New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	= 906054	21 (0.760)	5 (0.200)	5/196	1.7	22.1%	coding (234/474 nt)	h16_B0799	transcriptional regulator, MarR‑family
	?	AM260480	= 906098	16 (0.640)					coding (278/474 nt)	h16_B0799	transcriptional regulator, MarR‑family

CCAATATCACGCCCGTGCAATATGCCATCCTGACGGTGCTGTCGGTGCTGCCGGGATTGGACCAGACTTCGCTCGGGCAGGAGGTCGGCCTGGACCGGACCACGACCGCCGACGTCGTGCGCCGGCTCGAGGAGCGCGGGCTGGTAGAGCGCCGCGACAACCCCGCCGACCGGCGCACCCGCCACGTCCACCTGACGCGGGAAGGCAAGAGCGTGGTCACGGCGCTGCGTGGCGACATGGCGCGTGCGCAGGAGCGCA  >  AM260480/905930‑906187                                                                                                                             |                                                                                                                                      ccAATATCACGCCCGTGCAATATGCCATCCTGACGGTGCTGTCGGTGCTGCCGGGATTGGACCAGACTTCGCTCGGGCAGGAGGTCGGCCTGGACCGGACCACGACCGCCGACGTCGTGCGCCGGCTCgaggag                                                                                                                              <  2:198797/134‑1 (MQ=255)           gCCCGTGCAATATGCCATCCTGACGGTGCTGTCGGTGCTGCCGGGATTGGACCAGACTTCGCTCGGGCAGGAGGTCGGCCTGGACCGGACCACGACCGCCGACGTCGTGCGCCGGCTCGAGGAGCGCGGGCTgg                                                                                                                    <  2:162174/134‑1 (MQ=255)                   aaTATGCCATCCTGACGGTGCTGTCGGTGCTGCCGGGATTGGACCAGACTTCGCTCGGGCAGGAGGTCGGCCTGGACCGGACCACGACCGCCGACGTCGTGCGCCGGCTCgagg                                                                                                                                <  2:709549/114‑1 (MQ=255)                   aaTATGCCATCCTGACGGTGCTGTCGGTGCTGCCGGGATTGGACCAGACTTCGCTCGGGCAGGAGGTCGGCCTGGACCGGACCACGACCGCCGACGTCGTGCGCCGGCTCgagg                                                                                                                                >  1:709549/1‑114 (MQ=255)                   aaTATGCCATCCTGACGGTGCTGTCGGTGCTGCCGGGATTGGACCAGACTTCGCTCGGGCAGGAGGTCGGCCTGGACCGGACCACGACCGCCGACGTCGTGCGCCGGCTCGAGGAGCGCGGGCTGGTAGAgcgc                                                                                                            >  2:952423/1‑134 (MQ=255)                    atatGCCATCCTGACGGTGCTGTCGGTGCTGCCGGGATTGGACCAGACTTCGCTCGGGCAGGAGGTCGGCCTGGACCGGACCACGACCGCCGACGTCGTGCGCCGGCt                                                                                                                                     >  2:940648/1‑108 (MQ=255)                    atatGCCATCCTGACGGTGCTGTCGGTGCTGCCGGGATTGGACCAGACTTCGCTCGGGCAGGAGGTCGGCCTGGACCGGACCACGACCGCCGACGTCGTGCGCCGGCt                                                                                                                                     <  1:940648/108‑1 (MQ=255)                           aTCCTGACGGTGCTGTCGGTGCTGCCGGGATTGGACCAGACTTCGCTCGGGCAGGAGGTCGGCCTGGACCGGACCACGACCGCCGACGTCGTGCGCCGGCTCGAGGAGCGCGGGCTGGTAGAGCGCCGCGACaa                                                                                                    >  1:135568/1‑134 (MQ=255)                                gACGGTGCTGTCGGTGCTGCCGGGATTGGACCAGACTTCGCTCGGGCAGGAGGTCGGCCTGGACCGGACCACGACCGCCGACGTCGTGCGCCGGCt                                                                                                                                     <  2:230055/96‑1 (MQ=255)                                gACGGTGCTGTCGGTGCTGCCGGGATTGGACCAGACTTCGCTCGGGCAGGAGGTCGGCCTGGACCGGACCACGACCGCCGACGTCGTGCGCCGGCt                                                                                                                                     >  1:230055/1‑96 (MQ=255)                                     tGCTGTCGGTGCTGCCGGGATTGGACCAGACTTCGCTCGGGCAGGAGGTCGGCCTGGACCGGACCACGACCGCCGACGTCGTGCGCCGGCTCGAGGAGCGCGGGCTGGTAGAGCGCCGCGACAACCCCGCCGAc                                                                                          <  1:135893‑M2/134‑2 (MQ=255)                                          tCGGTGCTGCCGGGATTGGACCAGACTTCGCTCGGGCAGGAGGTCGGCCTGGACCGGACCACGACCGCCGACGTCGTGCGCCGGCTCGAGGAGCGCGGGCTGGTAGAGCGCCGCGACAACCCCGCCGAccggcg                                                                                     <  2:77173‑M2/134‑7 (MQ=255)                                                   ccGGGATTGGACCAGACTTCGCTCGGGCAGGAGGTCGGCCTGGACCGGACCACGACCGCCGACGTCGTGCGCCGGtcggc                                                                                                                                  <  2:933100‑M1/80‑6 (MQ=255)                                                   ccGGGATTGGACCAGACTTCGCTCGGGCAGGAGGTCGGCCTGGACCGGACCACGACCGCCGACGTCGTGCGCCGGtcggc                                                                                                                                  >  1:933100‑M1/1‑75 (MQ=255)                                                   ccGGGATTGGACCAGACTTCGCTCGGGCAGGAGGTCGGCCTGGACCGGACCACGACCGCCGACGTCGTGCGCCGGCTCGAGGAGCGCGGGCTGGTAGAGCGCCGCGACAACCCCGCCGACCGGCGCACCCGc                                                                              <  1:77173/132‑1 (MQ=255)                                                       gATTGGACCAGACTTCGCTCGGGCAGGAGGTCGGCCTGGACCGGACCACGACCGCCGACGTCGTGCGCCGGCTCGAGGAGCGCGGGCTGGTAGAGCGCCGCGACAACCCCGCCGACCGGCGCACCCGCCACGTc                                                                        >  2:2827/1‑134 (MQ=255)                                                            gACCAGACTTCGCTCGGGCAGGAGGTCGGCCTGGACCGGACCACGACCGCCGACGTCGTGCGCCGGtcggcggggttgtcgcggcgctctaccagcccgcgctcctcgagccggcgc                                                                                    <  1:329873‑M1/117‑52 (MQ=255)                                                            gACCAGACTTCGCTCGGGCAGGAGGTCGGCCTGGACCGGACCACGACCGCCGACGTCGTGCGCCGGtcggcggggttgtcgcggcgctctaccagcccgcgctcctcgagccggcgc                                                                                    >  2:329873‑M1/1‑66 (MQ=255)                                                                   cgtcgCTCGGGCAGGAGGTCGGCCTGGACCGGACCACGACCGCCGACGTCGTGCGCCGGCTCGAGGAGCGCGGGCTGGTAGAGCGCCGCGACAACCCCGCCGAccggcgcacgacgtcggcggtcgtggtccgg                                                            >  2:528870‑M2/3‑103 (MQ=255)                                                                             gCAGGAGGTCGGCCTGGACCGGACCACGACCGCCGACGTCGTGCGCCGGCTCGAGGAGCGCGGGCTGGTAGAGCGCCGCGACAACCCCGCCGACCGGCGCACCCGCCACGTCCACCTGACGCGGGAAGGCAaga                                                  <  2:135568/134‑1 (MQ=255)                                                                                  aggTCGGCCTGGACCGGACCACGACCGCCGACGTCGTGCGCCGGCTCGAGGAGCGCGGGCTGGTAGAGCGCCGCGACAACCCCGCCGACCGGCGCACCCGCCACGTCCACCTGACGCGGGAAGGCAAGAGCGTg                                             <  1:952423/134‑1 (MQ=255)                                                                                           tGGACCGGACCACGACCGCCGACGTCGTGCGCCGGCTCGAGGAGCGCGGGCTGGTAGAgcg                                                                                                             >  2:280606/1‑61 (MQ=255)                                                                                           tGGACCGGACCACGACCGCCGACGTCGTGCGCCGGCTCGAGGAGCGCGGGCTGGTAGAgcg                                                                                                             <  1:280606/61‑1 (MQ=255)                                                                                               ccggaccACGACCGCCGACGTCGTGCGCCGGtcggcggggttgtcgcggcgctctaccagcccgcgctcctcgagccggcgcacgacgtcggcggtcgtggtccggtccaggccgacctcctgcccgagcgacg                                >  2:528870‑M1/1‑31 (MQ=255)                                                                                                      aCGACCGCCGACGTCGTGCGCCGGCTCGAGGAGCGCGGGCTGGTAGAGCGCCGCGACAACCCCGCCGACCGGCGCACCCGCCACGTCCACCTGACGCGGGAAGGCAAGAGCGTGGTCACGGCGCTGCGTGGCGa                         >  1:92818/1‑134 (MQ=255)                                                                                                       cGACCGCCGACGTCGTGCGCCGGCTCGAGGAGCGCGGGCTGGTAGAGCGCCGCGACAACCCCGCCGACCGGCGCACCCGCCACGTCCACCTGACGCGGGAAGGCAAGAGCGTGGTCAc                                        <  2:310793/118‑1 (MQ=255)                                                                                                       cGACCGCCGACGTCGTGCGCCGGCTCGAGGAGCGCGGGCTGGTAGAGCGCCGCGACAACCCCGCCGACCGGCGCACCCGCCACGTCCACCTGACGCGGGAAGGCAAGAGCGTGGTCAc                                        >  1:310793/1‑118 (MQ=255)                                                                                                       cGACCGCCGACGTCGTGCGCCGGCTCGAGGAGCGCGGGCTGGTAGAGCGCCGCGACAACCCCGCCGACCGGCGCACCCGCCACGTCCACCTGACGCGGGAAGGCAAGAGCGTGGTCACGGCGCTGCGTGGCGa                         >  1:552817/1‑133 (MQ=255)                                                                                                             ccgACGTCGTGCGCCGGCTCGAGGAGCGCGGGCTGGTAGAGCGCCGCGACAACCCCGCCGACCGGCGCACCCGCCACGTCCACCTGACGCGGGAAGGCAAGAGCGTGGTCACGGCGCTGCGTGGCGACATGgcg                  <  2:552817/134‑1 (MQ=255)                                                                                                                       gcgcCGGCTCGAGGAGCGCGGGCTGGTAGAGCGCCGCGACAACCCCGCCGAccggcgcacgacgtcggcggtcgtggtccggtccaggccgacctcctgcccgagcgaagtctggtc                         >  2:329873‑M2/1‑51 (MQ=255)                                                                                                                       gcgcCGGCTCGAGGAGCGCGGGCTGGTAGAGCGCCGCGACAACCCCGCCGAccggcgcacgacgtcggcggtcgtggtccggtccaggccgacctcctgcccgagcgaagtctggtc                         <  1:329873‑M2/117‑67 (MQ=255)                                                                                                                        cgcCGGtcggcggggttgtcgcggcgctctaccagcccgcgctcctcgagccggcgcacgacgtcggcggtcgtggtccggtccaggccgacctcctgcccgagcgaagtctggtccaatcccggcagcaccga       <  2:77173‑M1/134‑129 (MQ=255)                                                                                                                             gtcggcggggttgtcgcggcgctctaccagcccgcgctcctcgagccggcgcacgacgtcggcggtcgtggtccggtccaggccgacctcctgcccgagcgaagtctggtccaatcccggcagcaccgacagca  <  1:135893‑M1/134‑134 (MQ=255)                                                                                                                             |                                                                                                                                      CCAATATCACGCCCGTGCAATATGCCATCCTGACGGTGCTGTCGGTGCTGCCGGGATTGGACCAGACTTCGCTCGGGCAGGAGGTCGGCCTGGACCGGACCACGACCGCCGACGTCGTGCGCCGGCTCGAGGAGCGCGGGCTGGTAGAGCGCCGCGACAACCCCGCCGACCGGCGCACCCGCCACGTCCACCTGACGCGGGAAGGCAAGAGCGTGGTCACGGCGCTGCGTGGCGACATGGCGCGTGCGCAGGAGCGCA  >  AM260480/905930‑906187

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.