New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260480 = 126214229 (1.060)8 (0.340) 8/182 1.1 23.7% coding (21/3237 nt) acrB9 Cation/multidrug efflux pump
?AM260480 = 1262126 27 (1.160)coding (5/3237 nt) acrB9 Cation/multidrug efflux pump

GCTGAGGGGAGAGGGAGCCGGCCTGAGCGATGTTTGATTCCGTCGCTTATGGTAACCACGTGAACCCGCACACCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAATCTCTCTAAATTTTTTATCGACCGCCCCATCTTCGCGGGGGTGCTGTCGGTGCTGATCTTCCTGATTGGCGCCATATCGATGTTCAAGC  >  AM260480/1262012‑1262266
                                                                                                                                  |                                                                                                                            
gCTGAGGGGAGAGGGAGCCGGCCTGAGCGATGTTTGATTCCGTCGCTTATGGTAACCACGTGAACCCGCACACCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGgccgc                                                                                                                           >  1:242632/1‑134 (MQ=255)
         agagGGAGCCGGCCTGAGCGATGTTTGATTCCGTCGCTTATGGTAACCACGTGAACCCGCACACCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGc                                                                                                                  <  2:242632/134‑1 (MQ=255)
                gCCGGCCTGAGCGATGTTTGATTCCGTCGCTTATGGTAACCACGTGAACCCGCACACCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTg                                                                                                           >  2:779717/1‑134 (MQ=255)
                    gCCTGAGCGATGTTTGATTCCGTCGCTTATGGTAACCACGTGAACCCGCACACCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCaccatcaactgctttgggagcg                                                                                                        >  2:559633‑M1/1‑111 (MQ=255)
                            gATGTTTGATTCCGTCGCTTATGGTAACCACGTGAACCCGCACACCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGa                                                                                               <  1:779717/134‑1 (MQ=255)
                             aTGTTTGATTCCGTCGCTTATGGTAACCACGTGAACCCGCACACCCAGCGCCCCTAGTTTTTTTCGCTTCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGAt                                                                                              <  2:812487/134‑1 (MQ=255)
                              tGTTTGATTCCGTCGCTTATGGTAACCACGTGAACCCGCACACCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCaccatcaactgctttgggagcgaaaaaaactag                                                                                             <  1:559633‑M1/134‑34 (MQ=255)
                                  tGATTCCGTCGCTTATGGTAACCACGTGAACCCGCGCACCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAAtc                                                                                         >  2:633203/1‑134 (MQ=255)
                                   gATTCCGTCGCTTATGGTAACCACGTGAACCCGCACACCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAAtct                                                                                        >  1:745940/1‑134 (MQ=255)
                                    aTTCCGTCGCTTATGGTAACCACGTGAACCCGCGCACCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAAtct                                                                                        <  1:633203/133‑1 (MQ=255)
                                        cGTCGCTTATGGTAACCACGTGAACCCGCACACCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAATctctct                                                                                    <  1:526624/133‑1 (MQ=255)
                                            gCTTATGGTAACCACGTGAACCCGCACACCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAAtct                                                                                        >  2:412427/1‑125 (MQ=255)
                                            gCTTATGGTAACCACGTGAACCCGCACACCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAAtct                                                                                        <  1:412427/125‑1 (MQ=255)
                                                              aaCCCGCACACCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAATCTCTCTAAATTTTTTATCGAc                                                                     <  2:593655/126‑1 (MQ=255)
                                                              aaCCCGCACACCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAATCTCTCTAAATTTTTTATCGAc                                                                     >  1:593655/1‑126 (MQ=255)
                                                                    cacaCCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCa                                                                                                                         >  1:602221/1‑68 (MQ=255)
                                                                    cacaCCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCa                                                                                                                         <  2:602221/68‑1 (MQ=255)
                                                                      cacCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCacc                                                                                                                           <  2:716697‑M1/64‑4 (MQ=255)
                                                                           aGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAATCTCTCTAAATTTTTTATCGACCGCCCCATCTTCGCGGGGGTg                                                <  2:718710/134‑1 (MQ=255)
                                                                             cgcCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAATCTCTCTAAATTTTTTATCGACCGCCCCATCTTCGCGGGGGTg                                                >  2:223059/1‑132 (MQ=255)
                                                                             cgcCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAATCTCTCTAAATTTTTTATCGACCGCCCCATCTTCGCGGGGGTg                                                <  1:223059/132‑1 (MQ=255)
                                                                               ccccTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCaccatcaactgctttgggagcgaaaaaaactaggggcgctgggtgcgcgggttcacgtggttaccataagcgacggaatca                                             >  2:430803‑M1/1‑52 (MQ=255)
                                                                               ccccTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAAtct                                                                                        >  2:194962/1‑90 (MQ=255)
                                                                               ccccTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAAtct                                                                                        <  1:194962/90‑1 (MQ=255)
                                                                               ccccTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAATCTCTCTAAATTTTTTATCGACCGCCCCATCTTCGCGGGGGTGCTGt                                            >  1:626550/1‑134 (MQ=255)
                                                                                     gTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAAtct                                                                                        >  2:972233/1‑84 (MQ=255)
                                                                                     gTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAAtct                                                                                        <  1:972233/84‑1 (MQ=255)
                                                                                        tttttCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAATCTCTCTAAATTTTTTATCGACCGCCCCATCTTCGCgg                                                     <  2:202588/116‑1 (MQ=255)
                                                                                        tttttCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAATCTCTCTAAATTTTTTATCGACCGCCCCATCTTCGCgg                                                     >  1:202588/1‑116 (MQ=255)
                                                                                                   cAAAGCAGTTGATGGTGCCCGCTATGGCGGGCaccatcaactgctttgggagcgaaaaaaactaggggcgctgggtgtgcgggttcacgtggttaccataagcgacggaatcaaacatcgctcaggccggctcc                        <  1:430803‑M1/134‑103 (MQ=255)
                                                                                                       gCAGTTGATGGTGCCCGCCATGGCGGGCaccatcaactgctttgggagcgaaaaaaactaggggcgctgggtgtgcgggttcacgtggttaccataagcgacggaatcaaacatcgctcaggccggctccctct                    >  1:1015431‑M1/1‑28 (MQ=255)
                                                                                                         aGTTGATGGTGCCCGCCATGGCGGGCaccatcaactgctttgggagcgaaaaaaactaggggcgctgggtgtgcgggttcacgtggttaccataagcgacggaatcaaacatcgctcaggccggctccctctcc                  <  2:1015431‑M1/134‑109 (MQ=255)
                                                                                                              aTGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAATCTCTCTAAAtttttt                                                                           >  2:1002455/1‑72 (MQ=255)
                                                                                                              aTGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAATCTCTCTAAAtttttt                                                                           <  1:1002455/72‑1 (MQ=255)
                                                                                                                ggTGCCCGCCATGGCGGGCaccatcaactgctttgggagcgaaaaaaactaggggcgctgggtg                                                                                 <  1:716697‑M1/64‑46 (MQ=255)
                                                                                                                         cATGGCGGGCaccatcaactgctttgggagcgaaaaaaactaggggcgctgggtgtgcgggttcacgtggttaccataagcgacggaatcaaacatcgctcaggccggctccctctcccctcagcgggagaggg  >  2:388115‑M1/1‑10 (MQ=255)
                                                                                                                         cATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAATCTCTCTAAATTTTTTATCGACCGCCCCATCTTCGCGGGGGTGCTGTCGGTGCTGATCTTCCTGATTGGCGCCATATCGATg         <  2:453079/127‑1 (MQ=255)
                                                                                                                         cATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAATCTCTCTAAATTTTTTATCGACCGCCCCATCTTCGCGGGGGTGCTGTCGGTGCTGATCTTCCTGATTGGCGCCATATCGATg         >  1:453079/1‑127 (MQ=255)
                                                                                                                                  |                                                                                                                            
GCTGAGGGGAGAGGGAGCCGGCCTGAGCGATGTTTGATTCCGTCGCTTATGGTAACCACGTGAACCCGCACACCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAATCTCTCTAAATTTTTTATCGACCGCCCCATCTTCGCGGGGGTGCTGTCGGTGCTGATCTTCCTGATTGGCGCCATATCGATGTTCAAGC  >  AM260480/1262012‑1262266

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.