| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260480 | 1196561 = | 9 (0.330) | 4 (0.160) | 4/196 | 2.0 | 27.4% | coding (639/879 nt) | h16_B1060 | Hypothetical protein |
| ? | AM260480 | 1196660 = | 13 (0.520) | coding (738/879 nt) | h16_B1060 | Hypothetical protein | |||||
CGCGGCCCGCCCCGAGGCGCTGCGCCGCCTGCAGGTGCTGGCGCAGGCCGGCGACGCGGTGGCATGGGCGCTGCGCCCGGCCACGGCGCTGCGCGAGTCGTCGCCGGCGGTGCTGCGGCTGCTGCTGGCGCCGCTGCCCGGCAATGTGCTGTCGATCACCTTCCACAAGCGGCGCGGGCCGGTGCGGGACACGCCGCTGCTGCTGCGCCTGGACGGGATGGCAGCGGCCACGCGCGCAGCCGCCTGGCCTGTCCCGG > AM260480/1196432‑1196688 | gctgcagggcgtccaggggcaggcgcggcaggtgcaccgcgatccagtacggcatcggaagaagatggagaagacgattcagacaaggcaggtgctcctgccgggacaggccaggcggctgcgcgcgtgGCCGc < 1:87494‑M1/5‑1 (MQ=255)cgcgGCCCGCCCCGAGGCGCTGCGCCGCCTGCAGGTGCTGGCGCAGGCCGGCGACGCGGTGGCATGGGCGCTGCGCCCGGCCACGGCGCTGCGCGAGTCGTCGCCGGCGGTGCTGCGGCTGCTGCTGGcgccgc < 1:705936/134‑1 (MQ=255) tccaggggcaggcgcggcaggtgcaccgcgatccagtacggcatcggaagaagatggagaagacgattcagacaaggcaggtgctcctgccgggacaggccaggcggctgcgcgcgtgGCCGCTGCCCGGCAAt > 1:808120‑M1/119‑134 (MQ=255) ccgccTGCAGGTGCTGGCGCAGGCCGGCGACGCGGTGGCATGGGCGCTGCGCCCGGCCACGGCGCTGCGCGAGTCGTCGCCGGCGGTGCTGCGGCTGCTGCTGGCGCCGCTGCCCGGCAATGTGCTGTCGATCa > 2:515985/1‑134 (MQ=255) gatccagtacggcatcggaagaagatggagaagacgattcagacaaggcaggtgctcctgccgggacaggccaggcggctgcgcgcgtgGCCGCTg > 1:835961‑M1/90‑96 (MQ=255) gatccagtacggcatcggaagaagatggagaagacgattcagacaaggcaggtgctcctgccgggacaggccaggcggctgcgcgcgtgGCCGCTg < 2:835961‑M1/7‑1 (MQ=255) cgcAGGCCGGCGACGCGGTGGCATGGGCGCTGCGCCCGGCCACGGCGCTGCGCGAGTCGTCGCCGGCGGTGCTGCGGCTGCTGCTGGCGCCGCTGCCCGGCAATGTGCTGTCGATCACCTTCCACAAGCGgcgc < 1:515985/134‑1 (MQ=255) cgcAGGCCGGCGACGCGGTGGCATGGGCGCTGCGCCCGGCCACGGCGCTGCGCGAGTCGTCGCCGGCGGTGCTGCGGCTGCTGCTGGCGCCGCTGCCCGGCAATGTGCTGTCGATCACCTTCCACAAGCGgcgc < 2:4788/134‑1 (MQ=255) tGCGCCCGGCCACGGCGCTGCGCGAGTCGTCGCCGGCGGTGCTGCGGCTGCTGCTGGCGCCGCTGCCCGGCAATGTGCTGTCGATCACCTTCCACAAGCGgcgc < 1:479197/104‑1 (MQ=255) tGCGCCCGGCCACGGCGCTGCGCGAGTCGTCGCCGGCGGTGCTGCGGCTGCTGCTGGCGCCGCTGCCCGGCAATGTGCTGTCGATCACCTTCCACAAGCGgcgc > 2:479197/1‑104 (MQ=255) cccGGCCACGGCGCTGCGCGAGTCGTCGCCGGCGGTGCTGCGGCTGCTGCTGGCGCCGCTGCCCGGCAATGTGCTGTCGATCACCTTCCACAAGCGGCGCGGGCCGGTGCGGGACACGCCGCTGCTGCTGCGcc > 1:525849/1‑134 (MQ=255) gtgctcctgccgggacaggccaggcggctgcgcgcgtgGCCGCTGCCCGGCAATGTGCTGTCGATCACCTTCcac < 1:607162‑M1/37‑1 (MQ=255) gtgctcctgccgggacaggccaggcggctgcgcgcgtgGCCGCTGCCCGGCAATGTGCTGTCGATCACCTTCcac > 2:607162‑M1/39‑75 (MQ=255) cggcggTGCTGCGGCTGCTGCTGGCGCCGCTGCCCGGCAATGTGCTGTCGATCACCTTCCACAAGCGGCGCGGGCCGGTGCGGGACACGCCGCTGCTGCTGCGCCTGGACGGGATGGCAGCGGCCAcgcgcg > 1:627368/1‑132 (MQ=255) gcggctgcgcgcgtgGCCGCTGCCCGGCAATGTGCTGTCGATCACCTTCCACAAGCGGCGCGGGCCGGTGCGGGACACGCCGCTGCTGCTGCGCCTGGACGGGATGGCAGCGGCCACGCGCGCAGCCgcctggc < 2:948382‑M1/119‑1 (MQ=255) ctgGCGCCGCTGCCCGGCAATGTGCTGTCGATCACCTTCCACAAGCGGCGCGGGCCGGTGCGGGACACGCCGCTGCTGCTGCGCCTGGACGGGATGGCAGCGGCCACGCGCGCAGCCGCCTGGCCTGTCCCgg < 2:525849/133‑1 (MQ=255) | CGCGGCCCGCCCCGAGGCGCTGCGCCGCCTGCAGGTGCTGGCGCAGGCCGGCGACGCGGTGGCATGGGCGCTGCGCCCGGCCACGGCGCTGCGCGAGTCGTCGCCGGCGGTGCTGCGGCTGCTGCTGGCGCCGCTGCCCGGCAATGTGCTGTCGATCACCTTCCACAAGCGGCGCGGGCCGGTGCGGGACACGCCGCTGCTGCTGCGCCTGGACGGGATGGCAGCGGCCACGCGCGCAGCCGCCTGGCCTGTCCCGG > AM260480/1196432‑1196688 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |