New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 2252681	57 (1.140)	3 (0.060)	3/322	NT	5.2%	coding (582/645 nt)	leuD	3‑isopropylmalate dehydratase small subunit
	?	AE015451	= 2252794	56 (1.170)					intergenic (+50/‑69)	leuD/PP_1987	3‑isopropylmalate dehydratase small subunit/Methlytransferase, UbiE/COQ5 family

TTTTCTTCAACAACAGCTTCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2252443‑2252681 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acagcgacCGCGTAACTTTCTGTAGGAGCGAGGAGGCCCGCACTGTCACCTACGAACTTCAGGCATCACGGAAC  <  AE015451/2252794‑2252729                                                                                                                                                                                                                                                                                                                   TTTTCTTCAACAACAGCTTCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGC                                                                       >  1:799794/1‑236                                                                                GGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCG                                                                      <  1:631510/158‑1                                                                                              CGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACCGCGTAACTTTCTGTAGGAGCGAGGAGGCCCGCACTGTCACCTACGAAC                   <  2:169162/195‑1                                                                                                       AGCTGACCATCGCCCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAG                                                                        <  2:300005/133‑1                                                                                                                                                                                                                ACGATATCGGCCTGACCTTGCAGGACAGCGACCGCGTAACTTTCTGTAGGAGCGAGGAGGCCCGC                                   >  1:630183/1‑65                                                                                                                                                                                                                ACGATATCGGCCTGACCTTGCAGGACAGCGACCGCGTAACTTTCTGTAGGAGCGAGGAGGCCCGC                                   <  2:630180/65‑1                                                                                                                                                                                                                                             ggCCGCGTAACTTTCTGTAGGAGCGAGGAGGCCCGCACTGTCACCTACGAACTTCAGGCATCACGGAAC  <  1:226810/67‑1                                                                                                                                                                                                                                                                                                                   TTTTCTTCAACAACAGCTTCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2252443‑2252681 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acagcgacCGCGTAACTTTCTGTAGGAGCGAGGAGGCCCGCACTGTCACCTACGAACTTCAGGCATCACGGAAC  <  AE015451/2252794‑2252729

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.