New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	= 906054	21 (0.760)	5 (0.200)	5/196	1.7	22.1%	coding (234/474 nt)	h16_B0799	transcriptional regulator, MarR‑family
	?	AM260480	= 906098	16 (0.640)					coding (278/474 nt)	h16_B0799	transcriptional regulator, MarR‑family

TGCTGTCGGTGCTGCCGGGATTGGACCAGACTTCGCTCGGGCAGGAGGTCGGCCTGGACCGGACCACGACCGCCGACGTCGTGCGCCGGCTCGAGGAGCGCGGGCTGGTAGAGCGCCGCGACAACCCCGCCGACCGGCGCACCCGCCACGTCCACCTGACGCGGGAAGGCAAGAGCGTGGTCACGGCGCTGCGTGGCGACATGGCGCGTGCGCAGGAGCGCATGCTGGCGCCGCTGAAGCCCGCCCAGCGCGAAGT  >  AM260480/905966‑906221                                                                                                                                     |                                                                                                                            tGCTGTCGGTGCTGCCGGGATTGGACCAGACTTCGCTCGGGCAGGAGGTCGGCCTGGACCGGACCACGACCGCCGACGTCGTGCGCCGGCTCGAGGAGCGCGGGCTGGTAGAGCGCCGCGACAACCCCGCCGAc                                                                                                                            <  1:135893‑M2/134‑2 (MQ=255)      tCGGTGCTGCCGGGATTGGACCAGACTTCGCTCGGGCAGGAGGTCGGCCTGGACCGGACCACGACCGCCGACGTCGTGCGCCGGCTCGAGGAGCGCGGGCTGGTAGAGCGCCGCGACAACCCCGCCGAccggcg                                                                                                                       <  2:77173‑M2/134‑7 (MQ=255)               ccGGGATTGGACCAGACTTCGCTCGGGCAGGAGGTCGGCCTGGACCGGACCACGACCGCCGACGTCGTGCGCCGGCTCGAGGAGCGCGGGCTGGTAGAGCGCCGCGACAACCCCGCCGACCGGCGCACCCGc                                                                                                                <  1:77173/132‑1 (MQ=255)                   gATTGGACCAGACTTCGCTCGGGCAGGAGGTCGGCCTGGACCGGACCACGACCGCCGACGTCGTGCGCCGGCTCGAGGAGCGCGGGCTGGTAGAGCGCCGCGACAACCCCGCCGACCGGCGCACCCGCCACGTc                                                                                                          >  2:2827/1‑134 (MQ=255)                               cgtcgCTCGGGCAGGAGGTCGGCCTGGACCGGACCACGACCGCCGACGTCGTGCGCCGGCTCGAGGAGCGCGGGCTGGTAGAGCGCCGCGACAACCCCGCCGAccggcgcacgacgtcggcggtcgtggtccgg                                                                                              >  2:528870‑M2/3‑103 (MQ=255)                                         gCAGGAGGTCGGCCTGGACCGGACCACGACCGCCGACGTCGTGCGCCGGCTCGAGGAGCGCGGGCTGGTAGAGCGCCGCGACAACCCCGCCGACCGGCGCACCCGCCACGTCCACCTGACGCGGGAAGGCAaga                                                                                    <  2:135568/134‑1 (MQ=255)                                              aggTCGGCCTGGACCGGACCACGACCGCCGACGTCGTGCGCCGGCTCGAGGAGCGCGGGCTGGTAGAGCGCCGCGACAACCCCGCCGACCGGCGCACCCGCCACGTCCACCTGACGCGGGAAGGCAAGAGCGTg                                                                               <  1:952423/134‑1 (MQ=255)                                                                  aCGACCGCCGACGTCGTGCGCCGGCTCGAGGAGCGCGGGCTGGTAGAGCGCCGCGACAACCCCGCCGACCGGCGCACCCGCCACGTCCACCTGACGCGGGAAGGCAAGAGCGTGGTCACGGCGCTGCGTGGCGa                                                           >  1:92818/1‑134 (MQ=255)                                                                   cGACCGCCGACGTCGTGCGCCGGCTCGAGGAGCGCGGGCTGGTAGAGCGCCGCGACAACCCCGCCGACCGGCGCACCCGCCACGTCCACCTGACGCGGGAAGGCAAGAGCGTGGTCAc                                                                          <  2:310793/118‑1 (MQ=255)                                                                   cGACCGCCGACGTCGTGCGCCGGCTCGAGGAGCGCGGGCTGGTAGAGCGCCGCGACAACCCCGCCGACCGGCGCACCCGCCACGTCCACCTGACGCGGGAAGGCAAGAGCGTGGTCAc                                                                          >  1:310793/1‑118 (MQ=255)                                                                   cGACCGCCGACGTCGTGCGCCGGCTCGAGGAGCGCGGGCTGGTAGAGCGCCGCGACAACCCCGCCGACCGGCGCACCCGCCACGTCCACCTGACGCGGGAAGGCAAGAGCGTGGTCACGGCGCTGCGTGGCGa                                                           >  1:552817/1‑133 (MQ=255)                                                                         ccgACGTCGTGCGCCGGCTCGAGGAGCGCGGGCTGGTAGAGCGCCGCGACAACCCCGCCGACCGGCGCACCCGCCACGTCCACCTGACGCGGGAAGGCAAGAGCGTGGTCACGGCGCTGCGTGGCGACATGgcg                                                    <  2:552817/134‑1 (MQ=255)                                                                                   gcgcCGGCTCGAGGAGCGCGGGCTGGTAGAGCGCCGCGACAACCCCGCCGAccggcgcacgacgtcggcggtcgtggtccggtccaggccgacctcctgcccgagcgaagtctggtc                                                           >  2:329873‑M2/1‑51 (MQ=255)                                                                                   gcgcCGGCTCGAGGAGCGCGGGCTGGTAGAGCGCCGCGACAACCCCGCCGAccggcgcacgacgtcggcggtcgtggtccggtccaggccgacctcctgcccgagcgaagtctggtc                                                           <  1:329873‑M2/117‑67 (MQ=255)                                                                                             gaggagCGCGGGCTGGTAGAGCGCCGCGACAACCCCGCCGACCGGCGCACCCGCCACGTCCACCTGACGCGGGAAGGCAAGAGCGTGGTCACGGCGCTGCGTGGCGACATGGCGCGTGCGCAGGAGCGCATg                                  <  2:92818/132‑1 (MQ=255)                                                                                                gagCGCGGGCTGGTAGAGCGCCGCGACAACCCCGCCGACCGGCGCACCCGCCACGTCCACCTGACGCGGGAAGGCAAGAGCGTGGTCACGGCGCTGCGTGGCGACATGGCGCGTGCGCAGGAGCGCATGCTGgc                             >  2:416034/1‑134 (MQ=255)                                                                                                                     cgcgACAACCCCGCCGACCGGCGCACCCGCCACGTCCACCTGACGCGGGAAGGCAAGAGCGTGGTCACGGCGCTGCGTGGCGACATGGCGCGTGCGCAGGAGCGCATGCTGGCGCCGCTGAAGCCCGCCCAgcg        <  2:135893/134‑1 (MQ=255)                                                                                                                      gcgACAACCCCGCCGACCGGCGCACCCGCCACGTCCACCTGACGCGGGAAGGCAAGAGCGTGGTCACGGCGCTGCGTGGCGACATGGCGCGTGCGCAgg                                          >  1:647813/1‑99 (MQ=255)                                                                                                                      gcgACAACCCCGCCGACCGGCGCACCCGCCACGTCCACCTGACGCGGGAAGGCAAGAGCGTGGTCACGGCGCTGCGTGGCGACATGGCGCGTGCGCAgg                                          <  2:647813/99‑1 (MQ=255)                                                                                                                      gcgACAACCCCGCCGACCGGCGCACCCGCCACGTCCACCTGACGCGGGAAGGCAAGAGCGTGGTCACGGCGCTGCGTGGCGACATGGCGCGTGCGCAGGAGCGCATGCTGGCGCCGCTGAAGCCCGCCCAgcgc       <  1:2827/134‑1 (MQ=255)                                                                                                                           aaCCCCGCCGACCGGCGCACCCGCCACGTCCACCTGACGCGGGAAAGCAAGAGCGTGGTCACGGCGCTGCGTGGCGACATGGCGCGTGCGCAGGAGCGCATGCTGGCGCCGCTGAAGCCCGCCCAGCGCGAAgt  >  2:534703/1‑134 (MQ=255)                                                                                                                                 gccgAccggcgcacgacgtcggcggtcgtggtccggtccaggccgacctcctgcccgagcgaagtctggtccaatcccgg                                                  >  1:933100‑M2/1‑5 (MQ=255)                                                                                                                                 gccgAccggcgcacgacgtcggcggtcgtggtccggtccaggccgacctcctgcccgagcgaagtctggtccaatcccgg                                                  <  2:933100‑M2/80‑76 (MQ=255)                                                                                                                                     |                                                                                                                            TGCTGTCGGTGCTGCCGGGATTGGACCAGACTTCGCTCGGGCAGGAGGTCGGCCTGGACCGGACCACGACCGCCGACGTCGTGCGCCGGCTCGAGGAGCGCGGGCTGGTAGAGCGCCGCGACAACCCCGCCGACCGGCGCACCCGCCACGTCCACCTGACGCGGGAAGGCAAGAGCGTGGTCACGGCGCTGCGTGGCGACATGGCGCGTGCGCAGGAGCGCATGCTGGCGCCGCTGAAGCCCGCCCAGCGCGAAGT  >  AM260480/905966‑906221

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.