New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	3446863 =	15 (0.580)	4 (0.170)	4/194	1.8	26.2%	intergenic (+14/+9)	h16_A3186/h16_A3187	aldehyde reductase, related to diketogulonate reductase/hypothetical membrane associated protein
	?	AM260479	3446884 =	9 (0.390)					coding (411/423 nt)	h16_A3187	hypothetical membrane associated protein

CCTGCTGGAGAACCTGGGCGCGCTGTCGCATACGCTGTCGGCCGCCCAGCTGGCCGAGCTCGACCGCATCTTCCCGCCGCCCGACGGCCCGGGCCCGCTGGAAATGCTTTGACCAGGCTGCCGCGCGCGTGCCCTCAGGGCACGCGGGCCACGTAGCGCTCGCGCTCGACGTAGCGCACCAGGTAGCTGCGCGCCTTCTCGCGGGTGTCGGTGGTCACGCGCGCCGCAGCCTGGCGCGCGCTGCTCTTGCCGT  >  AM260479/3446738‑3446990                                                                                                                              |                                                                                                                                ggcagatgtcgtcgtcgcacggcaagagcagcgcgcgccaggctgcggcgcgcgtgaccaccgacacccgcgagaaggcgcgcagctacctggtgcgctacgtcgagcgcgagcgctacgtggccCGCGTGccc                                                                                                                         <  1:158111‑M1/9‑1 (MQ=255)  gcagatgtcgtcgtcgcacggcaagagcagcgcgcgccaggctgcggcgcgcgtgaccaccgacacccgcgagaaggcgcgcagctacctggtgcgctacgtcgagcgcgagcgctacgtggccCGCGTGCCCt                                                                                                                        <  2:623344‑M1/10‑1 (MQ=255)      atgtcgtcgtcgcacggcaagagcagcgcgcgctaggctgcggcgcgcgtgaccaccgacacccgcgagaaggcgcgcagctacctggtgcgctacgtcgagcgcgagcgctacgtggccCGCGTg                                                                                                                            >  2:704199‑M1/121‑126 (MQ=255)      atgtcgtcgtcgcacggcaagagcagcgcgcgccaggctgcggcgcgcgtgaccaccgacacccgcgagaaggcgcgcagctacctggtgcgctacgtcgagcgcgagcgctacgtggccCGCGTg                                                                                                                            <  1:704199‑M1/6‑1 (MQ=255)        gagaACCTGGGCGCGCTGTCGCATACGCTGTCGGCCGCCCAGCTGGCCGAGCTCGACCGCATCTTCCCGCCGCCCGACGGCCCGGGCCCGCTGGAAATGCTTTGACCAGGCTGCCGCGCGCGTGCCCTCAGGGc                                                                                                                  <  2:404739/134‑1 (MQ=255)        gagaACCTGGGCGCGCTGTCGCATACGCTGTCGGCCGCCCAGCTGGCCGAGCTCGACCGCATCTTCCCGCCGCCCGACGGCCCGGGCCCGCTGGAAATGCTTTGACCAGGCTGCCGCGCGCGTGCCCTCAGGGc                                                                                                                  <  1:665747/134‑1 (MQ=255)                      gcTGTCGCATACGCTGTCGGCCGCCCAGCTGGCCGAGCTCGACCGCATCTTCCCGCCGCCCGACGGCCCGGGCCCGCTGGAAATGCTTTGACCAGGCTGCCGCGCGCGTGCCCTCAGGGCACGCGGGCCACg                                                                                                      >  1:861804/1‑132 (MQ=255)                                      tCGGCCGCCCAGCTGGCCGAGCTCGACCGCATCTTCCCGCCGCCCGACGGCCCGGGCCCGCTGGAAATGCTTTGACCAGGCTGCCGCGCGCGTGCCCTCAGGGCACGCGGGCCACGTAGCGCTCGCGCTCGAc                                                                                     <  2:861804/133‑1 (MQ=255)                                        ggCCGCCCAGCTGGCCGAGCTCGACCGCATCTTCCCGCCGCCCGACGGCCCGGGCCCGCTGGAAATGCTTTGACCAGGCTGCCGCGCGCGTGCCCTCAGGGc                                                                                                                  >  1:670446/1‑102 (MQ=255)                                        ggCCGCCCAGCTGGCCGAGCTCGACCGCATCTTCCCGCCGCCCGACGGCCCGGGCCCGCTGGAAATGCTTTGACCAGGCTGCCGCGCGCGTGCCCTCAGGGc                                                                                                                  <  2:670446/102‑1 (MQ=255)                                          ccgccCAGCTGGCCGAGCTCGACCGCATCTTCCCGCCGCCCGACGGCCCGGGCCCGCTGGAAATGCTTTGACCAGGCTGCcgcgc                                                                                                                                 >  2:518339/1‑85 (MQ=255)                                          ccgccCAGCTGGCCGAGCTCGACCGCATCTTCCCGCCGCCCGACGGCCCGGGCCCGCTGGAAATGCTTTGACCAGGCTGCcgcgc                                                                                                                                 <  1:518339/85‑1 (MQ=255)                                                    ggCCGAGCTCGACCGCATCTTCCCGCCGCCCGACGGCCCGGGCCCGCTGGAAATGCTTTGACCAGGCTGCCGCGCGCGTGCCCTCAGGGCACGCGGGCCACGTAGCGCTCGCGCTCGACGTAGCGCACCAgg                                                                        >  2:357754/1‑132 (MQ=255)                                                       tgaccaccgacacccgcgagaaggcgcgcagctacctggtgcgctacgtcgagcgcgagcgctacgtggccCGCGTg                                                                                                                            >  2:334949‑M1/72‑77 (MQ=255)                                                       tgaccaccgacacccgcgagaaggcgcgcagctacctggtgcgctacgtcgagcgcgagcgctacgtggccCGCGTg                                                                                                                            <  1:334949‑M1/6‑1 (MQ=255)                                                                                  cGACGGCCCGGGCCCGCTGGAAATGCTTTGACCAGGCTGCCGCGCGCGTGCCCTCAGGGCACGCGGGCCACGTAGCGCTCGCGCTCGAc                                                                                     >  2:3721/1‑89 (MQ=255)                                                                                  cGACGGCCCGGGCCCGCTGGAAATGCTTTGACCAGGCTGCCGCGCGCGTGCCCTCAGGGCACGCGGGCCACGTAGCGCTCGCGCTCGAc                                                                                     <  1:3721/89‑1 (MQ=255)                                                                                                cgCTGGAAATGCTTTGACCAGGCTGCCGCGCGCGTGCCCTCAGGGCACGCGGGCCACGTAGCGCTCGCGCTCGACGTAGCGCACCAGGTAGCTGCGCGCCTTCTCGCGGGTGTCGGTGGTCACGCGCGCCGCAg                          <  1:357754/134‑1 (MQ=255)                                                                                                      aaaTGCTTTGACCAGGCTGCCGCGCGCGTGCCCTCAGGGCACGCGGGCCACGTAg                                                                                                   >  1:795718/1‑55 (MQ=255)                                                                                                      aaaTGCTTTGACCAGGCTGCCGCGCGCGTGCCCTCAGGGCACGCGGGCCACGTAg                                                                                                   <  2:795718/55‑1 (MQ=255)                                                                                                           gcgcgagcgctacgtggccCGCGTGCCCTCAGGGCACGCGGGCCACGTAGCGCTCGCGCTCGACGTAGCGCACCAGGTAGCTGCGCGCCTtc                                                         >  1:716612‑M1/20‑92 (MQ=255)                                                                                                           gcgcgagcgctacgtggccCGCGTGCCCTCAGGGCACGCGGGCCACGTAGCGCTCGCGCTCGACGTAGCGCACCAGGTAGCTGCGCGCCTtc                                                         <  2:716612‑M1/73‑1 (MQ=255)                                                                                                            cgcgagcgctacgtggccCGCGTGCCCTCAGGGCACGCGGGCCACGTAGCGCTCGCGCTCGACGTAGCGCACCAGGTAGCTGCGCGCCtt                                                          >  1:133001‑M1/19‑90 (MQ=255)                                                                                                            cgcgagcgctacgtggccCGCGTGCCCTCAGGGCACGCGGGCCACGTAGCGCTCGCGCTCGACGTAGCGCACCAGGTAGCTGCGCGCCtt                                                          <  2:133001‑M1/72‑1 (MQ=255)                                                                                                                        gCCGCGCGCGTGCCCTCAGGGCACGCGGGCCACGTAGCGCTCGCGCTCGACGTAGCGCACCAGGTAGCTGCGCGCCTTCTCGCGGGTGTCGGTGGTCACGCGCGCCGCAGCCTGGCGCGCGCTGCTCTTGCCGt  >  1:623344/1‑134 (MQ=255)                                                                                                                              |                                                                                                                                CCTGCTGGAGAACCTGGGCGCGCTGTCGCATACGCTGTCGGCCGCCCAGCTGGCCGAGCTCGACCGCATCTTCCCGCCGCCCGACGGCCCGGGCCCGCTGGAAATGCTTTGACCAGGCTGCCGCGCGCGTGCCCTCAGGGCACGCGGGCCACGTAGCGCTCGCGCTCGACGTAGCGCACCAGGTAGCTGCGCGCCTTCTCGCGGGTGTCGGTGGTCACGCGCGCCGCAGCCTGGCGCGCGCTGCTCTTGCCGT  >  AM260479/3446738‑3446990

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.