New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	1772445 =	12 (0.440)	3 (0.120)	3/190	2.2	20.9%	coding (3215/5862 nt)	uvrA2	Excinuclease ABC, ATPase subunit (A2)
	?	AM260480	1772482 =	12 (0.490)					coding (3178/5862 nt)	uvrA2	Excinuclease ABC, ATPase subunit (A2)

CGCATCGTCAATGCGCATGAGCACAACCTGAAGGCGCTCAACGTCGATATTCCGCACGGCAAGTTCAACGTGGTCACCGGTGTGTCCGGATCGGGCAAGTCGACGCTGGCCTTCGACATCCTGTTCCACGAAGGCCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260480/1772584‑1772445 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaaggccagcgTCGACTTGCCCGATCCGGACACACCGGTGACCACGTTGAACTTGCCGTGCGGAATATCGACGTTGAGCGCCTTCAGGTTGTGCTCATGCGCATTGACGATGCGCACCACG  >  AM260480/1772482‑1772591                                                                                                                                                                                                                                                            CGCATCGTCAATGCGCATGAGCACAACCTGAAGGCGCTCAACGTCGATATTCCGCACGGCAAGTTCAACGTGGTCACCGGTGTGTCCGGATCGGGCAAGTCGACGCTGGCCTTCGACATCCTGTTCCACGAAGG                                                                                                                      >  2:554974/1‑134            TGCGCATGAGCACAACCTGAAGGCGCTCAACGTCGATATTCCGCACGGCAAGTTCAACGTGGTCACCGGTGTGTCCGGATCGGGCAAGTCGACGCTGGCCTTCGACATCCTGTTCCACGAAGGCCAGCGTCGAC                                                                                                           <  1:554974/134‑1                                         ACGTCGATATTCCGCACGGCAAGTTCAACGTGGTCACCGGTGTGTCCGGATCGGGCAAGTCGACGCTGGCCTTCGACATCCTGTTCCACGAAGGCC                                                                                                                    >  1:522123/1‑96                                         ACGTCGATATTCCGCACGGCAAGTTCAACGTGGTCACCGGTGTGTCCGGATCGGGCAAGTCGACGCTGGCCTTCGACATCCTGTTCCACGAAGGCC                                                                                                                    <  2:522123/96‑1                                         ACGTCGATATTCCGCACGGCAAGTTCAACGTGGTCACCGGTGTGTCCGGATCGGGCAAGTCGACGCTGGCCTTCGACATCCTGTTCCACGAAGG                                                                                                                      <  1:322414/94‑1                                         ACGTCGATATTCCGCACGGCAAGTTCAACGTGGTCACCGGTGTGTCCGGATCGGGCAAGTCGACGCTGGCCTTCGACATCCTGTTCCACGAAGG                                                                                                                      >  2:322414/1‑94                                                                                                              CCTTCGACATCCTGTTCCACGAAGGCCAGCGTCGACTTGCCCGATCCGGACACACCGGTGACCACGTTGAACTTGCCGTGCGGAATATCGACGT                                                 <  1:477300/94‑1                                                                                                              CCTTCGACATCCTGTTCCACGAAGGCCAGCGTCGACTTGCCCGATCCGGACACACCGGTGACCACGTTGAACTTGCCGTGCGGAATATCGACGT                                                 >  2:477300/1‑94                                                                                                                                     GGCCAGCGTCGACTTGCCCGATCCGGACACACCGGTGACCACGTTGAACTTGCCGTGCGGAATATCGACGTTGAGCGCCTTCAGGTTGTGCTCATGCGCATTGACGATGCGCACCACG  >  1:184020/1‑118                                                                                                                                     GGCCAGCGTCGACTTGCCCGATCCGGACACACCGGTGACCACGTTGAACTTGCCGTGCGGAATATCGACGTTGAGCGCCTTCAGGTTGTGCTCATGCGCATTGACGATGCGCACCACG  <  2:184020/118‑1                                                                                                                                                                                                                                                            CGCATCGTCAATGCGCATGAGCACAACCTGAAGGCGCTCAACGTCGATATTCCGCACGGCAAGTTCAACGTGGTCACCGGTGTGTCCGGATCGGGCAAGTCGACGCTGGCCTTCGACATCCTGTTCCACGAAGGCCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260480/1772584‑1772445 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaaggccagcgTCGACTTGCCCGATCCGGACACACCGGTGACCACGTTGAACTTGCCGTGCGGAATATCGACGTTGAGCGCCTTCAGGTTGTGCTCATGCGCATTGACGATGCGCACCACG  >  AM260480/1772482‑1772591

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.