| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | TrimmedAssembly_T66_contig_14 | = 91033 | 0 (0.000) | 271 (0.860) | 85/260 | 0.1 | 100% | intergenic (+263/–) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– | hypothetical protein/– |
| ? | TrimmedAssembly_T66_contig_35 | 1 = | 0 (0.000) | intergenic (–/‑99) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/Mobile element protein | |||||
Only 100 of 272 total aligned reads displayed.
CATAATGCAGCTAATAATCACTTTCATTCATAGACTCCCCCAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > TrimmedAssembly_T66_contig_14/90899‑91033 | cATAATGCAGCTAATAATCACTTTCATTCATAGACTCCCCCAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCg < 2:1014006/135‑1 (MQ=255) aTGCAGCTAATAATCACTTTCATTCATAGACTCCCCCAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcga < 2:1399202‑M1/136‑6 (MQ=255) gCAGCTAATAATCACTTTCATTCATAGACTCCCCCAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgact > 1:508674‑M1/1‑129 (MQ=255) aataatCACTTTCATTCATAGACTCCCCCAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaa > 2:929299‑M1/1‑123 (MQ=255) aataatCACTTTCATTCATAGACTCCCCCAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaa > 2:844902‑M1/1‑123 (MQ=255) aataatCACTTTCATTCATAGACTCCCCCAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaa < 2:753356‑M1/136‑14 (MQ=255) aataatCACTTTCATTCATAGACTCCCCCAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaa < 1:140929‑M1/136‑14 (MQ=255) aataatCACTTTCATACATAGACTCCCCCAAGTCTGAAGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaa < 2:2511354‑M1/136‑14 (MQ=255) ataatCACTTTCATTCATAGACTCCCCCAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaat > 1:697838‑M1/1‑122 (MQ=255) ataatCACTTTCATTCATAGACTCCCCCAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaat > 2:679848‑M1/1‑122 (MQ=255) tCACTTTCATTCATAGACTCCCCCAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaa < 1:242704‑M1/136‑19 (MQ=255) cACTTTCATTCATAGACTCCCCCAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacacttgaaa > 1:1810231‑M1/1‑117 (MQ=255) tcattcatAGACTCCCCCAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgca > 1:589488‑M1/1‑112 (MQ=255) tcattcatAGACTCCCCCAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgca > 1:791612‑M1/1‑112 (MQ=255) attcatAGACTCCCCCAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaaca < 1:2375546‑M1/136‑27 (MQ=255) catAGACTCCCCCAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaa > 2:2310780‑M1/1‑107 (MQ=255) atAGACTCCCCCAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaa > 2:2386231‑M1/1‑106 (MQ=255) tAGACTCCCCCAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaag < 2:1607752‑M1/136‑32 (MQ=255) aGACTCCCCCAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagt < 2:542054‑M1/136‑33 (MQ=255) cTCCCCCAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaa > 2:2165220‑M1/1‑101 (MQ=255) cTCCCCCAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaa > 1:1182154‑M1/1‑101 (MQ=255) cccccAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaa > 2:423742‑M1/1‑99 (MQ=255) cccAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaa > 1:207862‑M1/1‑97 (MQ=255) cccAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaa > 2:2118771‑M1/1‑97 (MQ=255) cAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaata > 2:1472066‑M1/1‑95 (MQ=255) cAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaata < 1:2472476‑M1/136‑42 (MQ=255) cAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaata > 1:668242‑M1/1‑95 (MQ=255) cAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaata > 2:1299626‑M1/1‑95 (MQ=255) cAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaata > 2:1164034‑M1/1‑95 (MQ=255) cAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaata > 2:1992676‑M1/1‑95 (MQ=255) cAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaata < 1:2051160‑M1/136‑42 (MQ=255) cAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaata > 1:2‑M1/1‑95 (MQ=255) cAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaata > 2:2552393‑M1/1‑95 (MQ=255) cTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaaccc < 1:2386231‑M1/136‑47 (MQ=255) cTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaaccc < 2:1732588‑M1/136‑47 (MQ=255) tgatgaATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaaccca > 2:335149‑M1/1‑89 (MQ=255) tgaATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccata < 1:439147‑M1/135‑50 (MQ=255) gaATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccatacc > 2:1062480‑M1/1‑85 (MQ=255) gaATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccatacc > 2:1968219‑M1/1‑85 (MQ=255) gaATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccatacc < 2:1720828‑M1/136‑52 (MQ=255) aaTGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccctaccg > 1:2348759‑M1/1‑84 (MQ=255) aaTGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaaccc < 2:1206602‑M1/130‑47 (MQ=255) aaTGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaaccc > 1:1206681‑M1/1‑84 (MQ=255) ggTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaa < 1:857604‑M1/116‑38 (MQ=255) atcaAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTTCCGggcgaatttacaattgaaatgcaacacaaagaaaaaaaataaacccataccgggaagaaaat > 2:1065956‑M1/1‑74 (MQ=255) atcaAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatat > 1:1780539‑M1/1‑74 (MQ=255) aaaGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtt > 1:1025453‑M1/1‑71 (MQ=255) cccccACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaac > 2:375004‑M1/1‑67 (MQ=255) cccccACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaac > 2:798493‑M1/1‑67 (MQ=255) ccccACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaa < 1:1974745‑M1/134‑69 (MQ=255) ccACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacga > 1:2563662‑M1/1‑64 (MQ=255) cTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaa > 2:105188‑M1/1‑61 (MQ=255) cTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaa > 2:564494‑M1/1‑61 (MQ=255) tGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatc < 2:282375‑M1/136‑79 (MQ=255) gTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaac < 2:581223‑M1/136‑83 (MQ=255) tttCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaaca > 2:2299619‑M1/1‑53 (MQ=255) cTACTCCTTGACCACTCCATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattc < 2:609167‑M1/136‑88 (MQ=255) cTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattc < 1:360406‑M1/136‑88 (MQ=255) tACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcg > 2:1308785‑M1/1‑48 (MQ=255) tACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcg > 1:1061929‑M1/1‑48 (MQ=255) tACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcg > 2:2488583‑M1/1‑48 (MQ=255) tACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaacaaatcaaacaattcg > 2:1655617‑M1/1‑48 (MQ=255) tACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaa < 1:225523‑M1/84‑37 (MQ=255) tCCTTGACCACTACCTCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgagg < 1:2164564‑M1/136‑92 (MQ=255) tCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgagg > 1:629147‑M1/1‑45 (MQ=255) tCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgagg < 1:1289225‑M1/136‑92 (MQ=255) tCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATCGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgagg < 1:1681697‑M1/136‑92 (MQ=255) gACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatcc > 1:1701801‑M1/1‑40 (MQ=255) gACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatcc > 1:808739‑M1/1‑40 (MQ=255) ccACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaacgtaaaaaaataaacccataccgggtagactatgtttaacgaccaactcaaacaattcgaggtatccgg < 1:2334253‑M1/136‑99 (MQ=255) ccACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccgg > 2:1790592‑M1/1‑38 (MQ=255) ccACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccgg < 1:1870222‑M1/136‑99 (MQ=255) ccACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccgg < 2:1239331‑M1/136‑99 (MQ=255) ccACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccgg < 2:731433‑M1/136‑99 (MQ=255) ccACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccgg > 2:886586‑M1/1‑38 (MQ=255) ccACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccgg < 1:2303337‑M1/136‑99 (MQ=255) ccACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccgg < 2:1851291‑M1/136‑99 (MQ=255) ccACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaa > 2:1883509‑M1/1‑38 (MQ=255) cACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaataaaacaattcgaggtaacaggt > 1:757331‑M1/1‑37 (MQ=255) cTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccggtat < 1:1359558‑M1/136‑102 (MQ=255) aCATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccggtatga > 1:983371‑M1/1‑33 (MQ=255) cATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccggtatga > 1:1900156‑M1/1‑32 (MQ=255) aTCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccggtatga > 2:1508990‑M1/1‑31 (MQ=255) tCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgagg < 1:1138239‑M1/121‑92 (MQ=255) cTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaattaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgatgtatccggtatgagctataa > 1:2135031‑M1/1‑26 (MQ=255) cTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccggtatgagctataa > 2:2398453‑M1/1‑26 (MQ=255) aTGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccggtatgagctataaaca > 2:532981‑M1/1‑23 (MQ=255) aTGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccggtatgagctataaaca > 2:825401‑M1/1‑23 (MQ=255) tgtgGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccggtatgagctataaaca < 2:2432539‑M1/135‑114 (MQ=255) tgtgGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccggtatgagctataaaca < 1:539509‑M1/135‑114 (MQ=255) gtggtgGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccggtatgagctataaacatc < 1:1849026‑M1/136‑116 (MQ=255) ggtggCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccggtatgagctataaacatctt > 2:1420754‑M1/1‑19 (MQ=255) tggCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccggtatgagctataaacatctt > 1:329463‑M1/1‑17 (MQ=255) gCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccggtatgagctataaacatcttacta > 2:764344‑M1/1‑15 (MQ=255) gCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaaaatgtttaacgaccaaatcaaacaattcgaggtatccggtatgagctataaacatcttacta > 1:1646284‑M1/1‑15 (MQ=255) ttttATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccggtatgagctataaacatcttactataaa < 2:329451‑M1/136‑126 (MQ=255) tttATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagtatatgtttaacgaccaaatcaaacaattcgaggtatccggtatgagctataaacatcttactataaaa > 2:222174‑M1/1‑10 (MQ=255) ttGCCGggcgaatttaccattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagtatatgtttaatgaccaaatcacacaattcgaggtatccggtatgagctataaacatcttactataaaagaac < 1:892426‑M1/136‑131 (MQ=255) ttGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccggtatgagctataaacatcttactataaaagaac < 1:1031288‑M1/136‑131 (MQ=255) cGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccggtatgagctataaacatcttactataaaagaacgtga > 2:2060841‑M1/1‑2 (MQ=255) | CATAATGCAGCTAATAATCACTTTCATTCATAGACTCCCCCAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > TrimmedAssembly_T66_contig_14/90899‑91033 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |