| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | TrimmedAssembly_T66_contig_28 | = 3183 | 0 (0.000) | 298 (0.390) +TGAGAGTTAAATCTCTCAAAACTAAACAAAGTTTCGACGCG |
68/178 | 1.3 | 100% | intergenic (‑135/–) | rasttk_feature_creation_tool=RNA_reps_LSU_rRNA/– | LSU rRNA ## 23S rRNA, large subunit ribosomal RNA/– |
| ? | TrimmedAssembly_T66_contig_32 | = 1640 | 0 (0.000) | intergenic (+24/–) | rasttk_feature_creation_tool=RNA_reps_SSU_rRNA/– | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/– | |||||
Only 100 of 779 total aligned reads displayed.
GTCGGTGGGGTAACCTTTTAGGAACCAGCCGCCTAAGGTGGGACAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > TrimmedAssembly_T66_contig_32/1505‑1640 | tGGGGTAACCTTTTAGGAACCAGCCGCCTAAGGTGGGACAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttct < 1:1955571‑M1/135‑5 (MQ=255) ggTAACCTTTTAGGAACCAGCTGCCTAAGGTGGGACAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcga < 1:2705897‑M2/136‑9 (MQ=255) ggTAACCTTTTAGGAACCAGCCGCCTAAGGTGGGACAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcga < 1:350305‑M2/136‑9 (MQ=255) ggTAACCTTTTAGGAACCAGCCGCCTAAGGTGGGACAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcga < 2:1248591‑M2/136‑9 (MQ=255) ggTAACCGTTTAGGAACCAGCTGCCTAAGGTGGGACAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcga < 2:1434425‑M2/136‑9 (MQ=255) tAACCTTTTAGGAACCAGCCGCCTAAGGTGGGACAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaa < 1:1652609‑M1/135‑10 (MQ=255) cTTTTAGGAACCAGCCGCCTAAGGTGGGACAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaacttt < 1:1924658‑M2/136‑15 (MQ=255) cTTTTAGGAACCAGCCGCCTAAGGTGGGACAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaacttt < 1:287961‑M2/136‑15 (MQ=255) gAACCAGCTGCCTAAGGTGGGACAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagt < 2:1862108‑M2/136‑22 (MQ=255) aCCAGCTGCCTAAGGTGGGACAGATGATTAGGGTGAAGTCGTAACACGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagtt > 1:2056734‑M2/1‑113 (MQ=255) ccAGCTGCCTAAGGTGGGACAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTCCGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagtttt > 1:574417‑M2/1‑112 (MQ=255) ccAGCTGCCTAAGGTGGGACAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagtttt > 2:200285‑M2/1‑112 (MQ=255) ccAGCCGCCTAAGGTGGGACAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagtttt < 2:1382347‑M1/136‑25 (MQ=255) ccAGCCGCCTAAGGTGGGACAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagtttt > 1:2451140‑M2/1‑112 (MQ=255) gctgcaTAAGGTGGGACAGATGATTAGGGTGAAGTCGTAACAAGTTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgag < 2:520699‑M2/136‑28 (MQ=255) gccgccTAAGGTGGGACAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgag > 2:2617404‑M1/1‑109 (MQ=255) gccgccTAAGGTGGGACAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgag > 2:770622‑M1/1‑109 (MQ=255) gccgccTAAGGTGGGACAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgag > 1:100046‑M1/1‑109 (MQ=255) gccgccTAAGGTGGGACAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGACTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgag > 1:1189659‑M1/1‑109 (MQ=255) cTAAGGTGGGACAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatt > 2:1917579‑M2/1‑104 (MQ=255) gggACAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactc < 2:1628021‑M2/135‑39 (MQ=255) cAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaat > 1:1512686‑M1/1‑93 (MQ=255) aGATGATTAGGGTGAAGTCGTAACAAGGTTGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGTAATATTACGGAAACCTACACAcgcgtcgaaacgttgtttagttttgatagttttaactctcaaa < 2:874648‑M2/135‑44 (MQ=255) aGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaa < 2:1498839‑M2/136‑45 (MQ=255) aGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaa < 1:993783‑M2/135‑44 (MQ=255) gatTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttg < 1:1026438‑M2/136‑49 (MQ=255) atTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgt < 2:1721521‑M2/136‑50 (MQ=255) ggTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgt > 1:2818546‑M1/1‑82 (MQ=255) ggTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttcttt < 2:264463‑M2/136‑55 (MQ=255) ggTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaa < 1:18274‑M2/91‑10 (MQ=255) gTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttcttt > 1:2560461‑M2/1‑81 (MQ=255) gAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttt < 1:1563596‑M1/135‑57 (MQ=255) gAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgttta > 2:1953412‑M1/1‑79 (MQ=255) gAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttattcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttt < 1:2122322‑M1/135‑57 (MQ=255) gAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttga > 2:1160549‑M2/1‑79 (MQ=255) gAAGTCGTAACAAGGTAGCCGTAGGAGAACCCGCGGCTGGATCACCTCCTTTCTAAGGACTATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaa < 2:409232‑M2/136‑58 (MQ=255) aGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaa < 1:1380471‑M2/135‑59 (MQ=255) tCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaact < 2:1558565‑M2/136‑62 (MQ=255) aCAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgacactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagata > 1:218525‑M2/1‑70 (MQ=255) cAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctat > 1:2406082‑M1/1‑69 (MQ=255) cAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctat > 1:1058645‑M1/1‑69 (MQ=255) cAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagataa < 2:2084072‑M2/136‑68 (MQ=255) cAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagataa < 1:953677‑M2/136‑68 (MQ=255) cAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagataa < 1:621652‑M2/136‑68 (MQ=255) cAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttga < 1:1251695‑M2/125‑57 (MQ=255) aGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatag < 1:1172499‑M1/136‑70 (MQ=255) tAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagct < 1:873812‑M1/135‑72 (MQ=255) tAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagct < 1:13017‑M1/135‑72 (MQ=255) tAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagct < 1:1755601‑M1/135‑72 (MQ=255) tAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagct < 1:2597366‑M1/135‑72 (MQ=255) tAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagct < 1:2631984‑M1/135‑72 (MQ=255) gCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagataatatcaaa < 1:832556‑M2/136‑75 (MQ=255) gCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatt > 1:1450489‑M2/1‑62 (MQ=255) cGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagct < 2:257945‑M1/131‑72 (MQ=255) tAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagataatatcaaatata < 1:461296‑M2/136‑79 (MQ=255) gagaACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgtgttttgggcctatagctcagctggttt > 2:2046712‑M1/1‑55 (MQ=255) agaACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagataatatcaaatatattt > 2:2136883‑M2/1‑54 (MQ=255) gaACCTGCGGCTGGATCTCCTCCTTTCTAAGGTATATGACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttcttggaatactagataatgtcaaatctattttt < 2:545393‑M2/136‑84 (MQ=255) gaACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagctcagctggtttag > 1:1874626‑M1/1‑53 (MQ=255) gaACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagataatatcaaatatattttt < 2:288646‑M2/136‑84 (MQ=255) gaACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagataatatcaaatatattttt < 2:166697‑M2/136‑84 (MQ=255) ccTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagctcagctggtttagagc < 2:844703‑M1/136‑87 (MQ=255) ccTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagctcagctggtttagagc < 2:1289589‑M1/136‑87 (MQ=255) cTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagctcagctggtttagagc > 1:319420‑M1/1‑49 (MQ=255) tGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagataatatcaaatatattttttcata > 2:673963‑M2/1‑48 (MQ=255) tGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagataatatcaaatatattttttcata < 2:1791924‑M2/136‑89 (MQ=255) tGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagataatatcaaatatattttttcata > 2:371688‑M2/1‑48 (MQ=255) tGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagataatatcaaatatattttttcata > 1:2349391‑M2/1‑48 (MQ=255) tGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagataatatcaaatatattttttcata > 1:2776320‑M2/1‑48 (MQ=255) tGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagataatatcaaatatattttttcata > 2:1070187‑M2/1‑48 (MQ=255) gCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagtttt < 1:528153‑M1/71‑25 (MQ=255) gCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagataatatcaaatatattttttcataa < 1:2225730‑M2/136‑90 (MQ=255) gCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagataatatcaaatatattttttcataa < 2:2262488‑M2/136‑90 (MQ=255) tGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagct > 2:2829134‑M1/1‑42 (MQ=255) aCCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagctcagctggtttagagcgcacgcctgataa > 1:2647830‑M1/1‑36 (MQ=255) tcctTTCTAAGGAATATTACGGACACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagataatatcaaatatattttttcataatgaaaccgagaaca > 2:2681960‑M2/1‑33 (MQ=255) tcctTTCTAAGGAATATTACGGAAACCAACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagataatatcaaatatattttttcataatgaaatcgagaaca > 2:2725781‑M2/1‑33 (MQ=255) ctTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagataatatcaaatatattttttcataatgaaaccgagaacacc < 2:604455‑M2/136‑106 (MQ=255) tCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagctcagctggtttagagcgcacgcctgataagcgtgaggt < 2:48123‑M1/136‑109 (MQ=255) tAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagctcagctggtttagagcgcacgcctgataagcgtgaggtcg > 1:2314964‑M1/1‑26 (MQ=255) tAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttggggggctatagctcagcgggtgtggagcgcacgcctgataagcgggagggcg > 2:1031709‑M1/1‑26 (MQ=255) tAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagataatatcaaatatattttttcataatgaaaccgagaacaccgcgtt < 1:1118983‑M2/136‑111 (MQ=255) tAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagataatatcaaatatattttttcataatgaaaccgagaacaccgcgtt < 2:2783695‑M2/136‑111 (MQ=255) aaTATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagataatatcaaatatattttttcataatgaaaccgagaacaccgcgttttttg < 1:2164484‑M2/136‑116 (MQ=255) aaTATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagataatatcaaatatattttttcataatgaaaccgagaacaccgcggtttttg < 1:2136634‑M2/136‑116 (MQ=255) ttttgggaaaccTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagctcagctggtttagagcgcacgcctgataagcgtgaggtcgatggttca < 1:690380‑M1/131‑119 (MQ=255) atTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagataatatcaaatatattttttcataatgaaaccgagaacaccgcgttttttgtgt < 2:731951‑M2/136‑119 (MQ=255) ggAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagataatatcaaatatattttttcataatgaaaccgagaacaccgcgttttttgagtttttt < 1:414616‑M2/136‑124 (MQ=255) aCCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagctcagctggtttagagcgcacgcctgataagcgtgaggtcgatggttcaagtccattt < 1:773676‑M1/136‑128 (MQ=255) ccTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagctcagctggtttagagcgcacgcctgataagcgtgaggtcgatggttcaagtccattta > 1:2250006‑M1/1‑8 (MQ=255) cTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagataatatcaaatatattttttcataatgaaaccgagaacaccgcgttttttgagttttttattgaa > 2:966858‑M2/1‑7 (MQ=255) cacacgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagataatatcaaatatattttttcataatgaaaccgagaacaccgcgttttttgagttttttattgaagtt < 2:1214386‑M2/136‑133 (MQ=255) acattcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagctcagctggtttagagcgcacgcctgataagcgtgaggtcgatggttcaagtccatttaggccc < 2:2218367‑M1/136‑134 (MQ=255) acacgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagataatatcaaatatattttttcataatgaaaccgagaacaccgcgttttttgagttttttattgaagttt > 1:1710798‑M2/1‑3 (MQ=255) cacgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagataatatcaaatatattttttcataatgaaaccgagaacaccgcgttttttgagttttttattgaagttta > 2:2164484‑M2/1‑2 (MQ=255) attcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagctcagctggtttagagcgcacgcctgataagcgtgaggtcgatggttcaagtccatttaggcccat > 2:78381‑M1/1‑1 (MQ=255) attcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatag < 2:2497665‑M1/70‑70 (MQ=255) attcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatag > 1:2497665‑M1/1‑1 (MQ=255) attcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttt > 2:2394666‑M1/1‑1 (MQ=255) acgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagataatatcaaatatattttttcataatgaaaccgagaacaccgcgttttttgagttttttattgaagtttaa < 2:2314259‑M2/136‑136 (MQ=255) | GTCGGTGGGGTAACCTTTTAGGAACCAGCCGCCTAAGGTGGGACAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > TrimmedAssembly_T66_contig_32/1505‑1640 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |