New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	TrimmedAssembly_T66_contig_13	1 =	0 (0.000)	93 (0.490)	44/252	1.5	65.5%	intergenic (–/‑320)	–/rasttk_feature_annotation_tool=annotate_proteins_km er_v2	–/hypothetical protein
	?	TrimmedAssembly_T66_contig_17	66634 =	98 (0.610)					intergenic (+348/–)	rasttk_feature_annotation_tool=elepa@bvbrc/–	hypothetical protein/–

AATTGGTAAGATAGTTTCTGTTGTCGCAACGGCAACTATGACAAATTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  TrimmedAssembly_T66_contig_13/133‑1 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAATCAAATGTGTAGGGTCTCTTGATTTTGAATCAAGAGCAAAACATTTGCGAAGTCAATTCGCTAGCG  >  TrimmedAssembly_T66_contig_17/66634‑66738                                                                                                                                                                                                                                                 AATTGGTAAGATAGTTTCTGTTGTCGCAACGGCAACTATGACAAATTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACG                                                                                                          <  1:16167/134‑1        AAGATAGTTTCTGTTGTCGCAACGGCAACTATGACAAATTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGA                                                                                                  >  2:31073/1‑135        AAGATAGTTTCTGTTGTCGCAACGGCAACTATGACAAATTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGA                                                                                                  >  1:1454594/1‑135        AAGATAGTTTCTGTTGTCGCAACGGCAACTATGACAAATTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGGTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGA                                                                                                  >  1:677030/1‑135         AGATAGTTTCTGTTGTCGCAACGGCAACTATGACAAATTAATCAAGTTACTTCTT‑AATAAAAGTTGTTGACAAGATATTTATTATGATGTTTTGATGTTTAAGCTGTGTTATTCGTTTTACACACGGAATTAGATC                                                                                                <  1:217150/136‑1             AGTTTCTGTTGTCGCAACGGCAACTATGACAAATTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTG                                                                                            >  1:1138126/1‑136             AGTTTCTGTTGTCGCAACGGCAACTATGACAAATTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTG                                                                                            >  2:855096/1‑136             AGTTTCTGTTGTCGCAACGGCAACTATGACAAATTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTG                                                                                            >  1:2259218/1‑136             AGTTTCTGTTGTCGCAACGGCAACTATGACAAATTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTG                                                                                            >  2:529995/1‑136                TTCTGTTGTCGCAACGGCAACTATGACAAATTAATCACGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGA                                                                                           <  2:2243896/134‑1                TTCTGTTGTCGCAACGGCAACTATGACAAATTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGA                                                                                           <  1:1480487/134‑1                  CTGTTGTCGCAACGGCAACTATGACAAATTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAA                                                                                         >  2:2353051/1‑134                  CTGTTGTCGCAACGGCAACTATGACAAATTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAA                                                                                         >  1:2389836/1‑134                  CTGTTGTCGCAACGGCAACTATGACAAATTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAA                                                                                         >  1:661954/1‑134                    GTTGTCGCAACGGCAACTATGACAAATTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTG                                                                                     >  1:2393777/1‑136                      TGTCGCAACGGCAACTATGACAAATTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGA                                                                                    <  1:1377740/135‑1                        TCGCAACGGCAACTATGACAAATTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACA                                                                                 >  2:2010648/1‑136                        TCGCAACGGCAACTATGACAAATTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACA                                                                                 >  1:472953/1‑136                        TCGCAACGGCAACTATGACAAATTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACA                                                                                 >  2:1876661/1‑136                           CAACGGCAACTATGACAAATTAATCAAGTTACTTCTTAAAAAAAAGTTGTTGACAAGATATTGATAAATATGTTATGATTATAAAGATGTGTAAAGCGATTAACACACGTAATTAGATATTTGAAAACTGAACAAA                                                                               >  1:2195725/1‑136                           CAACGGCAACTATGACAAATTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAG                                                                              >  2:2015032/1‑136                             ACGGCAACTATGACAAATTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTT                                                                            >  1:1830644/1‑136                              CGGCAACTATGACAAATTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTT                                                                           <  2:2294180/136‑1                              CGGCAACTATGACAAATTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTT                                                                           <  2:2224179/136‑1                              CGGCAACTATGACAAATTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTT                                                                           <  1:1038023/136‑1                              CGGCAACTATGACAAATTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTT                                                                           <  2:1856445/136‑1                                   ACTATGACAAATTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACG                                                                      <  2:41498/136‑1                                   ACTATGACAAATTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACG                                                                      <  1:546122/136‑1                                     TATGACAAATTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACATGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAA                                                                    <  2:1275989/136‑1                                     TATGACAAATTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAA                                                                    <  1:866852/136‑1                                      ATGACAAATTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACTGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAAT                                                                   <  1:612084/136‑1                                      ATGACAAATTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAAT                                                                   <  1:1211605/136‑1                                      ATGACAAATTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAAT                                                                   <  2:2044896/136‑1                                      ATGACAAATTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAAT                                                                   <  2:2140708/136‑1                                      ATGACAAATTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAAT                                                                   <  2:2151202/136‑1                                      ATGACAAATTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAAT                                                                   <  1:855096/136‑1                                      ATGACAAATTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAAT                                                                   <  1:1108429/136‑1                                      ATGACAAATTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAAT                                                                   <  1:660932/136‑1                                      ATGACAAATTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAAT                                                                   <  1:537939/136‑1                                      ATGACAAATTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAAT                                                                   <  1:1532121/136‑1                                      ATGACAAATTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAAT                                                                   <  1:1581456/136‑1                                      ATGACAAATTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAAT                                                                   <  1:180167/136‑1                                      ATGACAAATTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAAT                                                                   <  1:2015032/136‑1                                      ATGACAAATTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAAT                                                                   <  2:1281248/136‑1                                        GACAAATTAATCAAGTTAATTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGAACTTTGAAAACTGAACAAAGTTTCGACGAATCA                                                                 <  2:266495/136‑1                                            atTTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAATCAAATG                                                             <  2:2297936/134‑1                                            AATTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAATCAAATG                                                             >  1:1425699/1‑136                                            AATTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAATCAAATG                                                             >  1:1645040/1‑136                                               TAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAATCAAATGTGT                                                          <  1:1111440/136‑1                                                AATCAAGTTACTTCTT‑AAAAAAGGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAATCAAATGTGTA                                                         >  2:620346/1‑136                                                 ATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAATCAAATGTGTAG                                                        >  2:1369181/1‑136                                                 ATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAATCAAATGTGTAG                                                        >  1:2258787/1‑136                                                 ATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATT                                                                                                     >  2:1853100/1‑91                                                 ATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATT                                                                                                     <  1:1853100/91‑1                                                    AAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAATCAAATGTGTAGGG                                                      >  2:2341103/1‑135                                                    AAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAATCAAATGTGTAGGG                                                      >  2:1420576/1‑135                                                          CTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAATCAAATGTGTAGGGTCTCTTG                                               >  2:84379/1‑136                                                           TTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAATCAAATGTGTAGGGTCTCTTGA                                              >  1:1097690/1‑136                                                            TCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAATCAAATGTGTAGGGTCTCTTGAT                                             <  2:799466/136‑1                                                            TCTT‑AAAAAAAGATGTTGCCAAGATATTGATTAAGATGTTATGATGATTAAGCAGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAATCAAATGTGTAGGGTCTCTTGAT                                             <  2:424642/136‑1                                                               T‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAATCAAATGTGTAGGGTCTCTTGTTTTT                                          >  1:829239/1‑136                                                                  AAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGACCAAAGTTTCGACGAATCAAATGTGTAGGGTCTCTTGATTTTGA                                        <  2:898297/136‑1                                                                  AAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAATCAAATGTGTAGGGTCTCTTGATTTTGA                                        <  1:31073/136‑1                                                                    AAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAATCAAATGTGTAGGGTCTCTTGATTTTGAA                                       >  2:1696984/1‑135                                                                    AAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAATCAAATGTGTAGGGTCTCTTGATTTTGAA                                       >  1:1996437/1‑135                                                                    AAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAATCAAATGTGTAGGGTCTCTTGATTTTGAA                                       >  2:1959919/1‑135                                                                     AAAGTTGTTGACAAGATATTGATTGAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAATCAAATGTGTAGGGTCTCTTGATTTTGAATC                                     >  1:1561138/1‑136                                                                       AGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAATCAAATGTGTAGGGTCTCTTGATTTTGAATCAA                                   <  1:1152486/136‑1                                                                                     TATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAATCAAATGTGTAGGGTCTCTTGATTTTGAATCAAGAGCAAAACATTT                      <  1:307043/135‑1                                                                                     TATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAATCAAATGTGTAGGGTCTCTTGATTTTGAATCAAGAGCAAAACATTT                      <  1:1748209/135‑1                                                                                      ATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAATCAAATGTGTAGGGTCTCTTGATTTTGAATCAAGAGCAAAACATTTGC                    <  2:622617/136‑1                                                                                        TGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAATCAAATGTGTAGGGTCTCTTGATTTTGAATCAAGAGCAAAACATTTGCGA                  <  1:1707778/136‑1                                                                                                ATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAATCAAATGTGTAGGGTCTCTTGATTTTGAATCAAGAGCAAAACATTTGCGAAGTCAAT           >  1:1608901/1‑135                                                                                                 TGTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAATCAAATGTGTAGGGTCTCTTGATTTTGAATCAAGAGCAAAACATTTGCGAAGTCAATTC         >  2:328530/1‑136                                                                                                  GTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAATCAAATGTGTAGGGTCTCTTGATTTTGAATCAAGAGCAAAACATTTGCGAAGTCAATTC         >  2:1618742/1‑135                                                                                                  GTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAATCAAATGTGTAGGGTCTCTTGATTTTGAATCAAGAGCAAAACATTTGCGAAGTCAATTC         >  2:820645/1‑135                                                                                                  GTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAATCAAATGTGTAGGGTCTCTTGATTTTGAATCAAGAGCAAAACATTTGCGAAGTCAATTC         >  2:2233078/1‑135                                                                                                  GTTATGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAATCAAATGTGTAGGGTCTCTTGATTTTGAATCAAGAGCAAAACATTTGCGAAGTCAATTC         >  2:1164206/1‑135                                                                                                      TGATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAATCAAATGTGTAGGGTCTCTTGATTTTGAATCAAGAGCAAAACATTTGCGAAGTCAATTCGCTA     >  1:1732527/1‑135                                                                                                       GATGATTAAGCTGTGTTAAGCGATTAACACACTGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAATCAAATGTGTAGGGTCTCTTGATTTTGAATCAAGAGCAAAACATTTGCGAAGTCAATTCGCTAGC   >  2:2027748/1‑136                                                                                                       GATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAATCAAATGTGTAGGGTCTCTTGATTTTGAATCAAGAGCAAAACATTTGCGAAGTCAATTCGCTAGC   >  1:1983430/1‑136                                                                                                       GATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAATCAAATGTGTAGGGTCTCTTGATTTTGAATCAAGAGCAAAACATTTGCGAAGTCAATTCGCTAGC   >  2:800997/1‑136                                                                                                       GATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAATCAAATGTGTAGGGTCTCTTGATTTTGAATCAAGAGCAAAACATTTGCGAAGTCAATTCGCTAGC   >  1:1456306/1‑136                                                                                                       GATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAATCAAATGTGTAGGGTCTCTTGATTTTGAATCAAGAGCAAAACATTTGCGAAGTCAATTCGCTAGC   >  1:880259/1‑136                                                                                                       GATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAATCAAATGTGTAGGGTCTCTTGATTTTGAATCAAGAGCAAAACATTTGCGAAGTCAATTCGCTAGC   >  1:2429313/1‑136                                                                                                        ATGATTAAGCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAATCAAATGTGTAGGGTCTCTTGATTTTGAATCAAGAGCAAAACATTTGCGAAGTCAATTCGCTAGCa  >  2:1625906/1‑135                                                                                                              AAGCTGTGTTAAGCGATTAACACACGGAATTAGAT                                                                                                 >  2:1574502/1‑35                                                                                                                GCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAATCAAATGTGTAGGGTCTCTTGA                                              >  2:1167027/1‑84                                                                                                                GCTGTGTTAAGCGATTAACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAATCAAATGTGTAGGGTCTCTTGA                                              <  1:1167027/84‑1                                                                                                                                 ACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAAT                                                                   <  1:1712528/46‑1                                                                                                                                 ACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAAT                                                                   >  1:1971564/1‑46                                                                                                                                 ACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAAT                                                                   <  2:1971564/46‑1                                                                                                                                 ACACACGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAAT                                                                   >  2:1712528/1‑46                                                                                                                                                                                                                                                 AATTGGTAAGATAGTTTCTGTTGTCGCAACGGCAACTATGACAAATTAATCAAGTTACTTCTT‑AAAAAAAGTTGTTGACAAGATATTGATTAAGATGTTATGATGATTAAGCTGTGTTAAGCGATTAACACAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  TrimmedAssembly_T66_contig_13/133‑1 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacGGAATTAGATCTTTGAAAACTGAACAAAGTTTCGACGAATCAAATGTGTAGGGTCTCTTGATTTTGAATCAAGAGCAAAACATTTGCGAAGTCAATTCGCTAGCG  >  TrimmedAssembly_T66_contig_17/66634‑66738

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.