New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	1772445 =	12 (0.440)	3 (0.120)	3/190	2.2	20.9%	coding (3215/5862 nt)	uvrA2	Excinuclease ABC, ATPase subunit (A2)
	?	AM260480	1772482 =	12 (0.490)					coding (3178/5862 nt)	uvrA2	Excinuclease ABC, ATPase subunit (A2)

TGCGGCCGCCGCGCGACAGGCGCTGCTCGATCGCCACCGTCGGCGGGATGCCGTAGACCGCATCCACCTCGGGCCGGCCCGCCGGCTGCACGATGGAACGCGCATAGGCATTGAGCGACTCCAGGTAGCGGCGCTGGCCTTCGTGGAACAGGATGTCGAAGGCCAGCGTCGACTTGCCCGATCCGGACACACCGGTGACCACGTTGAACTTGCCGTGCGGAATATCGACGTTGAGCGCCTTCAGGTTGTGCTCATGCGCA  >  AM260480/1772314‑1772573                                                                                                                                    |                                                                                                                                 tGCGGCCGCCGCGCGACAGGCGCTGCTCGATCGCCACCGTCGGCGGGATGCCGTAGACCGCATCCACCTCGGGCCGGCCCGCCGGCTGCACGATGGAACGCGCATAGGCATTGAGCGACTCCAGGTAGCGgcgc                                                                                                                                >  1:708159/1‑134 (MQ=255)           gcgcgACAGGCGCTGCTCGATCGCCACCGTCGGCGGGATGCCGTAGACCGCATCCACCTCGGGCCGGCCCGCCGGCTGCACGATGGAACGCGCATAGGCATTGAGCGACTCCAGGTAGCGGCGCTGGCCTTCGt                                                                                                                      >  2:965013/1‑134 (MQ=255)                     cgcTGCTCGATCGCCACCGTCGGCGGGATGCCGTAGACCGCATCCACCTCGGGCCGGCCCGCCGGCTGCACGATGGAACGCGCATAGGCATTGAGCGACTCCAGGTAGCGGCGCTGGCCTTCGTGGAACAGGAt                                                                                                            <  1:688946/134‑1 (MQ=255)                      cgtggtgcgcatcgtcaatgcgcatgagcacaacctgaaggcgctcaacgtcgatattccgcacggcaagttcaacgtggtcaccggtgtgtccggatcgggcaagtcgaCGCTGGcc                                                                                                                           >  1:184020‑M1/111‑118 (MQ=255)                      cgtggtgcgcatcgtcaatgcgcatgagcacaacctgaaggcgctcaacgtcgatattccgcacggcaagttcaacgtggtcaccggtgtgtccggatcgggcaagtcgaCGCTGGcc                                                                                                                           <  2:184020‑M1/8‑1 (MQ=255)                                   cACCGTCGGCGGGATGCCGTAGACCGCATCCACCTCGGGCCGGCCCGCCGGCTGCACGATGGAACGCGCATAGGCATTGAGCGACTCCAGGTAGCGGCGCTGGCCTTCGTGGAACAGGATGTCGAAGGCCAGCg                                                                                              >  1:767847/1‑134 (MQ=255)                                        tCGGCGGGATGCCGTAGACCGCATCCACCTCGGGCCGGCCCGCCGGCTGCACGATGGAACGCGCATAGGCATTGAGCGACTCCAGGTAGCGGCGCTGGCCTTCGTGGAACAGGATGTCGAAGGCCAGCGTCGAc                                                                                         <  2:708159/134‑1 (MQ=255)                                                      tAGACCGCATCCACCTCGGGCCGGCCCGCCGGCTGCACGATGGAACGCGCATAGGCATTGAGCGACTCCAGGTAGCGGCGCTGGCCTTCGTGGAACAGGATGTCGAAGGCCAGCGTCGACTTGCCCGATCCGGa                                                                           <  1:119466/134‑1 (MQ=255)                                                               tCCACCTCGGGCCGGCCCGCCGGCTGCACGATGGAACGCGCATAGGCATTGAGCGACTCCAGGTAGCGGCGCTGGCCTTCGTGGAACAGGATGTCGAAGGCCAGCGTCGACTTGCCCGATCCGGACACACCGGt                                                                  >  1:1019363/1‑134 (MQ=255)                                                                     acgtcgatattccgcacggcaagttcaacgtggtcaccggtgtgtccggatcgggcaagtcgaCGCTGGCCTTCGTGGAACAGGATGTCGAAgg                                                                                                    <  1:477300‑M1/31‑1 (MQ=255)                                                                     acgtcgatattccgcacggcaagttcaacgtggtcaccggtgtgtccggatcgggcaagtcgaCGCTGGCCTTCGTGGAACAGGATGTCGAAgg                                                                                                    >  2:477300‑M1/64‑94 (MQ=255)                                                                                          aCGATGGAACGCGCATAGGCATTGAGCGACTCCAGGTAGCGGCGCTGGCCTTCGTGGAACAGGATGTCGAAGGCCAGCGTCGACTTGCCCGATCCGGACACACCGGTGACCACGTTGAACTTGCCGTGCGGAat                                       <  1:43673/134‑1 (MQ=255)                                                                                                                          cAGGTAGCGGCGCTGGCCTTCGTGGAACAGGATGTCGAAGGCCAGCGTCGACtt                                                                                       <  1:890659/54‑1 (MQ=255)                                                                                                                          cAGGTAGCGGCGCTGGCCTTCGTGGAACAGGATGTCGAAGGCCAGCGTCGACtt                                                                                       >  2:890659/1‑54 (MQ=255)                                                                                                                          cAGGTAGCGGCGCTGGCCTTCGTGGAACAGGATGTCGAAGGCCAGCGTCGACTTGCCCGATCCGGACACACCGGTGACCACGTTGAACTTGCCGTGCGGAATATCGACGTTGAGCGCCTTCAGGTtgt             >  1:266480/1‑128 (MQ=255)                                                                                                                          cAGGTAGCGGCGCTGGCCTTCGTGGAACAGGATGTCGAAGGCCAGCGTCGACTTGCCCGATCCGGACACACCGGTGACCACGTTGAACTTGCCGTGCGGAATATCGACGTTGAGCGCCTTCAGGTtgt             <  2:266480/128‑1 (MQ=255)                                                                                                                               gtcgaCGCTGGCCTTCGTGGAACAGGATGTCGAAGGCCAGCGTCGACTTGCCCGATCCGGACACACCGGTGACCACGTTGAACTTGCCGTGCGGAATATCGACGTTGAGCGCCTTCAGGTTGTGCTCATGCGCa  <  1:554974‑M1/129‑1 (MQ=255)                                                                                                                                    |                                                                                                                                 TGCGGCCGCCGCGCGACAGGCGCTGCTCGATCGCCACCGTCGGCGGGATGCCGTAGACCGCATCCACCTCGGGCCGGCCCGCCGGCTGCACGATGGAACGCGCATAGGCATTGAGCGACTCCAGGTAGCGGCGCTGGCCTTCGTGGAACAGGATGTCGAAGGCCAGCGTCGACTTGCCCGATCCGGACACACCGGTGACCACGTTGAACTTGCCGTGCGGAATATCGACGTTGAGCGCCTTCAGGTTGTGCTCATGCGCA  >  AM260480/1772314‑1772573

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.