| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | TrimmedAssembly_T66_contig_28 | = 3183 | 0 (0.000) | 298 (0.390) +TGAGAGTTAAATCTCTCAAAACTAAACAAAGTTTCGACGCG |
68/178 | 1.3 | 100% | intergenic (‑135/–) | rasttk_feature_creation_tool=RNA_reps_LSU_rRNA/– | LSU rRNA ## 23S rRNA, large subunit ribosomal RNA/– |
| ? | TrimmedAssembly_T66_contig_32 | = 1640 | 0 (0.000) | intergenic (+24/–) | rasttk_feature_creation_tool=RNA_reps_SSU_rRNA/– | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/– | |||||
Only 100 of 493 total aligned reads displayed.
CATTTACCTAACGGTAAATGCGATTAATGAGTTTAGCGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > TrimmedAssembly_T66_contig_28/3048‑3183 | cATTTACCTAACGGTAAATGCGATTAATGAGTTTAGCGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGttt < 2:208667/136‑1 (MQ=255) tACCTAATGGTAAATGCGATTAATGAGTTTAGCGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgag > 2:680143‑M1/1‑132 (MQ=255) tACCTAACGGTAAATGCGATTAATGAGTTTAGCGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGtttcaat > 1:2528888/1‑132 (MQ=255) aCCTAATGGTAAATGCGATTAATGAGTTTAGCGATAATTAAACTTCAATAAAAAACTCAAAAACCGCGGGGTTCTCGGTTTCATGATGAAAAAATATATTTGATATTAGCTCGTTTTCAATGAACAAGTGTtgaga > 1:942439‑M1/1‑131 (MQ=255) aCCTAACGGTAAATGCGATTAATGAGTTTAGCGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGtttcaatg > 1:2743665/1‑131 (MQ=255) aCCTAACGGTAAATGCGATTAATGAGTTTAGCGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGtttcaatg > 1:114838/1‑131 (MQ=255) aCCTAACGGTAAATGCGATTAATGAGTTTAGCGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgaga > 2:1785865‑M1/1‑131 (MQ=255) ccTAACGGTAAATGCGATTAATGAGTTTAGCGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagag > 2:1686001‑M1/1‑130 (MQ=255) tAACGGTAAATGCGATTAATGAGTTTAGCGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagtt < 2:1373512‑M1/136‑9 (MQ=255) tAAATGCGATTAATGAGTTTAGCGATAATTCCACTTCAAAAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTACAAAGAACAAGTTTtgagagttaaatc < 1:975141‑M1/135‑14 (MQ=255) tAAATGCGATTAATGAGTTTAGCGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatc > 1:754135‑M1/1‑122 (MQ=255) aTGCGATTAATGAGTTTAGCGATAATTAAACTTCAATAAAAAACTCAAACCACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctc < 2:2293395‑M1/136‑18 (MQ=255) tGCGATTAATGAGTTTAGCGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctca < 1:876927‑M1/136‑19 (MQ=255) gCGATTAATGAGTTTAGCGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaa > 1:738911‑M1/1‑117 (MQ=255) aaagagtTTAGCGATAATTAAACTTCAATAAAAAACTCAAAAAACCCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGAAAGTATCAAGATTTCAAAGAACAAGTTTtgagagttaaatatctcaataataa > 1:1215458‑M1/4‑111 (MQ=255) aaTGAGTTTAGCGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaa > 2:1444745‑M1/1‑111 (MQ=255) aaTGAGTTTAGCGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaa > 1:1996939‑M1/1‑111 (MQ=255) tAGCGATAATTAAAATTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATACTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtt < 2:2687612‑M1/136‑34 (MQ=255) aGCGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaatgtt > 1:2374285‑M1/1‑102 (MQ=255) aGCGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtt > 2:976841‑M1/1‑102 (MQ=255) cGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcg > 1:2043905‑M1/1‑100 (MQ=255) gaaaattaAACTTCAATAAAAAACTCAAAAAACGAGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttc < 1:2200023‑M1/131‑36 (MQ=255) gATAATTAAACTTCAATAAAAAACTCAAAACACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttc < 2:795036‑M1/134‑36 (MQ=255) gATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcga < 1:1388336‑M1/136‑38 (MQ=255) gATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcga < 1:1842756‑M1/136‑38 (MQ=255) gATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttc < 2:917244‑M1/134‑36 (MQ=255) gATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttc < 2:157141‑M1/134‑36 (MQ=255) gATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttc < 2:1544057‑M1/134‑36 (MQ=255) gATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttc < 1:1000632‑M1/134‑36 (MQ=255) gATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttc < 2:2354515‑M1/134‑36 (MQ=255) gATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttc < 1:2631703‑M1/134‑36 (MQ=255) gATAATTAAACTTCAATAAAAAACACAAAACACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTATTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcga < 1:1559516‑M1/136‑38 (MQ=255) aaaCTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAATAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgt > 1:1498839‑M1/1‑92 (MQ=255) aaaCTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgt > 1:1426425‑M1/1‑92 (MQ=255) aaaCTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgt > 1:2146425‑M1/1‑92 (MQ=255) aaaCTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgt > 1:1267350‑M1/1‑92 (MQ=255) aaaCTTCAAGAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAATGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgt > 1:857589‑M1/1‑92 (MQ=255) aaCTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtg < 2:1214386‑M1/136‑46 (MQ=255) aaCTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtg < 1:2609198‑M1/136‑46 (MQ=255) cTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgta < 2:1917592‑M1/136‑48 (MQ=255) cTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgta < 2:549133‑M1/136‑48 (MQ=255) tCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtagg < 2:1884004‑M1/136‑50 (MQ=255) tCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtagg < 1:686059‑M1/136‑50 (MQ=255) aTAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggttt < 1:306694‑M1/136‑53 (MQ=255) tAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggttt > 1:531600‑M1/1‑83 (MQ=255) tAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggttt > 1:2450174‑M1/1‑83 (MQ=255) aaaCTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgta < 2:1811881‑M1/136‑58 (MQ=255) cAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatatt < 1:1314866‑M1/136‑63 (MQ=255) cAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatatt < 1:2682682‑M1/136‑63 (MQ=255) aaaaaaCGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatatt > 1:614841‑M1/1‑73 (MQ=255) cacGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattcctta < 2:28079‑M1/135‑68 (MQ=255) aaCGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattcctta < 1:1118983‑M1/136‑68 (MQ=255) aaCGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattcctta < 2:2783695‑M1/136‑68 (MQ=255) tgtTCTCTGTTTCATTTTGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacatagtttcgacgcgtgtgtaggtttccgtaatattccttagaaagg < 2:489232‑M1/135‑74 (MQ=255) gtTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaagga < 1:1927347‑M1/135‑75 (MQ=255) ttCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccag < 1:1061961‑M1/136‑85 (MQ=255) ttATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgc < 2:2262488‑M1/136‑89 (MQ=255) ttATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgc < 2:614841‑M1/136‑89 (MQ=255) tATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgca > 2:292149‑M1/1‑47 (MQ=255) tATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgca < 2:2729014‑M1/136‑90 (MQ=255) tATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgca > 1:162122‑M1/1‑47 (MQ=255) tATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgca > 2:727477‑M1/1‑47 (MQ=255) tATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgca > 2:371688‑M1/1‑47 (MQ=255) tATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgca > 1:1662539‑M1/1‑47 (MQ=255) tATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgca > 1:1721521‑M1/1‑47 (MQ=255) tATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgca > 1:2489017‑M1/1‑47 (MQ=255) tATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgca > 1:365389‑M1/1‑47 (MQ=255) tATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgca > 1:1777764‑M1/1‑47 (MQ=255) tATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgggtaggtttccgtaatattccgtagaaaggaggtgatccagccgca > 2:1028342‑M1/1‑47 (MQ=255) tATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcga < 2:408540‑M1/84‑38 (MQ=255) tATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcga > 1:408540‑M1/1‑47 (MQ=255) tATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcga > 2:1318130‑M1/1‑47 (MQ=255) aaaaaTATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgcaggttc < 1:2835‑M1/136‑95 (MQ=255) aaaTATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgcaggttctc < 2:754135‑M1/136‑97 (MQ=255) tatatTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaacgtttcgacgcgtgtgtaggtttccgtaatattcctgagaaaggaggtgatccagccgcaggttctccta < 2:2167179‑M1/136‑100 (MQ=255) tatatTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgcaggttctccta < 2:1996428‑M1/136‑100 (MQ=255) tttGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgcaggttctcctacggc < 1:82574‑M1/136‑104 (MQ=255) atCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgcaggttctcctacggctaccttgtt > 2:2233879‑M1/1‑24 (MQ=255) tAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgcaggttctcctacggctaccttgttacg < 2:1655697‑M1/136‑116 (MQ=255) aGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgcaggttctcctacggctaccttgttacga < 1:2262313‑M1/136‑117 (MQ=255) aGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagattcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgcaggttctcctacggctaccttgttacga < 2:2602113‑M1/136‑117 (MQ=255) tttCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgcaggttctcctacggctaccttgttacgact < 1:2235151‑M1/135‑119 (MQ=255) tgtcaAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgcaggttctcctacggctaccttgttacgact < 1:2167308‑M1/133‑119 (MQ=255) tCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgcaggttctcctacggctaccttgttacgacttc > 2:1160549‑M1/1‑15 (MQ=255) tCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgcaggttctcctacggctaccttg > 2:1251695‑M1/1‑15 (MQ=255) aaaGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtagttttccgtaatattccttagaaaggaggtgatccagccgcaggttctcctacggctacctttttacgacttcac > 2:659125‑M1/1‑13 (MQ=255) aaaGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgcaggttctcctacggctaccttgttacgacttcacc < 2:264463‑M1/136‑124 (MQ=255) aaaGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgcaggttctcctacggctaccttgttacgacttcac > 1:1020400‑M1/1‑13 (MQ=255) gAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgcaggttctcctacggctaccttgttacgacttcacccta > 1:2123260‑M1/1‑10 (MQ=255) aCAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgcaggttctcctacggctaccttgttacgacttcaccctaat < 2:434130‑M1/136‑129 (MQ=255) aCAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgcaggttctcctacggctaccttgttacgacttcaccctaat < 1:1172802‑M1/136‑129 (MQ=255) aCAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgcaggttctcctacggctaccttgttacgacttcaccctaat < 2:1079118‑M1/136‑129 (MQ=255) aCAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattcctgagaaaggaggtgatccagccgcaggttctcctacggctaccttgttacgacttcaccctaat < 2:2489445‑M1/136‑129 (MQ=255) aCAAGTTTtgagagttaaatcacacaaaactaaacaaagcttcgacgcgtgtgtaggtttccgtaatattccatagaaaggaggtgatccagccgcaggttctcctacggctaccttgttacgacttcaccctaat < 1:2313066‑M1/136‑129 (MQ=255) tttgagagttaaatctctcaaaactaaaccaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgcaggttctcctacggctaccttgttacgacttcaccctaatcatct < 2:2139092‑M1/135‑134 (MQ=255) tttgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgcaggttctcctacggctaccttgttacgacttccccctaatcatc < 1:452195‑M1/134‑133 (MQ=255) tttgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgcaggttctcctacggctaccttgttacgacttcaccctaatcatct < 2:2060049‑M1/135‑134 (MQ=255) tttgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgcaggttctcctacggctaccttgttacgacttcaccctaatcatct < 2:1490602‑M1/135‑134 (MQ=255) tttgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgcaggttctcctacggctaccttgttacgacttcaccctaatcatct < 1:993783‑M1/135‑134 (MQ=255) tttgagagttaaaactatcaaaactaaacaacgtttcgacgcgtgtgtaggtttccgtaatattacttagaaaggaggtgatccagccgcaggttctcctacggcaaccttgttacgacttcaccctaatcatct < 2:874648‑M1/135‑134 (MQ=255) | CATTTACCTAACGGTAAATGCGATTAATGAGTTTAGCGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > TrimmedAssembly_T66_contig_28/3048‑3183 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |