| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | TrimmedAssembly_T66_contig_27 | = 3273 | 0 (0.000) | 260 (0.650) | 75/262 | 0.0 | 100% | intergenic (‑110/–) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– | Adenine specific DNA methylase Mod/– |
| ? | TrimmedAssembly_T66_contig_41 | 1 = | 0 (0.000) | intergenic (–/‑2) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/Mobile element protein | |||||
Only 100 of 260 total aligned reads displayed.
TTAAAAAGCCCAAAGCAATCACTTACAATGGTAGTAGCTAATTCCAACCAATATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > TrimmedAssembly_T66_contig_27/3142‑3273‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTCAGCAAGATGCAGATCGCAAAAGGCGGAATTGCGG > TrimmedAssembly_T66_contig_41/1‑133 AAAGCCCAAAGCAATCACTTACAATGGTAGTAGCTAATTCCAACCAATATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCT < 2:480815/136‑1 AAAGCCCAAAGCAATCACTTACAATGGTAGTAGCTAATTCCAACCAATATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCT < 1:641355/136‑1 AAGCCCACAGCAATCACATACAATGGGAGTAGCTAATTCCAACCACTATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCACTGAGGGGAATAAATCTT < 2:2172467/136‑1 AAGCCCAAAGCAATCACTTACAATGGTAGTAGCTAATTCCAACCAATATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTT > 2:957932/1‑136 AAAGCAATCACTTACAATGGTAGTAGCTAATTCCAACCAATATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAG < 2:2459321/136‑1 AAAGCAATCACTTACAATGGTAGTAGCTAATTCCAACCAATATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAG < 1:992434/136‑1 AATCACTTACAATGGTAGTAGCTAATTCCAACCAATATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATG < 1:245375/136‑1 AATCACTTACAATGGTAGTAGCTAATTCCAACCAATATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATG < 1:205710/136‑1 TCACTTACAATGGTAGTAGCTAATTCCAACCAATATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGC < 1:33442/136‑1 TCACTTACAATGGTAGTAGCTAATTCCAACCAATATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGC < 2:462159/136‑1 TCACTTACAATGGTAGTAGCTAATTCCAACCAATATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGC < 1:873449/136‑1 TCACTTACAATGGTAGTAGCTAATTCCAACCAATATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAACAAATCTTACCAAGTAATGGC < 1:1973467/136‑1 TCACTTACAATGGTAGTAGCTAATGCCAACCAAGATAGGGAGTGATTACTTTGGGTACATCTACTTTCTCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGC < 2:1520384/136‑1 CTTACAATGGTAGTAGCTAATTCCAACCAATATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTG > 1:280057/1‑135 GTAGCTAATTCCAACCAATATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCG > 1:1727082/1‑135 GTAGCTAATTCCAACCAATATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATG < 1:1026722/119‑1 GTAGCTAATTCCAACCAATATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATG > 2:1026902/1‑119 AGCTAATTCCAACCAATATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTC > 2:583187/1‑135 AGCTAATTCCAACCAATAGAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTC > 2:1992619/1‑135 AATTCCAACCAATATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTCGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAA > 2:518083/1‑136 AATTCCAACCAATATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAA > 2:1875636/1‑136 AATTCCAACCAATATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAA > 2:2375524/1‑136 CCAACCAATATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCT > 2:1302592/1‑136 CCAACCAATATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCT > 2:1379033/1‑136 CCAACCAATATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCT > 1:842142/1‑136 CCAACCAATATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCT > 1:692757/1‑136 CCAACCAATATAGGGAGTGATTACTTTGGGTACATCTACTATATCACGTTATCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCT > 1:1898823/1‑136 CAACCAATATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCT > 2:1736135/1‑135 AACCAATCTAGGGAGTGATTACTTTGGGTACATCTACTGTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAAGAAATCGTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTAC < 2:989033/136‑1 AACCAATATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTAC < 2:259180/136‑1 AATATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATT > 2:753261/1‑136 AATATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATT > 1:717455/1‑136 AATATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCT > 1:2290073/1‑91 ATATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTA < 1:447585/136‑1 ATATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTA < 1:2334738/136‑1 ATATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTA < 1:1308950/136‑1 GTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGT > 2:1112123/1‑136 GATTACTTTGTGTACATATACTTTATCACGATTTCAACGTGGCGCACTATCACAACTGTTCAATGAGTGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTG < 2:1423766/136‑1 GATTACTTTGGGTACATCTACTTTATCCCGTTTTCAACGTGGCGCACTCGCACAACTGGTCAATGAGGGGAAGAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTG < 2:1081810/136‑1 GATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTG < 1:1298227/136‑1 GATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTG < 1:1920133/136‑1 GATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTG > 1:1433696/1‑136 GATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTG > 1:270651/1‑136 GATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTG < 1:1161560/136‑1 GATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTG > 1:1125876/1‑136 GATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTG < 2:616503/136‑1 GATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTG > 1:1010454/1‑136 GATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTT < 1:963030/135‑1 GATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTT < 1:940698/135‑1 GATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTT < 2:2091435/135‑1 GATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTT < 2:1639629/135‑1 TACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGA > 1:813390/1‑135 ACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACC > 1:1351702/1‑136 ACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACC > 2:212603/1‑136 ACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACC > 1:1413703/1‑136 GGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTA > 2:161562/1‑136 TACATCTACGTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATCAGGGGAATAAATCTTACAAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTAAGATTAGCTATGAGATGGACCTGGTTAA > 2:345554/1‑135 ACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAAC < 2:1662544/136‑1 CATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACC < 2:685046/136‑1 CATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACC < 1:2141070/136‑1 ATCGACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCT < 1:1033404/136‑1 TACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTCCGATTAGCTATGAGTTGGACCGGGTTAAACCTTAT > 2:2029321/1‑136 TACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTAT > 2:1263173/1‑136 TACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTAT < 1:925696/136‑1 TACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTA < 1:2463833/107‑1 TACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTA > 2:2463833/1‑107 ACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATG < 2:39849/136‑1 ACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATG < 1:502775/136‑1 aTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGA < 2:525501/135‑1 CTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGA < 2:868631/136‑1 TATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTCATGGCTGACGCCTTAGGCGTCGCCACAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCa > 2:2294447/1‑135 TATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCC > 2:1537225/1‑136 TATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTG > 1:519813/1‑113 TATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTT > 1:2415926/1‑112 TATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTT < 2:2415926/112‑1 TATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTAAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCC > 2:1909955/1‑136 TCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAG < 1:300701/136‑1 ACGTTTTCAACGTGGCGCACTCGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAA > 2:2283167/1‑136 CGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGG < 1:648663/114‑1 CGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGC > 1:1802360/1‑65 CGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGC < 2:1802360/65‑1 TTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTA < 1:1671198/135‑1 TTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTA < 2:2353926/135‑1 TTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTGACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTA < 2:2242975/135‑1 AACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTCA < 2:837575/136‑1 GTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTCAGCA < 1:1146079/136‑1 GCACTAGCACAACAGGTCAATGAGGGGAAAAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTCAGCAAGATG < 1:1568428/136‑1 GCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATG < 2:1972363/42‑1 ACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTCAGCAAGATGCAGATCGC < 1:161562/136‑1 GTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTCAGCAAGATGCAGATCGCAAAAGGC > 2:499934/1‑136 CAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTCAGCAAGATGCAGATCGCAAAAGGCGG > 2:416794/1‑136 AATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTCAGCAAGATGCAGATCGCAAAAGGCGGA > 2:1223288/1‑136 AATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTCAGCAAGATGCAGATCGCAAA > 2:1693696/1‑129 ATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTCAGCAAGATGCAGATCGCAAAAGGCGGAA > 1:2079105/1‑136 ATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTCAGCAAGATGCAGATCGCAAAAGGCGGAA > 1:780920/1‑136 ATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTCAGCAAGATGCAGATCGCAAAAGGCGGAA > 2:1935744/1‑136 ATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCT < 1:1060315/107‑1 GAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTCAGCAAGATGCAGATCGCAAAAGGCGGAATT > 1:2210595/1‑136 GGGGAATAAATCTTACCAAGTAATGGCTGACGCCTT > 2:2510037/1‑36 GGGGAATAAATCTTACCAAGTAATGGCTGACGCCTT < 1:2510037/36‑1 TTAAAAAGCCCAAAGCAATCACTTACAATGGTAGTAGCTAATTCCAACCAATATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > TrimmedAssembly_T66_contig_27/3142‑3273‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTCAGCAAGATGCAGATCGCAAAAGGCGGAATTGCGG > TrimmedAssembly_T66_contig_41/1‑133 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |