New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260480 1196561 =9 (0.330)4 (0.160) 4/196 2.0 27.4% coding (639/879 nt) h16_B1060 Hypothetical protein
?AM260480 1196660 = 13 (0.520)coding (738/879 nt) h16_B1060 Hypothetical protein

CGCGGCCCGCCCCGAGGCGCTGCGCCGCCTGCAGGTGCTGGCGCAGGCCGGCGACGCGGTGGCATGGGCGCTGCGCCCGGCCACGGCGCTGCGCGAGTCGTCGCCGGCGGTGCTGCGGCTGCTGCTGGCGCCGCTGCCCGGCAATGTGCTGTCGATCACCTTCCACAAGCGGCGCGGGCCGGTGCGGGACACGCCGCTGCTGCTGCGCCTGGACGGGATGGCAGCGGCCACGCGCGCAGCCGCCTGGCCTGTCCCGG  >  AM260480/1196432‑1196688
                                                                                                                                 |                                                                                                                               
gctgcagggcgtccaggggcaggcgcggcaggtgcaccgcgatccagtacggcatcggaagaagatggagaagacgattcagacaaggcaggtgctcctgccgggacaggccaggcggctgcgcgcgtgGCCGc                                                                                                                             <  1:87494‑M1/5‑1 (MQ=255)
cgcgGCCCGCCCCGAGGCGCTGCGCCGCCTGCAGGTGCTGGCGCAGGCCGGCGACGCGGTGGCATGGGCGCTGCGCCCGGCCACGGCGCTGCGCGAGTCGTCGCCGGCGGTGCTGCGGCTGCTGCTGGcgccgc                                                                                                                             <  1:705936/134‑1 (MQ=255)
           tccaggggcaggcgcggcaggtgcaccgcgatccagtacggcatcggaagaagatggagaagacgattcagacaaggcaggtgctcctgccgggacaggccaggcggctgcgcgcgtgGCCGCTGCCCGGCAAt                                                                                                                  >  1:808120‑M1/119‑134 (MQ=255)
                        ccgccTGCAGGTGCTGGCGCAGGCCGGCGACGCGGTGGCATGGGCGCTGCGCCCGGCCACGGCGCTGCGCGAGTCGTCGCCGGCGGTGCTGCGGCTGCTGCTGGCGCCGCTGCCCGGCAATGTGCTGTCGATCa                                                                                                     >  2:515985/1‑134 (MQ=255)
                                        gatccagtacggcatcggaagaagatggagaagacgattcagacaaggcaggtgctcctgccgggacaggccaggcggctgcgcgcgtgGCCGCTg                                                                                                                           >  1:835961‑M1/90‑96 (MQ=255)
                                        gatccagtacggcatcggaagaagatggagaagacgattcagacaaggcaggtgctcctgccgggacaggccaggcggctgcgcgcgtgGCCGCTg                                                                                                                           <  2:835961‑M1/7‑1 (MQ=255)
                                         cgcAGGCCGGCGACGCGGTGGCATGGGCGCTGCGCCCGGCCACGGCGCTGCGCGAGTCGTCGCCGGCGGTGCTGCGGCTGCTGCTGGCGCCGCTGCCCGGCAATGTGCTGTCGATCACCTTCCACAAGCGgcgc                                                                                    <  1:515985/134‑1 (MQ=255)
                                         cgcAGGCCGGCGACGCGGTGGCATGGGCGCTGCGCCCGGCCACGGCGCTGCGCGAGTCGTCGCCGGCGGTGCTGCGGCTGCTGCTGGCGCCGCTGCCCGGCAATGTGCTGTCGATCACCTTCCACAAGCGgcgc                                                                                    <  2:4788/134‑1 (MQ=255)
                                                                       tGCGCCCGGCCACGGCGCTGCGCGAGTCGTCGCCGGCGGTGCTGCGGCTGCTGCTGGCGCCGCTGCCCGGCAATGTGCTGTCGATCACCTTCCACAAGCGgcgc                                                                                    <  1:479197/104‑1 (MQ=255)
                                                                       tGCGCCCGGCCACGGCGCTGCGCGAGTCGTCGCCGGCGGTGCTGCGGCTGCTGCTGGCGCCGCTGCCCGGCAATGTGCTGTCGATCACCTTCCACAAGCGgcgc                                                                                    >  2:479197/1‑104 (MQ=255)
                                                                           cccGGCCACGGCGCTGCGCGAGTCGTCGCCGGCGGTGCTGCGGCTGCTGCTGGCGCCGCTGCCCGGCAATGTGCTGTCGATCACCTTCCACAAGCGGCGCGGGCCGGTGCGGGACACGCCGCTGCTGCTGCGcc                                                  >  1:525849/1‑134 (MQ=255)
                                                                                           gtgctcctgccgggacaggccaggcggctgcgcgcgtgGCCGCTGCCCGGCAATGTGCTGTCGATCACCTTCcac                                                                                             <  1:607162‑M1/37‑1 (MQ=255)
                                                                                           gtgctcctgccgggacaggccaggcggctgcgcgcgtgGCCGCTGCCCGGCAATGTGCTGTCGATCACCTTCcac                                                                                             >  2:607162‑M1/39‑75 (MQ=255)
                                                                                                        cggcggTGCTGCGGCTGCTGCTGGCGCCGCTGCCCGGCAATGTGCTGTCGATCACCTTCCACAAGCGGCGCGGGCCGGTGCGGGACACGCCGCTGCTGCTGCGCCTGGACGGGATGGCAGCGGCCAcgcgcg                       >  1:627368/1‑132 (MQ=255)
                                                                                                                  gcggctgcgcgcgtgGCCGCTGCCCGGCAATGTGCTGTCGATCACCTTCCACAAGCGGCGCGGGCCGGTGCGGGACACGCCGCTGCTGCTGCGCCTGGACGGGATGGCAGCGGCCACGCGCGCAGCCgcctggc           <  2:948382‑M1/119‑1 (MQ=255)
                                                                                                                            ctgGCGCCGCTGCCCGGCAATGTGCTGTCGATCACCTTCCACAAGCGGCGCGGGCCGGTGCGGGACACGCCGCTGCTGCTGCGCCTGGACGGGATGGCAGCGGCCACGCGCGCAGCCGCCTGGCCTGTCCCgg  <  2:525849/133‑1 (MQ=255)
                                                                                                                                 |                                                                                                                               
CGCGGCCCGCCCCGAGGCGCTGCGCCGCCTGCAGGTGCTGGCGCAGGCCGGCGACGCGGTGGCATGGGCGCTGCGCCCGGCCACGGCGCTGCGCGAGTCGTCGCCGGCGGTGCTGCGGCTGCTGCTGGCGCCGCTGCCCGGCAATGTGCTGTCGATCACCTTCCACAAGCGGCGCGGGCCGGTGCGGGACACGCCGCTGCTGCTGCGCCTGGACGGGATGGCAGCGGCCACGCGCGCAGCCGCCTGGCCTGTCCCGG  >  AM260480/1196432‑1196688

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.