New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	1196561 =	9 (0.330)	4 (0.160)	4/196	2.0	27.4%	coding (639/879 nt)	h16_B1060	Hypothetical protein
	?	AM260480	1196660 =	13 (0.520)					coding (738/879 nt)	h16_B1060	Hypothetical protein

GGCAGGTGCTCCTGCCGGGACAGGCCAGGCGGCTGCGCGCGTGGCCGCTGCCATCCCGTCCAGGCGCAGCAGCAGCGGCGTGTCCCGCACCGGCCCGCGCCGCTTGTGGAAGGTGATCGACAGCACATTGCCGGGCAGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260480/1196702‑1196561 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcagcggcCACGCGCGCAGCCGCCTGGCCTGTCCCGGCAGGAGCACCTGCCTTGTCTGAATCGTCTTCTCCATCTTCTTCCGATGCCGTACTGGATCGCGGTGCACCTGCCGCGCCTGCCCCTGGACGCCCTGCAGC  >  AM260480/1196660‑1196788                                                                                                                                                                                                                                                                                 GGCAGGTGCTCCTGCCGGGACAGGCCAGGCGGCTGCGCGCGTGGCCGCTGCCATCCCGTCCAGGCGCAGCAGCAGCGGCGTGTCCCGCACCGGCCCGCGCCGCTTGTGGAAGGTGATCGACAGCACATTGCCGG                                                                                                                                           <  1:116739/134‑1   CAGGTGCTCCTGCCGGGACAGGCCAGGCGGCTGCGCGCGTGGCCGCTGCCATCCCGTCCAGGCGCAGCAGCAGCGGCGTGTCCCGCACCGGCCCGCGCCGCTTGTGGAAGGTGATCGACAGCACATTGCCGGGC                                                                                                                                         <  2:314057/134‑1      GTGCTCCTGCCGGGACAGGCCAGGCGGCTGCGCGCGTGGCCGCTGCCATCCCGTCCAGGCGCAGCAGCAGCGGCGTGTCCCGCACCGGCCCGCGCCGCTTGTGGAAGGTGATCGACAGCACATTGCCGGGCAGC                                                                                                                                      >  2:627368/1‑134                        GCCAGGCGGCTGCGCGCGTGGCCGCTGCCATCCCGTCCAGGCGCAGCAGCAGCGGCGTGTCCCGCACCGGCCCGCGCCGCTTGTGGAAGGTGATCGACAGCACATTGCCGGGCAGCGGCCACGCGCGCAGCCGC                                                                                                                    <  2:948382/134‑1                                                                                                          GTGGAAGGTGATCGACAGCACATTGCCGGGCAGCGGCCACGCGCGCAGCCGCCTGGCCTGTCCCGGCAGGAGCAC                                                                                             <  1:607162/75‑1                                                                                                          GTGGAAGGTGATCGACAGCACATTGCCGGGCAGCGGCCACGCGCGCAGCCGCCTGGCCTGTCCCGGCAGGAGCAC                                                                                             >  2:607162/1‑75                                                                                                                               ATTGCCGGGCAGCGGCCACGCGCGCAGCCGCCTGGCCTGTCCCGGCAGGAGCACCTGCCTTGTCTGAATCGTCTTCTCCATCTTCTTCCGATGCCGTACTGGATCGCGGTGCACCTGCCGCGCCTGCCCCTGGA             >  1:808120/1‑134                                                                                                                                        CAGCGGCCACGCGCGCAGCCGCCTGGCCTGTCCCGGCAGGAGCACCTGCCTTGTCTGAATCGTCTTCTCCATCTTCTTCCGATGCCGTACTGGATC                                          >  1:835961/1‑96                                                                                                                                        CAGCGGCCACGCGCGCAGCCGCCTGGCCTGTCCCGGCAGGAGCACCTGCCTTGTCTGAATCGTCTTCTCCATCTTCTTCCGATGCCGTACTGGATC                                          <  2:835961/96‑1                                                                                                                                          GCGGCCACGCGCGCAGCCGCCTGGCCTGTCCCGGCAGGAGCACCTGCCTTGTCTGAATCGTCTTCTCCATCTTCTTCCGATGCCGTACTGGATCGCGGTGCACCTGCCGCGCCTGCCCCTGGACGCCCTGCAGC  <  1:87494/134‑1                                                                                                                                                                                                                                                                                 GGCAGGTGCTCCTGCCGGGACAGGCCAGGCGGCTGCGCGCGTGGCCGCTGCCATCCCGTCCAGGCGCAGCAGCAGCGGCGTGTCCCGCACCGGCCCGCGCCGCTTGTGGAAGGTGATCGACAGCACATTGCCGGGCAGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260480/1196702‑1196561 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcagcggcCACGCGCGCAGCCGCCTGGCCTGTCCCGGCAGGAGCACCTGCCTTGTCTGAATCGTCTTCTCCATCTTCTTCCGATGCCGTACTGGATCGCGGTGCACCTGCCGCGCCTGCCCCTGGACGCCCTGCAGC  >  AM260480/1196660‑1196788

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.