New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	= 2305176	15 (0.550)	5 (0.190)	5/208	1.8	21.5%	coding (1465/2256 nt)	cheA2Y2	chemotaxis specific sensory transducer kinase,group IIIA, containing a receiver domain (hybrid)
	?	AM260480	2305200 =	22 (0.820)					coding (1489/2256 nt)	cheA2Y2	chemotaxis specific sensory transducer kinase,group IIIA, containing a receiver domain (hybrid)

CGGGCCAGGGCCTGCACTTCCGGATGGAGTTGCCACTGACGCTGTCGGTGGTGCGCGCTCTGCTGGTGGAGGTCGCGGGCGAAGCCTATGCCTTCCCGCTGGGCCGCGTGCTGCGCGCGGCCTCGGTGGCGCGCAGCGAGATCGAGCAGACCGAAGGGCACCAGCATTTCCGCCACGAAGGCCGCGCCATCGGGCTGGTCAGCGCGGCGCAGGTGCTGCAACGCCCCGAGGCTGACGCTGCCAATGCGCACGCGCAAG  >  AM260480/2305069‑2305326                                                                                                                                    |                                                                                                                               cGGGCCAGGGCCTGCACTTCCGGATGGAGTTGCCACTGACGCTGTCGGTGGTGCGCGCTCTGCTGGTGGAGGTCGCGGGCGAAGCCTATGCCTTCCCGCTGGGCCGCGTGCTGCGCGCGGCCTCGGTGgcgcgc                                                                                                                              <  2:474817/134‑1 (MQ=255)         gcctgacgcagcagccgggccagggcctgcacttccggatggagttgccactgacgctgtcggtggtgcgcgctctgctggtggaggtcgcgggcgaagcctatgccttcccgctgggccgcgCGCAGCGAGAt                                                                                                                      <  1:75857‑M2/11‑1 (MQ=255)                                          cTGTCGGTGGTGCGCGCTCTGCTGGTGGAGGTCGCGGGCGAAGCCTATGCCTTCCCGCTGGGCCGCGTGCTGCGCGCGGCCTCGGTGGCGCGCAGCGAGATCGAGCAGACCGAAGGGCACCAGCATTTCCGCCa                                                                                     >  1:723237/1‑134 (MQ=255)                                                 tggtgCGCGCTCTGCTGGTGGAGGTCGCGGGCGAAGCCTATGCCTTCCCGCTGGGCCGCGTGCTGCGCGCGGCCTCGGTGGCGCGCAGCGAGATCGAGCAGACCGAAGGGCACCAGCATTTCCGCCACGAAGGc                                                                              >  1:753545/1‑134 (MQ=255)                                                       gccactgacgctgtcggtggtgcgcgctctgctggtggaggtcgcgggcgaagcctatgccttcccgctgggccgcgCGCAGCGAGATCGAg                                                                                                                  >  1:562250‑M2/78‑92 (MQ=255)                                                       gccactgacgctgtcggtggtgcgcgctctgctggtggaggtcgcgggcgaagcctatgccttcccgctgggccgcgCGCAGCGAGATCGAg                                                                                                                  <  2:562250‑M2/15‑1 (MQ=255)                                                                     gAGGTCGCGGGCGAAGCCTATGCCTTCCCGCTGGGCCGCGTGCTGCGCGCGGCCTCGGTGGCGCGCAGCGAGATCGAGCAGACCGAAGGGCACCAGCATTTCCGCCACGAAGGCCGCGCCATCGGGCTGGTCa                                                           <  1:366390/133‑1 (MQ=255)                                                                       ggTCGCGGGCGAAGCCTATGCCTTCCCGCTGGGCCGCGTGCTGCGCGCGGCCTCGGTGGCGCGCAGCGAGATCGAGc                                                                                                                 <  1:457669/77‑1 (MQ=255)                                                                       ggTCGCGGGCGAAGCCTATGCCTTCCCGCTGGGCCGCGTGCTGCGCGCGGCCTCGGTGGCGCGCAGCGAGATCGAGc                                                                                                                 >  2:457669/1‑77 (MQ=255)                                                                         tCGCGGGCGAAGCCTATGCCTTCCCGCTGGGCCGCGTGCTGCGCGCGGCCTCGGTGGCGCGCAGCGAGATCGAGCAGACCGAAGGGCACCAGCATTTCCGCCACGAAGGCCGCGCCATCGGGCTGGTCAGcgcg                                                      <  1:662431/134‑1 (MQ=255)                                                                         tCGCGGGCGAAGCCTATGCCTTCCCGCTGGGCCGCGTGCTGCGCGCGGCCTCGGTGGCGCGCAGCGAGATCGAGCAGACCGAAGGGCACCAGCATTTCCGCCACGAAGGCCGCGCCATCGGGCTGGTCAGcgcg                                                      >  2:734653/1‑134 (MQ=255)                                                                             gggCGAAGCCTATGCCTTCCCGCTGGGCCGCGTGCTGCGCGCGGCCTCGGTGGCGCGCAGCGAGATCGAGCAGACCGAAGGGCACCAGCATTTCCGCCACGAAGGCCGCGCCATCGGGCTGGTCAGCgcggcg                                                   >  2:76046/1‑133 (MQ=255)                                                                                 gAAGCCTATGCCTTCCCGCTGGGCCGCGTGCTGCGCGCGGCCTCGGTGGCGCGCAGCGAGATCGAGCAGACCGAAGGGCACCAGCATTTCCGCCACGAAGGCCGCGCCATCGGGCTGGTCAGCGCGGCGCAGGt                                              <  1:734653/134‑1 (MQ=255)                                                                                    gCCTATGCCTTCCCGCTGGGCCGCGTGCTGCGCGCGGCCTCGGTGGCGCGCAGCGAGATCGAGCAGACCGAAGGGCACCAGCATTTCCGCCACGAAGGCCGCGCCATCGGGCTGGTCAGCGCGGCGCAGGtgct                                           <  2:538698/134‑1 (MQ=255)                                                                                           ccTTCCCGCTGGGCCGCGTGCTGCGCGCGGCCTCGGTGGCGCGCAGCGAGATCGAGCAGACCGAAGGGCACCAGCATTTCCGCCACGAAGGCCGCGCCATCGGGCTGGTCAGCGCGGCGCAGGTGCTGCAACg                                     <  1:619390/133‑1 (MQ=255)                                                                                                tcgcgggcgaagcctatgccttcccgctgggccgcgCGCAGCGAGATCGAGCAGACCGAAggg                                                                                                      >  1:542887‑M2/37‑63 (MQ=255)                                                                                                tcgcgggcgaagcctatgccttcccgctgggccgcgCGCAGCGAGATCGAGCAGACCGAAggg                                                                                                      <  2:542887‑M2/27‑1 (MQ=255)                                                                                                               ctgcGCGCGGCCTCGGTGGCGCGCAGCGAGATCGAGCAGACCGAAGGGCACCAGCATTTCCGCCACGAAGGCCGCGCCATCGGGCTGGTc                                                            <  1:860453/90‑1 (MQ=255)                                                                                                               ctgcGCGCGGCCTCGGTGGCGCGCAGCGAGATCGAGCAGACCGAAGGGCACCAGCATTTCCGCCACGAAGGCCGCGCCATCGGGCTGGTc                                                            >  2:860453/1‑90 (MQ=255)                                                                                                               ctgcGCGCGGCCTCGGTGGCGCGCAGCGAGATCGAGCAGACCGAAGGGCACCAGCATTTCCGCCACGAAGGCCGCGCCATCGGGCTGGTCAGCGCGGCGCAGGTGCTGCAACGCCCCGAGGCTGACGCTGCCaa                >  2:667515/1‑134 (MQ=255)                                                                                                                   gcgcgGCCTCGGTGGCGCGCAGCGAGATCGAGCAGACCGAAGGGCACCAGCATTTCCGCCACGAAGGCcgc                                                                           <  2:203251/71‑1 (MQ=255)                                                                                                                   gcgcgGCCTCGGTGGCGCGCAGCGAGATCGAGCAGACCGAAGGGCACCAGCATTTCCGCCACGAAGGCcgc                                                                           >  1:203251/1‑71 (MQ=255)                                                                                                                      cgGCCTCGGTGGCGCGCAGCGAGATCGAGCAGACCGAAGGGCACCAGCATTTCCGCCACGAAGGCCGCGCCATCGGGCTGGTCAGCGCGGCGCAGGTGCTGCAACGCCCCGAGGCTGACGCTGCCAATGCGCAc         >  2:722521/1‑134 (MQ=255)                                                                                                                       ggCCTCGGTGGCGCGCAGCGAGATCGAGCAGACCGAAGGGCACCAGCATTTCCGCCACGAAGGCCGCGCCATCGGGCTGGTCAGCGCGGCGCAGGTGCTGCAACGCCCCGAGGCTGACGCTGCCAATGCGCAcg        <  1:667515/134‑1 (MQ=255)                                                                                                                            cGGTGGCGCGCAGCGAGATCGAGCAGACCGAAGGGCACCAGCATTTCCGCCACGAAGGCCGCGCCATCGGGCTGGTCAGcgcg                                                      <  2:192185/83‑1 (MQ=255)                                                                                                                            cGGTGGCGCGCAGCGAGATCGAGCAGACCGAAGGGCACCAGCATTTCCGCCACGAAGGCCGCGCCATCGGGCTGGTCAGcgcg                                                      >  1:192185/1‑83 (MQ=255)                                                                                                                             ggTGGCGCGCAGCGAGATCGAGCAGACCGAAGGGCACCAGCATTTCCGCCACGAAGGCCGCGCCATCGGGCTGGTCAGCGCGGCGCAGGTGCTGCAACGCCCCGAGGCTGACGCTGCCAATGCGCACGCGCAAg  >  2:41248/1‑134 (MQ=255)                                                                                                                                    |                                                                                                                               CGGGCCAGGGCCTGCACTTCCGGATGGAGTTGCCACTGACGCTGTCGGTGGTGCGCGCTCTGCTGGTGGAGGTCGCGGGCGAAGCCTATGCCTTCCCGCTGGGCCGCGTGCTGCGCGCGGCCTCGGTGGCGCGCAGCGAGATCGAGCAGACCGAAGGGCACCAGCATTTCCGCCACGAAGGCCGCGCCATCGGGCTGGTCAGCGCGGCGCAGGTGCTGCAACGCCCCGAGGCTGACGCTGCCAATGCGCACGCGCAAG  >  AM260480/2305069‑2305326

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.