New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	= 2305176	15 (0.550)	5 (0.190)	5/208	1.8	21.5%	coding (1465/2256 nt)	cheA2Y2	chemotaxis specific sensory transducer kinase,group IIIA, containing a receiver domain (hybrid)
	?	AM260480	2305200 =	22 (0.820)					coding (1489/2256 nt)	cheA2Y2	chemotaxis specific sensory transducer kinase,group IIIA, containing a receiver domain (hybrid)

CGCCTGACGCAGCAGCCGGGCCAGGGCCTGCACTTCCGGATGGAGTTGCCACTGACGCTGTCGGTGGTGCGCGCTCTGCTGGTGGAGGTCGCGGGCGAAGCCTATGCCTTCCCGCTGGGCCGCGTGCTGCGCGCGGCCTCGGTGGCGCGCAGCGAGATCGAGCAGACCGAAGGGCACCAGCATTTCCGCCACGAAGGCCGCGCCATCGGGCTGGTCAGCGCGGCGCAGGTGCTGCAACG  >  AM260480/2305053‑2305291                                                                                                                            |                                                                                                                    cgcCTGACGCAGCAGCCGGGCCAGGGCCTGCACTTCCGGATGGAGTTGCCACTGACGCTGTCGGTGGTGCGCGCTCTGCTGGTGGAGGTCGCGGGCGAAGCCTATGCCTTCCCGCTGGGCCGCGtgc                                                                                                                  >  1:364980/1‑127 (MQ=255) cgcCTGACGCAGCAGCCGGGCCAGGGCCTGCACTTCCGGATGGAGTTGCCACTGACGCTGTCGGTGGTGCGCGCTCTGCTGGTGGAGGTCGCGGGCGAAGCCTATGCCTTCCCGCTGGGCCGCGtgc                                                                                                                  <  2:364980/127‑1 (MQ=255)  gcCTGACGCAGCAGCCGGGCCAGGGCCTGCACTTCCGGATGGAGTTGCCACTGACGCTGTCGGTGGTGCGCGCTCTGCTGGTGGAGGTCGCGGGCGAAGCCTATGCCTTCCCGCTGGGCCGCGcgcagcgagat                                                                                                          <  1:75857‑M1/134‑12 (MQ=255)          cagcagCCGGGCCAGGGCCTGCACTTCCGGATGGAGTTGCCACTGACGCTGTCGGTGGTGCGCGCTCTGCTGGTGGAGGTCGCGGGCGAAGCCTATGCCTTCCCGCTGGGCCGCGTGCTGCGCGCGGCCTCGGt                                                                                                  >  2:366390/1‑134 (MQ=255)                 cGGGCCAGGGCCTGCACTTCCGGATGGAGTTGCCACTGACGCTGTCGGTGGTGCGCGCTCTGCTGGTGGAGGTCGCGGGCGAAGCCTATGCCTTCCCGCTGGGCCGCGTGCTGCGCGCGGCCTCGGTGgcgcgc                                                                                           <  2:474817/134‑1 (MQ=255)                                                gCCACTGACGCTGTCGGTGGTGCGCGCTCTGCTGGTGGAGGTCGCGGGCGAAGCCTATGCCTTCCCGCTGGGCCGCGcgcagcgagatcgag                                                                                                      <  2:562250‑M1/92‑16 (MQ=255)                                                gCCACTGACGCTGTCGGTGGTGCGCGCTCTGCTGGTGGAGGTCGCGGGCGAAGCCTATGCCTTCCCGCTGGGCCGCGcgcagcgagatcgag                                                                                                      >  1:562250‑M1/1‑77 (MQ=255)                                                          cTGTCGGTGGTGCGCGCTCTGCTGGTGGAGGTCGCGGGCGAAGCCTATGCCTTCCCGCTGGGCCGCGTGCTGCGCGCGGCCTCGGTGGCGCGCAGCGAGATCGAGCAGACCGAAGGGCACCAGCATTTCCGCCa                                                  >  1:723237/1‑134 (MQ=255)                                                                 tggtgCGCGCTCTGCTGGTGGAGGTCGCGGGCGAAGCCTATGCCTTCCCGCTGGGCCGCGTGCTGCGCGCGGCCTCGGTGGCGCGCAGCGAGATCGAGCAGACCGAAGGGCACCAGCATTTCCGCCACGAAGGc                                           >  1:753545/1‑134 (MQ=255)                                                                                     gAGGTCGCGGGCGAAGCCTATGCCTTCCCGCTGGGCCGCGTGCTGCGCGCGGCCTCGGTGGCGCGCAGCGAGATCGAGCAGACCGAAGGGCACCAGCATTTCCGCCACGAAGGCCGCGCCATCGGGCTGGTCa                        <  1:366390/133‑1 (MQ=255)                                                                                       ggTCGCGGGCGAAGCCTATGCCTTCCCGCTGGGCCGCGTGCTGCGCGCGGCCTCGGTGGCGCGCAGCGAGATCGAGc                                                                              >  2:457669/1‑77 (MQ=255)                                                                                       ggTCGCGGGCGAAGCCTATGCCTTCCCGCTGGGCCGCGTGCTGCGCGCGGCCTCGGTGGCGCGCAGCGAGATCGAGc                                                                              <  1:457669/77‑1 (MQ=255)                                                                                         tCGCGGGCGAAGCCTATGCCTTCCCGCTGGGCCGCGcgcagcgagatcgagcagaccgaaggg                                                                                          >  1:542887‑M1/1‑36 (MQ=255)                                                                                         tCGCGGGCGAAGCCTATGCCTTCCCGCTGGGCCGCGcgcagcgagatcgagcagaccgaaggg                                                                                          <  2:542887‑M1/63‑28 (MQ=255)                                                                                         tCGCGGGCGAAGCCTATGCCTTCCCGCTGGGCCGCGTGCTGCGCGCGGCCTCGGTGGCGCGCAGCGAGATCGAGCAGACCGAAGGGCACCAGCATTTCCGCCACGAAGGCCGCGCCATCGGGCTGGTCAGcgcg                   <  1:662431/134‑1 (MQ=255)                                                                                         tCGCGGGCGAAGCCTATGCCTTCCCGCTGGGCCGCGTGCTGCGCGCGGCCTCGGTGGCGCGCAGCGAGATCGAGCAGACCGAAGGGCACCAGCATTTCCGCCACGAAGGCCGCGCCATCGGGCTGGTCAGcgcg                   >  2:734653/1‑134 (MQ=255)                                                                                             gggCGAAGCCTATGCCTTCCCGCTGGGCCGCGTGCTGCGCGCGGCCTCGGTGGCGCGCAGCGAGATCGAGCAGACCGAAGGGCACCAGCATTTCCGCCACGAAGGCCGCGCCATCGGGCTGGTCAGCgcggcg                >  2:76046/1‑133 (MQ=255)                                                                                                 gAAGCCTATGCCTTCCCGCTGGGCCGCGTGCTGCGCGCGGCCTCGGTGGCGCGCAGCGAGATCGAGCAGACCGAAGGGCACCAGCATTTCCGCCACGAAGGCCGCGCCATCGGGCTGGTCAGCGCGGCGCAGGt           <  1:734653/134‑1 (MQ=255)                                                                                                    gCCTATGCCTTCCCGCTGGGCCGCGTGCTGCGCGCGGCCTCGGTGGCGCGCAGCGAGATCGAGCAGACCGAAGGGCACCAGCATTTCCGCCACGAAGGCCGCGCCATCGGGCTGGTCAGCGCGGCGCAGGtgct        <  2:538698/134‑1 (MQ=255)                                                                                                           ccTTCCCGCTGGGCCGCGTGCTGCGCGCGGCCTCGGTGGCGCGCAGCGAGATCGAGCAGACCGAAGGGCACCAGCATTTCCGCCACGAAGGCCGCGCCATCGGGCTGGTCAGCGCGGCGCAGGTGCTGCAACg  <  1:619390/133‑1 (MQ=255)                                                                                                                            |                                                                                                                    CGCCTGACGCAGCAGCCGGGCCAGGGCCTGCACTTCCGGATGGAGTTGCCACTGACGCTGTCGGTGGTGCGCGCTCTGCTGGTGGAGGTCGCGGGCGAAGCCTATGCCTTCCCGCTGGGCCGCGTGCTGCGCGCGGCCTCGGTGGCGCGCAGCGAGATCGAGCAGACCGAAGGGCACCAGCATTTCCGCCACGAAGGCCGCGCCATCGGGCTGGTCAGCGCGGCGCAGGTGCTGCAACG  >  AM260480/2305053‑2305291

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.