| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260480 | = 1262142 | 29 (1.060) | 8 (0.340) | 8/182 | 1.1 | 23.7% | coding (21/3237 nt) | acrB9 | Cation/multidrug efflux pump |
| ? | AM260480 | = 1262126 | 27 (1.160) | coding (5/3237 nt) | acrB9 | Cation/multidrug efflux pump | |||||
CCCTCTCCCGCTGAGGGGAGAGGGAGCCGGCCTGAGCGATGTTTGATTCCGTCGCTTATGGTAACCACGTGAACCCGCACACCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAATCTCTCTAAATTTTTTATCGACCGCCCCATCTTCGCGGGGGTGCTGTCGGTGCTGATCTTCCTGATTGGCGCC > AM260480/1262003‑1262250 | cccTCTCCCGCTGAGGGGAGAGGGAGCCGGCCTGAGCGATGTTTGATTCCGTCGCTTATGGTAACCACGTGAACCCGCACACCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTgcccgccatg > 2:388115‑M2/1‑124 (MQ=255) gCTGAGGGGAGAGGGAGCCGGCCTGAGCGATGTTTGATTCCGTCGCTTATGGTAACCACGTGAACCCGCACACCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGgccgc > 1:242632/1‑134 (MQ=255) ggAGAGGGAGCCGGCCTGAGCGATGTTTGATTCCGTCGCTTATGGTAACCACGTGAACCCGCACACCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTgcccgccatggcgggcaccatcaact < 2:1015431‑M2/134‑27 (MQ=255) agagGGAGCCGGCCTGAGCGATGTTTGATTCCGTCGCTTATGGTAACCACGTGAACCCGCACACCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTgcccgccatggcgggcaccatcaactgc > 1:1015431‑M2/1‑106 (MQ=255) agagGGAGCCGGCCTGAGCGATGTTTGATTCCGTCGCTTATGGTAACCACGTGAACCCGCACACCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGc < 2:242632/134‑1 (MQ=255) ggAGCCGGCCTGAGCGATGTTTGATTCCGTCGCTTATGGTAACCACGTGAACCCGCACACCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTgcccgccatagcgggcaccatcaactgctttg < 1:430803‑M2/134‑33 (MQ=255) gCCGGCCTGAGCGATGTTTGATTCCGTCGCTTATGGTAACCACGTGAACCCGCACACCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTg > 2:779717/1‑134 (MQ=255) gCCTGAGCGATGTTTGATTCCGTCGCTTATGGTAACCACGTGAACCCGCACACCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCaccatcaactgctttgggagcg > 2:559633‑M1/1‑111 (MQ=255) gATGTTTGATTCCGTCGCTTATGGTAACCACGTGAACCCGCACACCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGa < 1:779717/134‑1 (MQ=255) aTGTTTGATTCCGTCGCTTATGGTAACCACGTGAACCCGCACACCCAGCGCCCCTAGTTTTTTTCGCTTCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGAt < 2:812487/134‑1 (MQ=255) tGTTTGATTCCGTCGCTTATGGTAACCACGTGAACCCGCACACCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCaccatcaactgctttgggagcgaaaaaaactag < 1:559633‑M1/134‑34 (MQ=255) tGATTCCGTCGCTTATGGTAACCACGTGAACCCGCGCACCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTgcccgccatggcgggcaccatcaactgctttgggagcgaaaaaaactagggg > 2:430803‑M2/1‑81 (MQ=255) tGATTCCGTCGCTTATGGTAACCACGTGAACCCGCGCACCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAAtc > 2:633203/1‑134 (MQ=255) gATTCCGTCGCTTATGGTAACCACGTGAACCCGCACACCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAAtct > 1:745940/1‑134 (MQ=255) aTTCCGTCGCTTATGGTAACCACGTGAACCCGCGCACCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAAtct < 1:633203/133‑1 (MQ=255) cGTCGCTTATGGTAACCACGTGAACCCGCACACCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAATctctct < 1:526624/133‑1 (MQ=255) gCTTATGGTAACCACGTGAACCCGCACACCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAAtct > 2:412427/1‑125 (MQ=255) gCTTATGGTAACCACGTGAACCCGCACACCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAAtct < 1:412427/125‑1 (MQ=255) aaCCCGCACACCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAATCTCTCTAAATTTTTTATCGAc > 1:593655/1‑126 (MQ=255) aaCCCGCACACCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAATCTCTCTAAATTTTTTATCGAc < 2:593655/126‑1 (MQ=255) cacaCCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCa > 1:602221/1‑68 (MQ=255) cacaCCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCa < 2:602221/68‑1 (MQ=255) cacCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTgcccgccatggcgggcacc < 1:716697‑M2/64‑20 (MQ=255) cacCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCacc < 2:716697‑M1/64‑4 (MQ=255) aGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAATCTCTCTAAATTTTTTATCGACCGCCCCATCTTCGCGGGGGTg < 2:718710/134‑1 (MQ=255) cgcCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAATCTCTCTAAATTTTTTATCGACCGCCCCATCTTCGCGGGGGTg > 2:223059/1‑132 (MQ=255) cgcCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAATCTCTCTAAATTTTTTATCGACCGCCCCATCTTCGCGGGGGTg < 1:223059/132‑1 (MQ=255) ccccTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCaccatcaactgctttgggagcgaaaaaaactaggggcgctgggtgcgcgggttcacgtggttaccataagcgacggaatca > 2:430803‑M1/1‑52 (MQ=255) ccccTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAAtct > 2:194962/1‑90 (MQ=255) ccccTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAAtct < 1:194962/90‑1 (MQ=255) ccccTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAATCTCTCTAAATTTTTTATCGACCGCCCCATCTTCGCGGGGGTGCTGt > 1:626550/1‑134 (MQ=255) cTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTgcccgccatggcgggcaccatcaactgctttgggagcgaaaaaaactaggggcgctgggtgtgcgggttcacgtggttaccataagcgacggaatcaaaca < 1:559633‑M2/134‑102 (MQ=255) gTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAAtct < 1:972233/84‑1 (MQ=255) gTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAAtct > 2:972233/1‑84 (MQ=255) tttttCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAATCTCTCTAAATTTTTTATCGACCGCCCCATCTTCGCgg < 2:202588/116‑1 (MQ=255) tttttCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAATCTCTCTAAATTTTTTATCGACCGCCCCATCTTCGCgg > 1:202588/1‑116 (MQ=255) cGCTCCCAAAGCAGTTGATGGTgcccgccatggcgggcaccatcaactgctttgggagcgaaaaaaactaggggcgctgggtgtgcgggttcacgtggttaccataagcgacggaatcaaacatcgctcaggc > 2:559633‑M2/1‑22 (MQ=255) cAAAGCAGTTGATGGTGCCCGCTATGGCGGGCaccatcaactgctttgggagcgaaaaaaactaggggcgctgggtgtgcgggttcacgtggttaccataagcgacggaatcaaacatcgctcaggccggctcc < 1:430803‑M1/134‑103 (MQ=255) gCAGTTGATGGTGCCCGCCATGGCGGGCaccatcaactgctttgggagcgaaaaaaactaggggcgctgggtgtgcgggttcacgtggttaccataagcgacggaatcaaacatcgctcaggccggctccctct > 1:1015431‑M1/1‑28 (MQ=255) aGTTGATGGTGCCCGCCATGGCGGGCaccatcaactgctttgggagcgaaaaaaactaggggcgctgggtgtgcgggttcacgtggttaccataagcgacggaatcaaacatcgctcaggccggctccctctcc < 2:1015431‑M1/134‑109 (MQ=255) aTGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAATCTCTCTAAAtttttt > 2:1002455/1‑72 (MQ=255) aTGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAATCTCTCTAAAtttttt < 1:1002455/72‑1 (MQ=255) ggTgcccgccatggcgggcaccatcaactgctttgggagcgaaaaaaactaggggcgctgggtg < 2:716697‑M2/64‑62 (MQ=255) ggTGCCCGCCATGGCGGGCaccatcaactgctttgggagcgaaaaaaactaggggcgctgggtg < 1:716697‑M1/64‑46 (MQ=255) | CCCTCTCCCGCTGAGGGGAGAGGGAGCCGGCCTGAGCGATGTTTGATTCCGTCGCTTATGGTAACCACGTGAACCCGCACACCCAGCGCCCCTAGTTTTTTTCGCTCCCAAAGCAGTTGATGGTGCCCGCCATGGCGGGCCGCCAGGGGAGCGTTTTTGCAGAGACCAAGATGAATCTCTCTAAATTTTTTATCGACCGCCCCATCTTCGCGGGGGTGCTGTCGGTGCTGATCTTCCTGATTGGCGCC > AM260480/1262003‑1262250 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |