New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 2494736	29 (0.580)	3 (0.060)	3/320	NT	8.2%	intergenic (‑99/‑56)	PP_2187/PP_2188	Universal stress protein family/putative tRNA‑(Ms(2)io(6)a)‑hydroxylase
	?	AE015451	= 2494831	40 (0.840)					coding (40/618 nt)	PP_2188	putative tRNA‑(Ms(2)io(6)a)‑hydroxylase

CGCACTGTGATCATGCCGTTTGTCGCACATCAGCAGGTGCAGGCGCGCGCCGGTGATGCCGGCAATCAGCTTGGCCCGAGTAAGCGCCCGGCTGTGGGCGTGCGCGGGGTCGAGGACGACGAGGATGCTGCGGACGGCTTGCATGGGCGTAAACTCCCTTCGATGATGGCGACCAGTGCCTGACTATAGTCGGCGCTTTCACCTCCAGCGCTTGATGTACATCAAGCATAGTCACTGGCGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2494494‑2494736 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcgtcgGGCAGCCAAGAAAGGCGTCGATTTCGGGGATCAGGGACATAAGCGTGCAACCACACAGAACAGGCAGGGTCGGCGATTATACCGGCGGCGGCTGGCGAC  <  AE015451/2494831‑2494733                                                                                                                                                                                                                                                                                                                                                        CGCACTGTGATCATGCCGTTTGTCGCACATCAGCAGGTGCAGGCGCGCGCCGGTGATGCCGGCAATCAGCTTGGCCCGAGTAAGCGCCCGGCTGTGGGCGTGCGCGGGGTCGAGGACGACGAGGATGCTGCGGACGGCTTGCATGGGCGTAAACTCCCTTCGATGATGGCGACCAGTGCCTGACTATAGTCGGCGCTTTCACCTCCAGCGCTTGATGTACATCAAGCATAGTCAC                                                                                                             >  1:894775/1‑235                                                        ATGCCGGCAATCAGCTTGGCCCGAGTAAGCGCCCGGCTGTGGGCGTGCGCGGGGTCGAGGACGACGAGGATGCTGCGGACGGCTTGCATGGGCGTAAACTCCCTTCGATGATGGCGACCAGTGCCTGACTATAGTCAGCGCTTTCACCTCCAGCGCTTGATGTACATCAAGCATAGTCACT                                                                                                            >  2:15528/1‑181                                                                                                            GGTCGAGGACGACGAGGATGCTGCGGACGGCTTGCATGGGCGTAAACTCCCTTCGATGATGGCGACCAGTGCCTGACTATAGTCGGCGCTTTCACCTCCAGCGCTTGATGTACATCAAGCATAGTCACTGGCGTCGGGCAGCCAAGAAAGGCGTCGATTTCGGGGATCAGGGACATAAGCGTGCAACCACACAGAACAGGCAGGGTCGGCGATTATACCGGCGGCGGCTGGCGAC  <  2:563211/235‑1                                                                                                                        CGAGGATGCTGCGGACGGCTTGCATGGGCGTAAACTCCCTTCGATGATGGCGACCAGTGCCTGACTATAGTCGGCGCTTTCACCTCCAGCGCTTGATGTACATCAAGCATAGTCACTGGCGTCGGGCAGCCAAGAAAGGCGTCGATTTCGGGGATCAGGGACATAAGCGTGCAAC                                                  <  1:776750/175‑1                                                                                                                                                                                                      TTCACCTCCAGCGCTTGATGTACATCAAGCATAGTCACTGGCGTCGGGCAGCCAAGAAAGGCGTCGATTTCGGGGATCAGGGACATAAGCGTGCAACCACACAGAACAGGCAGGGT                               <  2:875964/116‑1                                                                                                                                                                                                                                                                                                                                                        CGCACTGTGATCATGCCGTTTGTCGCACATCAGCAGGTGCAGGCGCGCGCCGGTGATGCCGGCAATCAGCTTGGCCCGAGTAAGCGCCCGGCTGTGGGCGTGCGCGGGGTCGAGGACGACGAGGATGCTGCGGACGGCTTGCATGGGCGTAAACTCCCTTCGATGATGGCGACCAGTGCCTGACTATAGTCGGCGCTTTCACCTCCAGCGCTTGATGTACATCAAGCATAGTCACTGGCGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2494494‑2494736 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcgtcgGGCAGCCAAGAAAGGCGTCGATTTCGGGGATCAGGGACATAAGCGTGCAACCACACAGAACAGGCAGGGTCGGCGATTATACCGGCGGCGGCTGGCGAC  <  AE015451/2494831‑2494733

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.