| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260480 | 2839984 = | 16 (0.580) | 4 (0.160) | 4/200 | 2.0 | 22.3% | coding (543/906 nt) | h16_B2512 | transcriptional regulator, LysR‑family |
| ? | AM260480 | 2840041 = | 13 (0.510) | coding (486/906 nt) | h16_B2512 | transcriptional regulator, LysR‑family | |||||
GCCCGTCGAGCACGATCTCGTCGCCGGCGGCCAGCCAGGTGAAGCGCAGGATCTGGTGCCGCGCCAGGTCGGCCGGCTGCCGGATGCGCGCATGGCGTGCGAGGTAGTCGGGCGAGGCTACCAGCAGCCGCGGCGACACCGCGATGCGGCGCGCGACCACATTGGGCGGCAGCGAGGCGCCGAGGCGCACCGCGATGTCGACGCCCTCCTCCACCAGGTCGACGAAGCGGTCGTC > AM260480/2839911‑2840145 | gCCCGTCGAGCACGATCTCGTCGCCGGCGGCCAGCCAGGTGAAGCGCAGGATCTGGTGCCGCGCCAGGTCGGCCGGCTGCCGGATGCGCGCATGGCGTGCGAGGTAGTCGGGCGAGGCTACCAGCAGCCgcggc > 2:661531/1‑134 (MQ=255) cGTCGAGCACGATCTCGTCGCCGGCGGCCAGCCAGGTGAAGCGCAGGATCTGGTGCCGCGCCAGGTCGGCCGGCTGCCGGATGCGCGCATGGCGTGCGAGGTAGTCGGGCGAGGCTACCAGCAGCCGCGGCGa > 1:485364/1‑133 (MQ=255) gtcgCCGGCGGCCAGCCAGGTGAAGCGCAGGATCTGGTGCCGCGCCAGGTCGGCCGGCTGCCGGATGCGCGCATGGCGTGCGAGGTAGTCGGGCGAGGCTACCAGCAGCCGCGGCGACACCGCGATgcgg < 1:661531/130‑1 (MQ=255) agGTGAAGCGCAGGATCTGGTGCCGCGCCAGGTCGGCCGGCTGCCGGATGCGCGCATGGCGTGCGAGGTAGTCGGGCGAGGCTACCAGCAGCCGCGGCGACACCGCGATGCGGCGCGCGACCACATTGggcggc < 2:485364/134‑1 (MQ=255) gATCTGGTGCCGCGCCAGGTCGGCCGGCTGCCGGATGCGCGCATGGCGTGCGAGGTAGTCGGGCGAGGCTACCAGCAGCCGCGGCGACACCGCGATGCGGCGCGCGACCACATTGGGCGGCAGcgaggcgccga < 2:874657/134‑1 (MQ=255) tGGTGCCGCGCCAGGTCGGCCGGCTGCCGGATGCGCGCATGGCGTGCGAGGTAGTCGGGCGAGGCTACCAGCAGCCgcggc < 2:219934/81‑1 (MQ=255) tGGTGCCGCGCCAGGTCGGCCGGCTGCCGGATGCGCGCATGGCGTGCGAGGTAGTCGGGCGAGGCTACCAGCAGCCgcggc > 1:219934/1‑81 (MQ=255) ggATGCGCGCATGGCGTGCGAGGTAGTCGGGCGAGGCTACCAGCAGCCGCGGCGACACCGCGATGCGGCGCGCGACCACATTGGGCGGCAGCGAGGCGCCGAGGCGCACCGCGATGTCGACGCCCTCCTccacc < 2:752773/134‑1 (MQ=255) gATGCGCGCATGGCGTGCGAGGTAGTCGGGCGAGGCTACCAGCAGCCGCGGCGACACCGCGATGCGGcgcgcg > 2:463717/1‑73 (MQ=255) gATGCGCGCATGGCGTGCGAGGTAGTCGGGCGAGGCTACCAGCAGCCGCGGCGACACCGCGATGCGGcgcgcg < 1:463717/73‑1 (MQ=255) gcccgactacctcgcacgccatgcgcgcatccggcagccgCGGCGACACCGCGATgcgg > 2:257283‑M2/41‑59 (MQ=255) gcccgactacctcgcacgccatgcgcgcatccggcagccgCGGCGACACCGCGATgcgg < 1:257283‑M2/19‑1 (MQ=255) gactacctcgcacgccatgcgcgcatccggcagccgCGGCGACACCGCGATGCGGCGCGCGACCACATTGGGCGGCAGCGAGGCGCCGAGGCGCACCGCGATGTCGAc > 2:468613‑M2/37‑108 (MQ=255) gactacctcgcacgccatgcgcgcatccggcagccgCGGCGACACCGCGATGCGGCGCGCGACCACATTGGGCGGCAGCGAGGCGCCGAGGCGCACCGCGATGTCGAc < 1:468613‑M2/72‑1 (MQ=255) aGGTAGTCGGGCGAGGCTACCAGCAGCCGCGGCGACACCGCGATGCGGCGCGCGACCACATTGGGCGGCAGCGAGGCGCCGAGGCGCACCGCGATGTCGACGCCCTCCTCCACCAGGTCGACGAAGCGgtcgtc > 2:105888/1‑134 (MQ=255) tACCAGCAGCCGCGGCGACACCGCGATGCGGCGCGCGACCACATTGGGCGGCAGc > 1:585815/1‑55 (MQ=255) tACCAGCAGCCGCGGCGACACCGCGATGCGGCGCGCGACCACATTGGGCGGCAGc < 2:585815/55‑1 (MQ=255) | GCCCGTCGAGCACGATCTCGTCGCCGGCGGCCAGCCAGGTGAAGCGCAGGATCTGGTGCCGCGCCAGGTCGGCCGGCTGCCGGATGCGCGCATGGCGTGCGAGGTAGTCGGGCGAGGCTACCAGCAGCCGCGGCGACACCGCGATGCGGCGCGCGACCACATTGGGCGGCAGCGAGGCGCCGAGGCGCACCGCGATGTCGACGCCCTCCTCCACCAGGTCGACGAAGCGGTCGTC > AM260480/2839911‑2840145 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |