New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260479 3446863 =15 (0.580)4 (0.170) 4/194 1.8 26.2% intergenic (+14/+9) h16_A3186/h16_A3187 aldehyde reductase, related to diketogulonate reductase/hypothetical membrane associated protein
?AM260479 3446884 = 9 (0.390)coding (411/423 nt) h16_A3187 hypothetical membrane associated protein

GCTGTCGCATACGCTGTCGGCCGCCCAGCTGGCCGAGCTCGACCGCATCTTCCCGCCGCCCGACGGCCCGGGCCCGCTGGAAATGCTTTGACCAGGCTGCCGCGCGCGTGCCCTCAGGGCACGCGGGCCACGTAGCGCTCGCGCTCGACGTAGCGCACCAGGTAGCTGCGCGCCTTCTCGCGGGTGTCGGTGGTCACGCGCGCCGCAGCCTGGCGCGCGCTGCTCTTGCCGTGCGACGACGACATCTGCCCATCCAGG  >  AM260479/3446759‑3447016
                                                                                                                             |                                                                                                                                    
gcTGTCGCATACGCTGTCGGCCGCCCAGCTGGCCGAGCTCGACCGCATCTTCCCGCCGCCCGACGGCCCGGGCCCGCTGGAAATGCTTTGACCAGGCTGCCGCGCGCGTGCCCTCAGGGCACGCGGGCCACg                                                                                                                                >  1:861804/1‑132 (MQ=255)
                tCGGCCGCCCAGCTGGCCGAGCTCGACCGCATCTTCCCGCCGCCCGACGGCCCGGGCCCGCTGGAAATGCTTTGACCAGGCTGCCGCGCGCGTGCCCTCAGGGCACGCGGGCCACGTAGCGCTCGCGCTCGAc                                                                                                               <  2:861804/133‑1 (MQ=255)
                              ggCCGAGCTCGACCGCATCTTCCCGCCGCCCGACGGCCCGGGCCCGCTGGAAATGCTTTGACCAGGCTGCCGCGCGCGTGCCCTCAGGGCACGCGGGCCACGTAGCGCTCGCGCTCGACGTAGCGCACCAgg                                                                                                  >  2:357754/1‑132 (MQ=255)
                                                    gaaggcgcgcagctacctggtgcgctacgtcgagcgcgagcgctacgtggcccgcgtgccctgagggcacgcgGGCCACGTAgcgctcgcgc                                                                                                                    >  1:716612‑M2/74‑92 (MQ=255)
                                                    gaaggcgcgcagctacctggtgcgctacgtcgagcgcgagcgctacgtggcccgcgtgccctgagggcacgcgGGCCACGTAgcgctcgcgc                                                                                                                    <  2:716612‑M2/19‑1 (MQ=255)
                                                     aaggcgcgcagctacctggtgcgctacgtcgagcgcgagcgctacgtggcccgcgtgccctgagggcacgcgGGCCACGTAgcgctcgcg                                                                                                                     >  1:133001‑M2/73‑90 (MQ=255)
                                                     aaggcgcgcagctacctggtgcgctacgtcgagcgcgagcgctacgtggcccgcgtgccctgagggcacgcgGGCCACGTAgcgctcgcg                                                                                                                     <  2:133001‑M2/18‑1 (MQ=255)
                                                            cGACGGCCCGGGCCCGCTGGAAATGCTTTGACCAGGCTGCCGCGCGCGTGCCCTCAGGGCACGCGGGCCACGTAGCGCTCGCGCTCGAc                                                                                                               >  2:3721/1‑89 (MQ=255)
                                                            cGACGGCCCGGGCCCGCTGGAAATGCTTTGACCAGGCTGCCGCGCGCGTGCCCTCAGGGCACGCGGGCCACGTAGCGCTCGCGCTCGAc                                                                                                               <  1:3721/89‑1 (MQ=255)
                                                                          cgCTGGAAATGCTTTGACCAGGCTGCCGCGCGCGTGCCCTCAGGGCACGCGGGCCACGTAGCGCTCGCGCTCGACGTAGCGCACCAGGTAGCTGCGCGCCTTCTCGCGGGTGTCGGTGGTCACGCGCGCCGCAg                                                    <  1:357754/134‑1 (MQ=255)
                                                                                aaaTGCTTTGACCAGGCTGCCGCGCGCGTGCCCTCAGGGCACGCGGGCCACGTAg                                                                                                                             >  1:795718/1‑55 (MQ=255)
                                                                                aaaTGCTTTGACCAGGCTGCCGCGCGCGTGCCCTCAGGGCACGCGGGCCACGTAg                                                                                                                             <  2:795718/55‑1 (MQ=255)
                                                                                     gcgcgagcgctacgtggccCGCGTGCCCTCAGGGCACGCGGGCCACGTAGCGCTCGCGCTCGACGTAGCGCACCAGGTAGCTGCGCGCCTtc                                                                                   >  1:716612‑M1/20‑92 (MQ=255)
                                                                                     gcgcgagcgctacgtggccCGCGTGCCCTCAGGGCACGCGGGCCACGTAGCGCTCGCGCTCGACGTAGCGCACCAGGTAGCTGCGCGCCTtc                                                                                   <  2:716612‑M1/73‑1 (MQ=255)
                                                                                      cgcgagcgctacgtggccCGCGTGCCCTCAGGGCACGCGGGCCACGTAGCGCTCGCGCTCGACGTAGCGCACCAGGTAGCTGCGCGCCtt                                                                                    >  1:133001‑M1/19‑90 (MQ=255)
                                                                                      cgcgagcgctacgtggccCGCGTGCCCTCAGGGCACGCGGGCCACGTAGCGCTCGCGCTCGACGTAGCGCACCAGGTAGCTGCGCGCCtt                                                                                    <  2:133001‑M1/72‑1 (MQ=255)
                                                                                                  gCCGCGCGCGTGCCCTCAGGGCACGCGGGCCACGTAGCGCTCGCGCTCGACGTAGCGCACCAGGTAGCTGCGCGCCTTCTCGCGGGTGTCGGTGGTCACGCGCGCCGCAGCCTGGCGCGCGCTGCTCTTGCCGt                            >  1:623344/1‑134 (MQ=255)
                                                                                                            TGCCCTCAGGGCACGCGGGCCACGTAGCGCTCGCGCTCGACGTAGCGCACCAGGTAGCTGCGCGCCTTCTCGCGGGTGTCGGTGGTCACGCGCGCCGCAGCCTGGCGCGCGCTGCTCTTGCCGTGcgacgacga                  <  1:396320‑M1/134‑1 (MQ=255)
                                                                                                            TGCCCTCAGGGCACGCGGGCCACGTAGCGCTCGCGCTCGACGTAGCGCACCAGGTAGCTGCGCGCCTTCTCGCGGGTGTCGGTGGTCACGCGCGCCGCAGCCTGGCGCGCGCTGCTCTTGCCGTGcgacgacga                  <  1:26566‑M1/134‑1 (MQ=255)
                                                                                                             GCCCTCAGGGCACGCGGGCCACGTAGCGCTCGCGCTCGACGTAGCGCACCAGGTAGCTGCGCGCCTTCTCGCGGGTGTCGGTGGTCACGCGCGCCGCAGCCTGGCGCGCGCTGCTCTTGCCGTGcgacgacga                  <  2:743044‑M1/133‑1 (MQ=255)
                                                                                                               CCTCAGGGCACGCGGGCCACGTAGCGCTCGCGCTCGACGTAGCGCACCAGGTAGCTGCGCGCCTTCTCGCGGGTGTCGGTGGTCACGCGCGCCGCAGCCTGGCGCGCGCTGCTCTTGCCGTGCGACGACGACAt               <  1:982917‑M1/134‑1 (MQ=255)
                                                                                                                   agggcacgcgGGCCACGTAGCGCTCGCGCTCGACGTAGCGCACCAGGTAGCTGCGCGCCTTCTCGCGGGTGTCGGTGGTCACGCGCGCCGCAGCCTGGCGCGCGCTGCTCTTGCCGTGCGACGACGACATCTGc           <  2:623344‑M2/124‑1 (MQ=255)
                                                                                                                    gggcacgcgGGCCACGTAGCGCTCGCGCTCGACGTAGCGCACCAGGTAGCTGCGCGCCTTCTCGCGGGTGTCGGTGGTCACGCGCGCCGCAGCCTGGCGCGCGCTGCTCTTGCCGTGCGACGACGACATCTGcc          <  1:158111‑M2/125‑1 (MQ=255)
                                                                                                                       cacgcgGGCCACGTAGCGCTCGCGCTCGACGTAGCGCACCAGGTAGCTGCGCGCCTTCTCGCGGGTGTCGGTGGTCa                                                                >  2:334949‑M2/7‑77 (MQ=255)
                                                                                                                       cacgcgGGCCACGTAGCGCTCGCGCTCGACGTAGCGCACCAGGTAGCTGCGCGCCTTCTCGCGGGTGTCGGTGGTCa                                                                <  1:334949‑M2/71‑1 (MQ=255)
                                                                                                                       cacgcgGGCCACGTAGCGCTCGCGCTCGACGTAGCGCACCAGGTAGCTGCGCGCCTTCTCGCGGGTGTCGGTGGTCACGCGCGCCGCAGCCTGGCGCGCGCTGCTCTTGCCGTGCGACGACGACAt               <  1:704199‑M2/120‑1 (MQ=255)
                                                                                                                       cacgcgGGCCACGTAGCGCTCGCGCTCGACGTAGCGCACCAGGTAGCTGCGCGCCTTCTCGCGGGTGTCGGTGGTCACGCGCGCCGCAGCCTAGCGCGCGCTGCTCTTGCCGTGCGACGACGACAt               >  2:704199‑M2/7‑126 (MQ=255)
                                                                                                                             ggCCACGTAGCGCTCGCGCTCGACGTAGCGCACCAGGTAGCTGCGCGCCTTCTCGCGGGTGTCGGTGGTCACGCGCGCCGCAGCCTGgc                                              <  2:1025043/89‑1 (MQ=255)
                                                                                                                             ggCCACGTAGCGCTCGCGCTCGACGTAGCGCACCAGGTAGCTGCGCGCCTTCTCGCGGGTGTCGGTGGTCACGCGCGCCGCAGCCTGgc                                              >  1:1025043/1‑89 (MQ=255)
                                                                                                                             ggCCACGTAGCGCTCGCGCTCGACGTAGCGCACCAGGTAGCTGCGCGCCTTCTCGCGGGTGTCGGTGGTCACGCGCGCCGCAGCCTGGCGCGCGCTGCTCTTGCCGTGCGACGACGACATCTGCCCATCCagg  >  1:626984/1‑133 (MQ=255)
                                                                                                                             |                                                                                                                                    
GCTGTCGCATACGCTGTCGGCCGCCCAGCTGGCCGAGCTCGACCGCATCTTCCCGCCGCCCGACGGCCCGGGCCCGCTGGAAATGCTTTGACCAGGCTGCCGCGCGCGTGCCCTCAGGGCACGCGGGCCACGTAGCGCTCGCGCTCGACGTAGCGCACCAGGTAGCTGCGCGCCTTCTCGCGGGTGTCGGTGGTCACGCGCGCCGCAGCCTGGCGCGCGCTGCTCTTGCCGTGCGACGACGACATCTGCCCATCCAGG  >  AM260479/3446759‑3447016

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.