New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	= 1262142	29 (1.060)	8 (0.340)	8/182	1.1	23.7%	coding (21/3237 nt)	acrB9	Cation/multidrug efflux pump
	?	AM260480	= 1262126	27 (1.160)					coding (5/3237 nt)	acrB9	Cation/multidrug efflux pump

GCCTGAGCGATGTTTGATTCCGTCGCTTATGGTAACCACGTGAACCCGCACACCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260480/1262032‑1262142 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgccatggcgggcACCATCAACTGCTTTGGGAGCGAAAAAAACTAGGGGCGCTGGGTGTGCGGGTTCACGTGGTTACCATAAGCGACGGAATCAAACATCGCTCAGGCCGGCTCCCTCTCCCCTCAGCGGGAGAGGG  <  AM260480/1262126‑1262003                                                                                                                                                                                                                                             GCCTGAGCGATGTTTGATTCCGTCGCTTATGGTAACCACGTGAACCCGCACACCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCACCATCAACTGCTTTGGGAGCG                                                                                                        >  2:559633/1‑133           TGTTTGATTCCGTCGCTTATGGTAACCACGTGAACCCGCACACCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCACCATCAACTGCTTTGGGAGCGAAAAAAACTAG                                                                                             <  1:559633/134‑1                                                   CACCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCACC                                                                                                                           <  2:716697/64‑1                                                            CCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCACCATCAACTGCTTTGGGAGCGAAAAAAACTAGGGGCGCTGGGTGCGCGGGTTCACGTGGTTACCATAAGCGACGGAATCA                                             >  2:430803/1‑133                                                                                CAAAGCAGTTGATGGTGCCCGCTATGGCGGGCACCATCAACTGCTTTGGGAGCGAAAAAAACTAGGGGCGCTGGGTGTGCGGGTTCACGTGGTTACCATAAGCGACGGAATCAAACATCGCTCAGGCCGGCTCC                        <  1:430803/134‑1                                                                                    GCAGTTGATGGTGCCCGCCATGGCGGGCACCATCAACTGCTTTGGGAGCGAAAAAAACTAGGGGCGCTGGGTGTGCGGGTTCACGTGGTTACCATAAGCGACGGAATCAAACATCGCTCAGGCCGGCTCCCTCT                    >  1:1015431/1‑134                                                                                      AGTTGATGGTGCCCGCCATGGCGGGCACCATCAACTGCTTTGGGAGCGAAAAAAACTAGGGGCGCTGGGTGTGCGGGTTCACGTGGTTACCATAAGCGACGGAATCAAACATCGCTCAGGCCGGCTCCCTCTCC                  <  2:1015431/134‑1                                                                                             GGTGCCCGCCATGGCGGGCACCATCAACTGCTTTGGGAGCGAAAAAAACTAGGGGCGCTGGGTG                                                                                 <  1:716697/64‑1                                                                                                      CATGGCGGGCACCATCAACTGCTTTGGGAGCGAAAAAAACTAGGGGCGCTGGGTGTGCGGGTTCACGTGGTTACCATAAGCGACGGAATCAAACATCGCTCAGGCCGGCTCCCTCTCCCCTCAGCGGGAGAGGG  >  2:388115/1‑134                                                                                                                                                                                                                                             GCCTGAGCGATGTTTGATTCCGTCGCTTATGGTAACCACGTGAACCCGCACACCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260480/1262032‑1262142 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgccatggcgggcACCATCAACTGCTTTGGGAGCGAAAAAAACTAGGGGCGCTGGGTGTGCGGGTTCACGTGGTTACCATAAGCGACGGAATCAAACATCGCTCAGGCCGGCTCCCTCTCCCCTCAGCGGGAGAGGG  <  AM260480/1262126‑1262003

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.