New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260480 2839984 =16 (0.580)4 (0.160) 4/200 2.0 22.3% coding (543/906 nt) h16_B2512 transcriptional regulator, LysR‑family
?AM260480 2840041 = 13 (0.510)coding (486/906 nt) h16_B2512 transcriptional regulator, LysR‑family

GCCCGTCGAGCACGATCTCGTCGCCGGCGGCCAGCCAGGTGAAGCGCAGGATCTGGTGCCGCGCCAGGTCGGCCGGCTGCCGGATGCGCGCATGGCGTGCGAGGTAGTCGGGCGAGGCTACCAGCAGCCGCGGCGACACCGCGATGCGGCGCGCGACCACATTGGGCGGCAGCGAGGCGCCGAGGCGCACCGCGATGTCGACGCCCTCCTCCACCAGGTCGACGAAGCGGTCGTC  >  AM260480/2839911‑2840145
                                                                                                                                  |                                                                                                        
gCCCGTCGAGCACGATCTCGTCGCCGGCGGCCAGCCAGGTGAAGCGCAGGATCTGGTGCCGCGCCAGGTCGGCCGGCTGCCGGATGCGCGCATGGCGTGCGAGGTAGTCGGGCGAGGCTACCAGCAGCCgcggc                                                                                                       >  2:661531/1‑134 (MQ=255)
   cGTCGAGCACGATCTCGTCGCCGGCGGCCAGCCAGGTGAAGCGCAGGATCTGGTGCCGCGCCAGGTCGGCCGGCTGCCGGATGCGCGCATGGCGTGCGAGGTAGTCGGGCGAGGCTACCAGCAGCCGCGGCGa                                                                                                     >  1:485364/1‑133 (MQ=255)
                   gtcgCCGGCGGCCAGCCAGGTGAAGCGCAGGATCTGGTGCCGCGCCAGGTCGGCCGGCTGCCGGATGCGCGCATGGCGTGCGAGGTAGTCGGGCGAGGCTACCAGCAGCCGCGGCGACACCGCGATgcgg                                                                                        <  1:661531/130‑1 (MQ=255)
                                    agGTGAAGCGCAGGATCTGGTGCCGCGCCAGGTCGGCCGGCTGCCGGATGCGCGCATGGCGTGCGAGGTAGTCGGGCGAGGCTACCAGCAGCCGCGGCGACACCGCGATGCGGCGCGCGACCACATTGggcggc                                                                   <  2:485364/134‑1 (MQ=255)
                                                 gATCTGGTGCCGCGCCAGGTCGGCCGGCTGCCGGATGCGCGCATGGCGTGCGAGGTAGTCGGGCGAGGCTACCAGCAGCCGCGGCGACACCGCGATGCGGCGCGCGACCACATTGGGCGGCAGcgaggcgccga                                                      <  2:874657/134‑1 (MQ=255)
                                                     tGGTGCCGCGCCAGGTCGGCCGGCTGCCGGATGCGCGCATGGCGTGCGAGGTAGTCGGGCGAGGCTACCAGCAGCCgcggc                                                                                                       <  2:219934/81‑1 (MQ=255)
                                                     tGGTGCCGCGCCAGGTCGGCCGGCTGCCGGATGCGCGCATGGCGTGCGAGGTAGTCGGGCGAGGCTACCAGCAGCCgcggc                                                                                                       >  1:219934/1‑81 (MQ=255)
                                                                                 ggATGCGCGCATGGCGTGCGAGGTAGTCGGGCGAGGCTACCAGCAGCCGCGGCGACACCGCGATGCGGCGCGCGACCACATTGGGCGGCAGCGAGGCGCCGAGGCGCACCGCGATGTCGACGCCCTCCTccacc                      <  2:752773/134‑1 (MQ=255)
                                                                                  gATGCGCGCATGGCGTGCGAGGTAGTCGGGCGAGGCTACCAGCAGCCGCGGCGACACCGCGATGCGGcgcgcg                                                                                  >  2:463717/1‑73 (MQ=255)
                                                                                  gATGCGCGCATGGCGTGCGAGGTAGTCGGGCGAGGCTACCAGCAGCCGCGGCGACACCGCGATGCGGcgcgcg                                                                                  <  1:463717/73‑1 (MQ=255)
                                                                                          gcccgactacctcgcacgccatgcgcgcatccggcagccgCGGCGACACCGCGATgcgg                                                                                        >  2:257283‑M2/41‑59 (MQ=255)
                                                                                          gcccgactacctcgcacgccatgcgcgcatccggcagccgCGGCGACACCGCGATgcgg                                                                                        <  1:257283‑M2/19‑1 (MQ=255)
                                                                                              gactacctcgcacgccatgcgcgcatccggcagccgCGGCGACACCGCGATGCGGCGCGCGACCACATTGGGCGGCAGCGAGGCGCCGAGGCGCACCGCGATGTCGAc                                   >  2:468613‑M2/37‑108 (MQ=255)
                                                                                              gactacctcgcacgccatgcgcgcatccggcagccgCGGCGACACCGCGATGCGGCGCGCGACCACATTGGGCGGCAGCGAGGCGCCGAGGCGCACCGCGATGTCGAc                                   <  1:468613‑M2/72‑1 (MQ=255)
                                                                                                     aGGTAGTCGGGCGAGGCTACCAGCAGCCGCGGCGACACCGCGATGCGGCGCGCGACCACATTGGGCGGCAGCGAGGCGCCGAGGCGCACCGCGATGTCGACGCCCTCCTCCACCAGGTCGACGAAGCGgtcgtc  >  2:105888/1‑134 (MQ=255)
                                                                                                                      tACCAGCAGCCGCGGCGACACCGCGATGCGGCGCGCGACCACATTGGGCGGCAGc                                                                >  1:585815/1‑55 (MQ=255)
                                                                                                                      tACCAGCAGCCGCGGCGACACCGCGATGCGGCGCGCGACCACATTGGGCGGCAGc                                                                <  2:585815/55‑1 (MQ=255)
                                                                                                                                  |                                                                                                        
GCCCGTCGAGCACGATCTCGTCGCCGGCGGCCAGCCAGGTGAAGCGCAGGATCTGGTGCCGCGCCAGGTCGGCCGGCTGCCGGATGCGCGCATGGCGTGCGAGGTAGTCGGGCGAGGCTACCAGCAGCCGCGGCGACACCGCGATGCGGCGCGCGACCACATTGGGCGGCAGCGAGGCGCCGAGGCGCACCGCGATGTCGACGCCCTCCTCCACCAGGTCGACGAAGCGGTCGTC  >  AM260480/2839911‑2840145

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.