTCTACCAGCCCGCGCTCCTCGAGCCGGCGCACGACGTCGGCGGTCGTGGTCCGGTCCAGGCCGACCTCCTGCCCGAGCGAAGTCTGGTCCAATCCCGGCAGCACCGACAGCA  <  1:135893/134‑1
                                                                                                                                                                                                                
CCGGGATTGGACCAGACTTCGCTCGGGCAGGAGGTCGGCCTGGACCGGACCACGACCGCCGACGTCGTGCGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260480/905980‑906054
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgcgccggTCGGCGGGGTTGTCGCGGCGCTCTACCAGCCCGCGCTCCTCGAGCCGGCGCACGACGTCGGCGGTCGTGGTCCGGTCCAGGCCGACCTCCTGCCCGAGCGAAGTCTGGTCCAATCCCGGCAGCACCGACAGCA  <  AM260480/906098‑905966

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.