New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	= 2305176	15 (0.550)	5 (0.190)	5/208	1.8	21.5%	coding (1465/2256 nt)	cheA2Y2	chemotaxis specific sensory transducer kinase,group IIIA, containing a receiver domain (hybrid)
	?	AM260480	2305200 =	22 (0.820)					coding (1489/2256 nt)	cheA2Y2	chemotaxis specific sensory transducer kinase,group IIIA, containing a receiver domain (hybrid)

CGTGGCAGCCTGCGCCTGACGCAGCAGCCGGGCCAGGGCCTGCACTTCCGGATGGAGTTGCCACTGACGCTGTCGGTGGTGCGCGCTCTGCTGGTGGAGGTCGCGGGCGAAGCCTATGCCTTCCCGCTGGGCCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260480/2305041‑2305176 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgCGCAGCGAGATCGAGCAGACCGAAGGG  >  AM260480/2305200‑2305226                                                                                                                                                                     CGTGGCAGCCTGCGCCTGACGCAGCAGCCGGGCCAGGGCCTGCACTTCCGGATGGAGTTGCCACTGACGCTGTCGGTGGTGCGCGCTCTGCTGGTGGAGGTCGCGGGCGAAGCCTATGCCTTCCCGCTGGGCCG                               >  2:619390/1‑134              GCCTGACGCAGCAGCCGGGCCAGGGCCTGCACTTCCGGATGGAGTTGCCACTGACGCTGTCGGTGGTGCGCGCTCTGCTGGTGGAGGTCGCGGGCGAAGCCTATGCCTTCCCGCTGGGCCGCGCGCAGCGAGAT                  <  1:75857/134‑1                                                            GCCACTGACGCTGTCGGTGGTGCGCGCTCTGCTGGTGGAGGTCGCGGGCGAAGCCTATGCCTTCCCGCTGGGCCGCGCGCAGCGAGATCGAG              >  1:562250/1‑92                                                            GCCACTGACGCTGTCGGTGGTGCGCGCTCTGCTGGTGGAGGTCGCGGGCGAAGCCTATGCCTTCCCGCTGGGCCGCGCGCAGCGAGATCGAG              <  2:562250/92‑1                                                                                                     TCGCGGGCGAAGCCTATGCCTTCCCGCTGGGCCGCGCGCAGCGAGATCGAGCAGACCGAAGGG  >  1:542887/1‑63                                                                                                     TCGCGGGCGAAGCCTATGCCTTCCCGCTGGGCCGCGCGCAGCGAGATCGAGCAGACCGAAGGG  <  2:542887/63‑1                                                                                                                                                                     CGTGGCAGCCTGCGCCTGACGCAGCAGCCGGGCCAGGGCCTGCACTTCCGGATGGAGTTGCCACTGACGCTGTCGGTGGTGCGCGCTCTGCTGGTGGAGGTCGCGGGCGAAGCCTATGCCTTCCCGCTGGGCCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260480/2305041‑2305176 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgCGCAGCGAGATCGAGCAGACCGAAGGG  >  AM260480/2305200‑2305226

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.