New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	1772445 =	12 (0.440)	3 (0.120)	3/190	2.2	20.9%	coding (3215/5862 nt)	uvrA2	Excinuclease ABC, ATPase subunit (A2)
	?	AM260480	1772482 =	12 (0.490)					coding (3178/5862 nt)	uvrA2	Excinuclease ABC, ATPase subunit (A2)

TCGGCGGGATGCCGTAGACCGCATCCACCTCGGGCCGGCCCGCCGGCTGCACGATGGAACGCGCATAGGCATTGAGCGACTCCAGGTAGCGGCGCTGGCCTTCGTGGAACAGGATGTCGAAGGCCAGCGTCGACTTGCCCGATCCGGACACACCGGTGACCACGTTGAACTTGCCGTGCGGAATATCGACGTTGAGCGCCTTCAGGTTGTGCTCATGCGCATTGACGATGCGCACCACGTCCTCGC  >  AM260480/1772353‑1772598                                                                                                                                  |                                                                                                                     tgcgcatgagcacaacctgaaggcgctcaacgtcgatattccgcacggcaagttcaacgtggtcaccggtgtgtccggatcgggcaagtcgacgctggccttcgacatcctgttccacgaaggccagcgTCGAc                                                                                                                  <  1:554974‑M2/5‑1 (MQ=255) tCGGCGGGATGCCGTAGACCGCATCCACCTCGGGCCGGCCCGCCGGCTGCACGATGGAACGCGCATAGGCATTGAGCGACTCCAGGTAGCGGCGCTGGCCTTCGTGGAACAGGATGTCGAAGGCCAGCGTCGAc                                                                                                                  <  2:708159/134‑1 (MQ=255)               tAGACCGCATCCACCTCGGGCCGGCCCGCCGGCTGCACGATGGAACGCGCATAGGCATTGAGCGACTCCAGGTAGCGGCGCTGGCCTTCGTGGAACAGGATGTCGAAGGCCAGCGTCGACTTGCCCGATCCGGa                                                                                                    <  1:119466/134‑1 (MQ=255)                        tCCACCTCGGGCCGGCCCGCCGGCTGCACGATGGAACGCGCATAGGCATTGAGCGACTCCAGGTAGCGGCGCTGGCCTTCGTGGAACAGGATGTCGAAGGCCAGCGTCGACTTGCCCGATCCGGACACACCGGt                                                                                           >  1:1019363/1‑134 (MQ=255)                                                   aCGATGGAACGCGCATAGGCATTGAGCGACTCCAGGTAGCGGCGCTGGCCTTCGTGGAACAGGATGTCGAAGGCCAGCGTCGACTTGCCCGATCCGGACACACCGGTGACCACGTTGAACTTGCCGTGCGGAat                                                                <  1:43673/134‑1 (MQ=255)                                                                                   cAGGTAGCGGCGCTGGCCTTCGTGGAACAGGATGTCGAAGGCCAGCGTCGACtt                                                                                                                >  2:890659/1‑54 (MQ=255)                                                                                   cAGGTAGCGGCGCTGGCCTTCGTGGAACAGGATGTCGAAGGCCAGCGTCGACtt                                                                                                                <  1:890659/54‑1 (MQ=255)                                                                                   cAGGTAGCGGCGCTGGCCTTCGTGGAACAGGATGTCGAAGGCCAGCGTCGACTTGCCCGATCCGGACACACCGGTGACCACGTTGAACTTGCCGTGCGGAATATCGACGTTGAGCGCCTTCAGGTtgt                                      <  2:266480/128‑1 (MQ=255)                                                                                   cAGGTAGCGGCGCTGGCCTTCGTGGAACAGGATGTCGAAGGCCAGCGTCGACTTGCCCGATCCGGACACACCGGTGACCACGTTGAACTTGCCGTGCGGAATATCGACGTTGAGCGCCTTCAGGTtgt                                      >  1:266480/1‑128 (MQ=255)                                                                                        gtcgaCGCTGGCCTTCGTGGAACAGGATGTCGAAGGCCAGCGTCGACTTGCCCGATCCGGACACACCGGTGACCACGTTGAACTTGCCGTGCGGAATATCGACGTTGAGCGCCTTCAGGTTGTGCTCATGCGCa                           <  1:554974‑M1/129‑1 (MQ=255)                                                                                                 GGCCTTCGTGGAACAGGATGTCGAAGGCCAGCGTCGACTTGCCCGATCCGGACACACCGGTGACCACGTTGAACTTGCCGTGCGGAATATCGACGt                                                        >  1:522123‑M1/1‑96 (MQ=255)                                                                                                 GGCCTTCGTGGAACAGGATGTCGAAGGCCAGCGTCGACTTGCCCGATCCGGACACACCGGTGACCACGTTGAACTTGCCGTGCGGAATATCGACGt                                                        <  2:522123‑M1/96‑1 (MQ=255)                                                                                                   ccttcgacatcctgttccacgaaggccagcgTCGACTTGCCCGATCCGGACACACCGGTGACCACGTTGAACTTGCCGTGCGGAATATCGACGt                                                        <  1:477300‑M2/63‑1 (MQ=255)                                                                                                   ccttcgacatcctgttccacgaaggccagcgTCGACTTGCCCGATCCGGACACACCGGTGACCACGTTGAACTTGCCGTGCGGAATATCGACGt                                                        >  2:477300‑M2/32‑94 (MQ=255)                                                                                                   CCTTCGTGGAACAGGATGTCGAAGGCCAGCGTCGACTTGCCCGATCCGGACACACCGGTGACCACGTTGAACTTGCCGTGCGGAATATCGACGt                                                        <  1:322414‑M1/94‑1 (MQ=255)                                                                                                   CCTTCGTGGAACAGGATGTCGAAGGCCAGCGTCGACTTGCCCGATCCGGACACACCGGTGACCACGTTGAACTTGCCGTGCGGAATATCGACGt                                                        >  2:322414‑M1/1‑94 (MQ=255)                                                                                                   CCTTCGTGGAACAGGATGTCGAAGGCCAGCGTCGACTTGCCCGATCCGGACACACCGGTGACCACGTTGAACTTGCCGTGCGGAATATCGACGTTGAGCGCCTTCAGGTTGTGCTCATGCGCATTGACGATgcg                >  2:554974‑M1/1‑134 (MQ=255)                                                                                                         tGGAACAGGATGTCGAAGGCCAGCGTCGACTTGCCCGATCCGGACACACCGGTGACCACGTTGAACTTGCCGTGCGGAATATCGACGTTGAGCGCCTTCAGGTTGTGCTCATGCGCATTGACGATGCGcaccac          <  2:1019363/134‑1 (MQ=255)                                                                                                           gAACAGGATGTCGAAGGCCAGCGTCGACTTGCCCGATCCGGACACACCGGTGACCACGTTGAACTTGCCGTGCGGAATATCGACGTTGAGCGCCTTCAGGTTGTGCTCATGCGCATTGAc                      >  1:320534/1‑120 (MQ=255)                                                                                                           gAACAGGATGTCGAAGGCCAGCGTCGACTTGCCCGATCCGGACACACCGGTGACCACGTTGAACTTGCCGTGCGGAATATCGACGTTGAGCGCCTTCAGGTTGTGCTCATGCGCATTGAc                      <  2:320534/120‑1 (MQ=255)                                                                                                                 gATGTCGAAGGCCAGCGTCGACTTGCCCGATCCGGACACACCGGTGACCACGTTGAACTTGCCGTGCGGAATATCGACGTTGAGCGCCTTCAGGTTGTGCTCATGCGCATTGACGATGCGCACCACGTCCTCGc  >  1:660210/1‑134 (MQ=255)                                                                                                                          ggccagcgTCGACTTGCCCGATCCGGACACACCGGTGACCACGTTGAACTTGCCGTGCGGAATATCGACGTTGAGCGCCTTCAGGTTGTGCTCATGCGCATTGACGATGCGCACCACg         <  2:184020‑M2/110‑1 (MQ=255)                                                                                                                          ggccagcgTCGACTTGCCCGATCCGGACACACCGGTGACCACGTTGAACTTGCCGTGCGGAATATCGACGTTGAGCGCCTTCAGGTTGTGCTCATGCGCATTGACGATGCGCACCACg         >  1:184020‑M2/9‑118 (MQ=255)                                                                                                                                  |                                                                                                                     TCGGCGGGATGCCGTAGACCGCATCCACCTCGGGCCGGCCCGCCGGCTGCACGATGGAACGCGCATAGGCATTGAGCGACTCCAGGTAGCGGCGCTGGCCTTCGTGGAACAGGATGTCGAAGGCCAGCGTCGACTTGCCCGATCCGGACACACCGGTGACCACGTTGAACTTGCCGTGCGGAATATCGACGTTGAGCGCCTTCAGGTTGTGCTCATGCGCATTGACGATGCGCACCACGTCCTCGC  >  AM260480/1772353‑1772598

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.