| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260480 | 2839984 = | 16 (0.580) | 4 (0.160) | 4/200 | 2.0 | 22.3% | coding (543/906 nt) | h16_B2512 | transcriptional regulator, LysR‑family |
| ? | AM260480 | 2840041 = | 13 (0.510) | coding (486/906 nt) | h16_B2512 | transcriptional regulator, LysR‑family | |||||
GCCCGACTACCTCGCACGCCATGCGCGCATCCGGCAGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260480/2840023‑2839984‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagccgCGGCGACACCGCGATGCGGCGCGCGACCACATTGGGCGGCAGCGAGGCGCCGAGGCGCACCGCGATGTCGAC > AM260480/2840041‑2840112 GCCCGACTACCTCGCACGCCATGCGCGCATCCGGCAGCCGCGGCGACACCGCGATGCGG < 1:257283/59‑1GCCCGACTACCTCGCACGCCATGCGCGCATCCGGCAGCCGCGGCGACACCGCGATGCGG > 2:257283/1‑59 GACTACCTCGCACGCCATGCGCGCATCCGGCAGCCGCGGCGACACCGCGATGCGGCGCGCGACCACATTGGGCGGCAGCGAGGCGCCGAGGCGCACCGCGATGTCGAC < 1:468613/108‑1 GACTACCTCGCACGCCATGCGCGCATCCGGCAGCCGCGGCGACACCGCGATGCGGCGCGCGACCACATTGGGCGGCAGCGAGGCGCCGAGGCGCACCGCGATGTCGAC > 2:468613/1‑108 GCCCGACTACCTCGCACGCCATGCGCGCATCCGGCAGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260480/2840023‑2839984‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagccgCGGCGACACCGCGATGCGGCGCGCGACCACATTGGGCGGCAGCGAGGCGCCGAGGCGCACCGCGATGTCGAC > AM260480/2840041‑2840112 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |