New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 2252681	57 (1.140)	3 (0.060)	3/322	NT	5.2%	coding (582/645 nt)	leuD	3‑isopropylmalate dehydratase small subunit
	?	AE015451	= 2252794	56 (1.170)					intergenic (+50/‑69)	leuD/PP_1987	3‑isopropylmalate dehydratase small subunit/Methlytransferase, UbiE/COQ5 family

AGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACGAGACATGACCAGCACCCAGCACATCGATGTGGTCCAACGCCAGTTCGGCGAGCAGGCCAGCGCCTACCTCAGCAGCGCCGTGCACGCCCAAGGCAGTGAATTCGCCCTGCTGCAGGCTGAGCTGGCAGGGCAGGCCCATGCCCGCGTGCTGGA  >  AE015451/2252569‑2253011                                                                                                                                                                                                                                  |                                                                                                                                                                                                                          aggcgGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTa                                                                                                                                                                                                                  <  1:912499/235‑1 (MQ=255)  ggcgGTGACCCGCCCTGATGGCAAGGTGCTGCACATCGAGATCGATGCGTACCGCAAGCTCTGCCTGCTCTACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTTCAGAAAGTTACGCGGTCGCTGTAg                                                                                                                                                                                                                 <  1:517327/235‑1 (MQ=255)   gcgGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAgg                                                                                                                                                                                                                <  1:668095/235‑1 (MQ=255)           ccgcccgGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGtt                                                                                                                                                                                                        >  1:618210/1‑235 (MQ=255)                              ctgcACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCg                                                                                                                                                                                       <  2:618207/233‑1 (MQ=255)                                  aCTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAgg                                                                                                                                                                                >  1:605626/1‑236 (MQ=255)                                         gaTCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGcacc                                                                                                                                                                                  >  1:846112/1‑226 (MQ=255)                                         gaTCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACaaa                                                                                                                                                                         >  1:748235/1‑236 (MQ=255)                                         gaTCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACaaa                                                                                                                                                                         >  1:31460/1‑236 (MQ=255)                                              aTGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCt                                                                                                                                                                    <  1:332047/236‑1 (MQ=255)                                                 cGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACCAAAATCTaa                                                                                                                                                                  >  1:32670/1‑235 (MQ=255)                                                    tCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAgg                                                                                                                                                               <  2:556155/235‑1 (MQ=255)                                                        cAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACaaaa                                                                                                                                                                        >  1:422748/1‑222 (MQ=255)                                                              ctgcctgcTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAg                                                                                                                                                                <  1:375871/224‑1 (MQ=255)                                                                    gcTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACGAGACa                                                                                                                                                      >  2:433630/1‑228 (MQ=255)                                                                                 gACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACgaga                                                                                                                                                        <  2:724533/213‑1 (MQ=255)                                                                                 acagATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACGAGACATGACCAGCACCCAGCACATCg                                                                                                                                 <  1:115872/233‑1 (MQ=255)                                                                                  aCGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACGAGACATGACCAGCACCCAGCACATCg                                                                                                                                 >  1:722534/1‑235 (MQ=255)                                                                                  aCGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACGAGACATGACCAGCACCCAGCACATCGa                                                                                                                                >  1:150260/1‑236 (MQ=255)                                                                                     atatCGCCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACGAGACATGa                                                                                                                                                   <  2:834623/214‑1 (MQ=255)                                                                                         cGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCgggg                                                                                                                                                                                                         >  2:161081/1‑155 (MQ=255)                                                                                          ggCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACGAGACATGACCAGCACCCAGCACATCGATGTGGTct                                                                                                                        >  2:557536/1‑235 (MQ=255)                                                                                          ggCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGAGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGAAGGCGCGGGTATACCCGCGa                                                                                                                                                                                               >  1:224965/1‑165 (MQ=255)                                                                                            ccTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCCAAAGGAACGAGAc                                                                                                                                                       >  2:453807/1‑203 (MQ=255)                                                                                              tGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGca                                                                                                                                                                              >  2:526147/1‑178 (MQ=255)                                                                                              tGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACGAGACATGAccagcacccagc                                                                                                                                       <  2:748232/217‑1 (MQ=255)                                                                                                   ttGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACGAGACATGACCAGCACCCAGCACATCGAt                                                                                                                               >  1:856269/1‑220 (MQ=255)                                                                                                   ttGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACGAGACATGACCAGCACCCAGCACATCGATGTgg                                                                                                                           >  2:555276/1‑224 (MQ=255)                                                                                                   ttGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGGTTACCCGCGAAGCGGCCGGCACAGGcaacaaga                                                                                                                                                                        >  2:115871/1‑177 (MQ=255)                                                                                                              cGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACga                                                                                                                                                          <  2:827157/182‑1 (MQ=255)                                                                                                              cGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACga                                                                                                                                                          >  1:827160/1‑182 (MQ=255)                                                                                                                  gcgAGCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCGCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACga                                                                                                                                                          <  2:71171/178‑1 (MQ=255)                                                                                                                   cgATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGCTCGTAGGTGGCAGTGCGGGCCTCCTCGCTCCTACAGAAAGTCACGCGGTCGCTGTAGGCGCGGGTTTACCcgcgcctacag                                                                                                                                                                                         <  2:920967/146‑8 (MQ=255)                                                                                                                      tCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAATGAACGAGACATGAccagc                                                                                                                                              <  2:466119/186‑1 (MQ=255)                                                                                                                                   aGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCTAAGAGGCCg                                                                                                                                                                                       >  1:228025/1‑132 (MQ=255)                                                                                                                                   aGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGCGGCCGGCACAGGCCACAAAAATCTAAAGGAACGAGACATGACCAGCACCCAGCACATCGATGTGGTCCAACGCCAGt                                                                                                               >  1:15729/1‑204 (MQ=255)                                                                                                                                       aaGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACGAGACATGACCAGCACCCAGCACATCGATGTGGTCCAACGCCAGTTCGGCGAGCAGGCCAGCGCCTACCTCAGCAGCGCCg                                                                           <  1:862324/236‑1 (MQ=255)                                                                                                                                           aCCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACGAGACATGACCAGCACCCAGCACATCGATGTGGTCCAACGCCAGTTCGGc                                                                                                          <  1:437574/201‑1 (MQ=255)                                                                                                                                                gccagccaGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACGAGACATGACCAGCACCCAGCACATCGATGTGGTCCAACGCCAGTTCGGCGAg                                                                                                       >  2:637675/1‑199 (MQ=255)                                                                                                                                                  cagccagcCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACGAGACATGACCAGCACCCAGCACATCGATGTGGTCCAACGCCAGTTCGGCGAGCAGGCCAGCGCCTACCTCAGCAgcgc                                                                             >  1:341947/1‑223 (MQ=255)                                                                                                                                                  cagccagcCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGAGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACGAGACATGACCAGCACCCAGCACATCGATGTGGTCCAACGCCAGTTCGGCGAGCAGGCCAGCGCCTACCTCAGCAGCGCCGTGCACGCCCa                                                                 >  1:529900/1‑235 (MQ=255)                                                                                                                                                     ccagccTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAgg                                                                                                                                                               <  1:706826/138‑1 (MQ=255)                                                                                                                                                           ttGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAgg                                                                                                                                                               <  2:624447/132‑1 (MQ=255)                                                                                                                                                              gCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACGAGACATGACCAGCACCCAGCACATCGATGTGGTCCAACGCCAGTTCGGCGAGCAGGCCAGCGCCTACCTCAGCAGCGCCGTGCACGCCCAAGGCAGTGAATTc                                                    <  1:433633/236‑1 (MQ=255)                                                                                                                                                                 gTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGgcc                                                                                                                                                                                                                        <  1:226810‑M2/69‑4 (MQ=255)                                                                                                                                                                   tCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACGAGACATGACCAGCACCCAGCACATc                                                                                                                                  <  2:837190/153‑1 (MQ=255)                                                                                                                                                                      gTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACGAGACATGACCAGCACCCAGCACATCGATGTGGTCCAACGCCAGTTCgg                                                                                                           >  2:749761/1‑173 (MQ=255)                                                                                                                                                                      gTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACGAGACATGACCAGCACCCAGCACATCGATGTGGTCCAACGCCAGTTCGGCGAGCAGGCCAGCGCCTACCTCAGCAGCGCCGTGCACGCCCAAGGCAGTGAATTCGCCctgc                                             >  1:73407/1‑235 (MQ=255)                                                                                                                                                                       tGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACGAGACATGACCAGCACCCAGCACATCGATGTGGTCCAACGCCAGTTCGGCGAGCAGGCCAGCGCCTACCTCAGCAGCGCCGTGc                                                                        >  1:217511/1‑207 (MQ=255)                                                                                                                                                                                 aGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACGAGACATGACCAGCACCCAGCACATCGATGTGGTCCAACGCCAGTTCGGCGAGCAGGCCAGCGCCTACCTCAGCAGCGCCGTGCACGCCCAAGGCAGTGAATTCGCCCTGCTGCAGGCTGAGc                                 <  1:5183/236‑1 (MQ=255)                                                                                                                                                                                  gTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGgtcgctgtcctgcaaggtcaggccgatatcgtccagaccgttgagcaggcagtgcttgcggaacgcatcgatctcgaagtgcagcaccttgccatccgggcgggtcaccgcctgcgcctgcaggtcgatggtcagctggtagcccg                                                                         <  2:169162‑M2/195‑147 (MQ=255)                                                                                                                                                                                        aGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGttt                                                                                                                                                                                                       <  2:225906/63‑1 (MQ=255)                                                                                                                                                                                        aGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGttt                                                                                                                                                                                                       >  1:225908/1‑63 (MQ=255)                                                                                                                                                                                          gTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACGAGACATGACCAGCACCCAGCACATCGATGTGGTCCAACGCCAGTTCGGCGAGCAGGCCAGCGCCTACCTCAGCAGCGCCGTGCACGCCCAAGGCAGTGAATTCGCCCTGCTGCAGGCTGAGCTggcaggg                         >  1:344830/1‑235 (MQ=255)                                                                                                                                                                                                  gCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGgtcgctgtcctgcaaggtcaggccgatatcgt                                                                                                                                                                                           >  1:630183‑M2/1‑33 (MQ=255)                                                                                                                                                                                                  gCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGgtcgctgtcctgcaaggtcaggccgatatcgt                                                                                                                                                                                           <  2:630180‑M2/65‑33 (MQ=255)                                                                                                                                                                                                    gggCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGgc                                                                                                                                                                                                               >  1:655408/1‑43 (MQ=255)                                                                                                                                                                                                              gCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACGAGACATGACCAGCACCCAGCACATCGATGTGGTCCAACGCCAGTTCGGCGAGCAGGCCAGCGCCTACCTCAGCAGCGCCGTGCACGCCCAAGGCAGTGAATTCGCCCTGCTGCAGGCTGAGCTGGCAGGGCAGGCCCATGCCCGCGTGCTg    >  1:484688/1‑236 (MQ=255)                                                                                                                                                                                                                       gAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACGAGACATGACCAGCACCCAGCACATCGATGTGGTCCAACGCCAGTTCGGCGAGCAGGCCAGCGCCTACCTCAGCAGCGCCGTGCACGCCCAAGGCAGTGAATTCGCCCTGCTGCAGGCTGAGCTGGCAGCCCAGGTCCagc               <  2:722531/216‑3 (MQ=255)                                                                                                                                                                                                                             tACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACGAGACATGACCAGCACCCAGCACATCGATGTGGTCCAACGCCAGt                                                                                                               >  2:329587/1‑114 (MQ=255)                                                                                                                                                                                                                             tACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACGAGACATGACCAGCACCCAGCACATCGATGTGGTCCAACGCCAGTTCGGc                                                                                                          <  2:166198/119‑1 (MQ=255)                                                                                                                                                                                                                             tACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACGAGACATGACCAGCACCCAGCACATCGATGTGGTCCAACGCCAGTTCGGCGAGCAGGCCAGCGCCTACCTCAGCAGCGCCGTGCACGCCCAAGGCAGTGAATTCGCCCTGCTGCAGGCTGAGCTGGCAGGGCAGGCCCATGCCCGCGTGCTGGa  >  1:30188/1‑223 (MQ=255)                                                                                                                                                                                                                             tACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACGAGACATGACCAGCACCCAGCACATCGATGGGGTCCAACGCCAGTTCGGc                                                                                                          >  1:166199/1‑119 (MQ=255)                                                                                                                                                                                                                             tACGCGGTCGCTGTAGGCGCGGGTGTACCCGCGAAGAGGCCGGCACAGGCAACAAAAAGCTAAAGGAACGAGACATGACCAGCACCCAGCACATCGATGTGGTCCAACGCCAGTTCGGCGAGCAGGCCAGCGCCTACCTcagca                                                                                 <  2:140724/144‑1 (MQ=255)                                                                                                                                                                                                                                 cgGTCGCTGTAGGCGCGGGTTTCCCCGCGAGGAGGCCGGCACAGGCAACAAAAAGCTAAAGGAACGAGACATGACCAGCACCCAGCACATCGATGTGGTCCAACGCCAGTTCGGCGAGCAGGCCAGCGCCTACCTCAGCAGCGCCGTGCACGCCCAAGGCAGTGAATTCGCCCTGCTGCAGGCTGAGc                                 <  2:306447/188‑1 (MQ=255)                                                                                                                                                                                                                                  |                                                                                                                                                                                                                          AGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAGCCAAGCACCGCGCCAGCCAGCCTTGGCTGTTCCGTGATGCCTGAAGTTCGTAGGTGACAGTGCGGGCCTCCTCGCTCCTACAGAAAGTTACGCGGTCGCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAATCTAAAGGAACGAGACATGACCAGCACCCAGCACATCGATGTGGTCCAACGCCAGTTCGGCGAGCAGGCCAGCGCCTACCTCAGCAGCGCCGTGCACGCCCAAGGCAGTGAATTCGCCCTGCTGCAGGCTGAGCTGGCAGGGCAGGCCCATGCCCGCGTGCTGGA  >  AE015451/2252569‑2253011

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.