New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 2252681	57 (1.140)	3 (0.060)	3/322	NT	5.2%	coding (582/645 nt)	leuD	3‑isopropylmalate dehydratase small subunit
	?	AE015451	= 2252794	56 (1.170)					intergenic (+50/‑69)	leuD/PP_1987	3‑isopropylmalate dehydratase small subunit/Methlytransferase, UbiE/COQ5 family

AACAACAGCTTCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACGAGACATGACCAGCACCCAGCACATCGATGTGGTCC  >  AE015451/2252451‑2252893                                                                                                                                                                                                                                       |                                                                                                                                                                                                                     aacaacAGCTTCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGa                                                                                                                                                                                                                  <  1:513431/235‑1 (MQ=255)     acaGCTTCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAg                                                                                                                                                                                                             >  1:556158/1‑236 (MQ=255)                             cGATCATTCTCAGCGATGAAGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCgcgc                                                                                                                                                                                      <  1:754116/235‑1 (MQ=255)                                  aTTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCgccagcc                                                                                                                                                                                 <  1:560022/235‑1 (MQ=255)                                        aGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTg                                                                                                                                                                          <  1:320355/236‑1 (MQ=255)                                               aGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTc                                                                                                                                                                   <  1:644351/236‑1 (MQ=255)                                                                   gaGCAGGCCGAAGCCAACCCGGGCTACCAGCGGACCAGCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCCCTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCgccagcc                                                                                                                                                                                 <  2:238161/201‑1 (MQ=255)                                                                         gTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCt                                                                                                                                                         <  2:820692/220‑1 (MQ=255)                                                                             aaGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGCCAGCTACGCGATCAAGGCCTTCGAAGcc                                                                                                                                                                                                 >  1:42991/1‑176 (MQ=255)                                                                             aaGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACa                                                                                                                                        >  2:862321/1‑233 (MQ=255)                                                                                     ccGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGa                                                                                                                                                              <  1:215171/203‑1 (MQ=255)                                                                                     ccGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGcct                                                                                                                              <  1:117250/235‑1 (MQ=255)                                                                                      cGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACcgcgtaactttctgtaggagcgaggaggcccgcactgtcacctacgaac                                                                                                                                                                     <  2:169162‑M1/195‑50 (MQ=255)                                                                                      cGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGcctcc                                                                                                                            <  1:56875/236‑1 (MQ=255)                                                                                          cTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAATGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGc                                                                                                                        <  1:49239/236‑1 (MQ=255)                                                                                           tACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGACATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCCAGCACCGCgccagcca                                                                                                                                                                                >  2:146219/1‑179 (MQ=255)                                                                                            aCCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGc                                                                                                                                                           <  2:408842/199‑1 (MQ=255)                                                                                                 cTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGc                                                                                                                                                           >  1:355861/1‑194 (MQ=255)                                                                                                    aCCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTg                                                                                                                                                               <  2:801739/187‑1 (MQ=255)                                                                                                       aTCGGCCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTCCGAGATCGATGCGTTCCGCAAGCCCTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGcct                                                                                                                              <  1:176769/217‑1 (MQ=255)                                                                                                         cGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGAc                                                                                                                                         >  1:696775/1‑204 (MQ=255)                                                                                                            ccTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTAcg                                                                                                       <  1:534592/235‑1 (MQ=255)                                                                                                                       aggcgGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTa                                                                                            <  1:912499/235‑1 (MQ=255)                                                                                                                        ggcgGTGACCCGCCCTGATGGCAAGGTGCTGCACATCGAGATCGATGCGTACCGCAAGCTCTGCCTGCTCTACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTTCAGAAAGTTACGCGGTCGCTGTAg                                                                                           <  1:517327/235‑1 (MQ=255)                                                                                                                         gcgGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAgg                                                                                          <  1:668095/235‑1 (MQ=255)                                                                                                                               aCCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGtt                                                                                                                                                   <  2:679941/172‑1 (MQ=255)                                                                                                                                 ccgcccgGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGtt                                                                                  >  1:618210/1‑235 (MQ=255)                                                                                                                                      cgGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCg                                                                                                                                                                 >  1:473839/1‑151 (MQ=255)                                                                                                                                       ggATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCgcg                                                                                                                                                               >  2:239470/1‑150 (MQ=255)                                                                                                                                                    ctgcACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCg                                                                 <  2:618207/233‑1 (MQ=255)                                                                                                                                                        aCTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAgg                                                          >  1:605626/1‑236 (MQ=255)                                                                                                                                                               gaTCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGaaa                                                                                                             >  2:39630/1‑178 (MQ=255)                                                                                                                                                               gaTCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGcacc                                                            >  1:846112/1‑226 (MQ=255)                                                                                                                                                               gaTCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACaaa                                                   >  1:748235/1‑236 (MQ=255)                                                                                                                                                               gaTCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACaaa                                                   >  1:31460/1‑236 (MQ=255)                                                                                                                                                                 tCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTGTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACAGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGtt                                                                                                          <  1:639424/179‑1 (MQ=255)                                                                                                                                                                    aTGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCt                                              <  1:332047/236‑1 (MQ=255)                                                                                                                                                                       cGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACCAAAATCTaa                                            >  1:32670/1‑235 (MQ=255)                                                                                                                                                                          tCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAgg                                         <  2:556155/235‑1 (MQ=255)                                                                                                                                                                              cAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACaaaa                                                  >  1:422748/1‑222 (MQ=255)                                                                                                                                                                                    ctgcctgcTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAg                                          <  1:375871/224‑1 (MQ=255)                                                                                                                                                                                          ggtCAACGGTCTGGAAGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCAc                                                                                                                                                                                           <  2:11732/71‑1 (MQ=255)                                                                                                                                                                                          gcTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACGAGACa                                >  2:433630/1‑228 (MQ=255)                                                                                                                                                                                                       gACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACgaga                                  <  2:724533/213‑1 (MQ=255)                                                                                                                                                                                                       acagATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACGAGACATGACCAGCACCCAGCACATCg           <  1:115872/233‑1 (MQ=255)                                                                                                                                                                                                        aCGATATCGGCCTGACCTTGCAGGACAGCGACcgcgtaactttctgtaggagcgaggaggcccgc                                                                                                                                                                                     >  1:630183‑M1/1‑32 (MQ=255)                                                                                                                                                                                                        aCGATATCGGCCTGACCTTGCAGGACAGCGACcgcgtaactttctgtaggagcgaggaggcccgc                                                                                                                                                                                     <  2:630180‑M1/65‑34 (MQ=255)                                                                                                                                                                                                        aCGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACGAGACATGACCAGCACCCAGCACATCg           >  1:722534/1‑235 (MQ=255)                                                                                                                                                                                                        aCGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACGAGACATGACCAGCACCCAGCACATCGa          >  1:150260/1‑236 (MQ=255)                                                                                                                                                                                                           atatCGCCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACGAGACATGa                             <  2:834623/214‑1 (MQ=255)                                                                                                                                                                                                               cGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCgggg                                                                                   >  2:161081/1‑155 (MQ=255)                                                                                                                                                                                                                ggCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACGAGACATGACCAGCACCCAGCACATCGATGTGGTct  >  2:557536/1‑235 (MQ=255)                                                                                                                                                                                                                ggCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGAGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGAAGGCGCGGGTATACCCGCGa                                                                         >  1:224965/1‑165 (MQ=255)                                                                                                                                                                                                                  ccTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCCAAAGGAACGAGAc                                 >  2:453807/1‑203 (MQ=255)                                                                                                                                                                                                                    tGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTAcg                                                                                                       <  2:689842/131‑1 (MQ=255)                                                                                                                                                                                                                    tGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGca                                                        >  2:526147/1‑178 (MQ=255)                                                                                                                                                                                                                    tGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACGAGACATGAccagcacccagc                 <  2:748232/217‑1 (MQ=255)                                                                                                                                                                                                                         ttGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGCAGTTCGTCGGTGACAGTGCGGGCCTCCTCGCTc                                                                                                                      >  2:8551/1‑111 (MQ=255)                                                                                                                                                                                                                         ttGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACGAGACATGACCAGCACCCAGCACATCGAt         >  1:856269/1‑220 (MQ=255)                                                                                                                                                                                                                         ttGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACGAGACATGACCAGCACCCAGCACATCGATGTgg     >  2:555276/1‑224 (MQ=255)                                                                                                                                                                                                                         ttGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGGTTACCCGCGAAGCGGCCGGCACAGGcaacaaga                                                  >  2:115871/1‑177 (MQ=255)                                                                                                                                                                                                                                    cGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACga                                    >  1:827160/1‑182 (MQ=255)                                                                                                                                                                                                                                    cGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACga                                    <  2:827157/182‑1 (MQ=255)                                                                                                                                                                                                                                     ggccgcgtaactttctgtaggagcgaggaggcccgcactgtcacctacgaacttcaggcatcacggaac                                                                                                                                                    <  1:226810‑M1/67‑67 (MQ=255)                                                                                                                                                                                                                                       cgcgATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTcc                                                                                                                     <  2:385442/98‑1 (MQ=255)                                                                                                                                                                                                                                       cgcgATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTcc                                                                                                                     >  1:385445/1‑98 (MQ=255)                                                                                                                                                                                                                                       |                                                                                                                                                                                                                     AACAACAGCTTCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACGAGACATGACCAGCACCCAGCACATCGATGTGGTCC  >  AE015451/2252451‑2252893

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.