New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	2839984 =	16 (0.580)	4 (0.160)	4/200	2.0	22.3%	coding (543/906 nt)	h16_B2512	transcriptional regulator, LysR‑family
	?	AM260480	2840041 =	13 (0.510)					coding (486/906 nt)	h16_B2512	transcriptional regulator, LysR‑family

GCCAGCGAGTTGTTGACGCGGTAGCGGCAGGACGCGCTCACCGGCGCCTGCCCGCCGGGCCCGTCGAGCACGATCTCGTCGCCGGCGGCCAGCCAGGTGAAGCGCAGGATCTGGTGCCGCGCCAGGTCGGCCGGCTGCCGGATGCGCGCATGGCGTGCGAGGTAGTCGGGCGAGGCTACCAGCAGCCGCGGCGACACCGCGATGCGGCGCGCGACCACATTGGGCGGCAGCGAGGCGCCGA  >  AM260480/2839853‑2840093                                                                                                                                    |                                                                                                              gCCAGCGAGTTGTTGACGCGGTAGCGGCAGGACGCGCTCACCGGCGCCTGCCCGCCGGGCCCGTCGAGCACGATCTCGTCGCCGGCGGCCAGCCAGGTGAAGCGCAGGATCTGGTGCCGCGCCAGGTcggccgg                                                                                                             <  1:171692/134‑1 (MQ=255)              tgACGCGGTAGCGGCAGGACGCGCTCACCGGCGCCTGCCCGCCGGGCCCGTCGAGCACGATCTCGTCGCCGGCGGCCAGCCAGGTGAAGCGCAGGATCTGGTGCCGCGCCAGGTCGGCCGGCTGCCGGATgcgc                                                                                                >  1:734139/1‑134 (MQ=255)                aCGCGGTAGCGGCAGGACGCGCTCACCGGCGCCTGCCCGCCGGGCCCGTCGAGCACGATCTCGTCGCCGGCGGCCAGCCAGGTGAAGCGCAGGATCTGGTGCCGCGCCAGGTCGGCCGGCTGCCGGATgcgcg                                                                                               <  2:734139/133‑1 (MQ=255)                                  gcgcTCACCGGCGCCTGCCCGCCGGGCCCGTCGAGCACGATCTCGTCGCCGGCGGCCAGCCAGGTGAAGCGCAGGATCTGGTGCCGCGCCAGGTCGGCCGGCTGCCGGATGCGCGCATGGCGTGCGAGGTAGTc                                                                            <  2:132860/134‑1 (MQ=255)                                  gcgcTCACCGGCGCCTGCCCGCCGGGCCCGTCGAGCACGATCTCGTCGCCGGCGGCCAGCCAGGTGAAGCGCAGGATCTGGTGCCGCGCCAGGTCGGCCGGCTGCCGGATGCGCGCATGGCGTGCGAGGTAGTc                                                                            >  1:752773/1‑134 (MQ=255)                                                           gCCCGTCGAGCACGATCTCGTCGCCGGCGGCCAGCCAGGTGAAGCGCAGGATCTGGTGCCGCGCCAGGTCGGCCGGCTGCCGGATGCGCGCATGGCGTGCGAGGTAGTCGGGCGAGGCTACCAGCAGCCgcggc                                                   >  2:661531/1‑134 (MQ=255)                                                            gtcgacatcgcggtgcgcctcggcgcctcgctgccgcccaatgtggtcgcgcgccgcatcgcggtgtcgccgCGGCTGCCGGATGCGCGCATGGCGTGCGAGGTAGTc                                                                            <  1:468613‑M1/36‑1 (MQ=255)                                                            gtcgacatcgcggtgcgcctcggcgcctcgctgccgcccaatgtggtcgcgcgccgcatcgcggtgtcgccgCGGCTGCCGGATGCGCGCATGGCGTGCGAGGTAGTc                                                                            >  2:468613‑M1/73‑108 (MQ=255)                                                              cGTCGAGCACGATCTCGTCGCCGGCGGCCAGCCAGGTGAAGCGCAGGATCTGGTGCCGCGCCAGGTCGGCCGGCTGCCGGATGCGCGCATGGCGTGCGAGGTAGTCGGGCGAGGCTACCAGCAGCCGCGGCGa                                                 >  1:485364/1‑133 (MQ=255)                                                                    gCACGATCTCGTCGCCGGCGGCCAGCCAGGTGAAGCGCAGGATCTGGTGCCGCGCCAGGTCGGCCGGCTGCCGGATgcgc                                                                                                >  2:110469/1‑80 (MQ=255)                                                                    gCACGATCTCGTCGCCGGCGGCCAGCCAGGTGAAGCGCAGGATCTGGTGCCGCGCCAGGTCGGCCGGCTGCCGGATgcgc                                                                                                <  1:110469/80‑1 (MQ=255)                                                                              gtcgCCGGCGGCCAGCCAGGTGAAGCGCAGGATCTGGTGCCGCGCCAGGTCGGCCGGCTGCCGGATGCGCGCATGGCGTGCGAGGTAGTCGGGCGAGGCTACCAGCAGCCGCGGCGACACCGCGATgcgg                                    <  1:661531/130‑1 (MQ=255)                                                                                               agGTGAAGCGCAGGATCTGGTGCCGCGCCAGGTCGGCCGGCTGCCGGATGCGCGCATGGCGTGCGAGGTAGTCGGGCGAGGCTACCAGCAGCCGCGGCGACACCGCGATGCGGCGCGCGACCACATTGggcggc               <  2:485364/134‑1 (MQ=255)                                                                                                            gATCTGGTGCCGCGCCAGGTCGGCCGGCTGCCGGATGCGCGCATGGCGTGCGAGGTAGTCGGGCGAGGCTACCAGCAGCCGCGGCGACACCGCGATGCGGCGCGCGACCACATTGGGCGGCAGcgaggcgccga  <  2:874657/134‑1 (MQ=255)                                                                                                                tGGTGCCGCGCCAGGTCGGCCGGCTGCCGGATGCGCGCATGGCGTGCGAGGTAGTCGGGCGAGGCTACCAGCAGCCgcggc                                                   <  2:219934/81‑1 (MQ=255)                                                                                                                tGGTGCCGCGCCAGGTCGGCCGGCTGCCGGATGCGCGCATGGCGTGCGAGGTAGTCGGGCGAGGCTACCAGCAGCCgcggc                                                   >  1:219934/1‑81 (MQ=255)                                                                                                                 ccgcatcgcggtgtcgccgCGGCTGCCGGATGCGCGCATGGCGTGCGAGGTAGTCGGGc                                                                        >  2:257283‑M1/20‑59 (MQ=255)                                                                                                                 ccgcatcgcggtgtcgccgCGGCTGCCGGATGCGCGCATGGCGTGCGAGGTAGTCGGGc                                                                        <  1:257283‑M1/40‑1 (MQ=255)                                                                                                                          ccAGGTCGGCCGGCTGCCGGATGCGCGCATGGCGTGCGAGGTAGTCGGGCGAGGCTACCAGCAGcc                                                        <  1:617887/66‑1 (MQ=255)                                                                                                                          ccAGGTCGGCCGGCTGCCGGATGCGCGCATGGCGTGCGAGGTAGTCGGGCGAGGCTACCAGCAGcc                                                        >  2:617887/1‑66 (MQ=255)                                                                                                                                    |                                                                                                              GCCAGCGAGTTGTTGACGCGGTAGCGGCAGGACGCGCTCACCGGCGCCTGCCCGCCGGGCCCGTCGAGCACGATCTCGTCGCCGGCGGCCAGCCAGGTGAAGCGCAGGATCTGGTGCCGCGCCAGGTCGGCCGGCTGCCGGATGCGCGCATGGCGTGCGAGGTAGTCGGGCGAGGCTACCAGCAGCCGCGGCGACACCGCGATGCGGCGCGCGACCACATTGGGCGGCAGCGAGGCGCCGA  >  AM260480/2839853‑2840093

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.