New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 2494736	29 (0.580)	3 (0.060)	3/320	NT	8.2%	intergenic (‑99/‑56)	PP_2187/PP_2188	Universal stress protein family/putative tRNA‑(Ms(2)io(6)a)‑hydroxylase
	?	AE015451	= 2494831	40 (0.840)					coding (40/618 nt)	PP_2188	putative tRNA‑(Ms(2)io(6)a)‑hydroxylase

GTTTGTCGCACATCAGCAGGTGCAGGCGCGCGCCGGTGATGCCGGCAATCAGCTTGGCCCGAGTAAGCGCCCGGCTGTGGGCGTGCGCGGGGTCGAGGACGACGAGGATGCTGCGGACGGCTTGCATGGGCGTAAACTCCCTTCGATGATGGCGACCAGTGCCTGACTATAGTCGGCGCTTTCACCTCCAGCGCTTGATGTACATCAAGCATAGTCACTGGCGTCGCCAGCCGCCGCCGGTATAATCGCCGACCCTGCCTGTTCTGTGTGGTTGCACGCTTATGTCCCTGATCCCCGAAATCGACGCCTTTCTTGGCTGCCCGACGCCAGATGCCTGGATCGAAGCGGCGCTCGCCGACCAGGAAACCCTGCTGATCGACCACAAGAACTGCGAGTTCAAGGCCGCCAGCACGGCCTTGAGCCTGATCGCCAAGTACAACACTCACCTGGATCTGAT  >  AE015451/2494511‑2494967                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                        gTTTGTCGCACATCAGCAGGTGCAGGCGCGCGCCGGTGATGCCGGCAATCAGCTTGGCCCGAGTAAGCGCCCGGCTGTGGGCGTGCGCGGGGTCGAGGACGACGAGGATGCTGCGGACGGCTTGCATGGGCGTAAACTCCCTTCGATGATGGCGACCAGTGCCTGACTATAGTCGGCGCTTTCACCTCCAGCGCTTGATGTACATCAAGCATAGTCACTGGCGTCGCCAgccgccg                                                                                                                                                                                                                               >  1:823276/1‑236 (MQ=255)    tGTCGCACATCAGCAGGTGCAGGCGCGCGCCGGTGATGCCGGCAATCAGCTTGGCCCGAGTAAGCGCCCGGCTGTGGGCGTGCGCGGGGTCGAGGACGACGAGGATGCTGCGGACGGCTTGCATGGGCGTAAACTCCCTTCGATGATGGCGACCAGTGCCTGACTATAGTCGGCGCTTTCACCTCCAGCGCTTGATGTACATCAAGCATAGTCACTGGCGTCGCCAGccgccgccg                                                                                                                                                                                                                            >  1:411202/1‑236 (MQ=255)                       cAGGCGCGCGCCGGTGATGCCGGCAATCAGCTTGGCCCGAGTAAGCGCCCGGCTGTGGGCGTGCGCGGGGTCGAGGACGACGAGGATGCTGCGGACGGCTTGCATGGGCGTAAACTCCCTTCGATGATGGCGACCAGTGCCTGACTATAGTCGGCGCTTTCACCTCCAGCGCTTGATGTACATCAAGCATAGTCACTGGCGTCGCCAGCCGCCGCCGGTATAATCGCCGAccc                                                                                                                                                                                                            <  2:411199/233‑1 (MQ=255)                                 ccGGTGATGCCGGCAATCAGCTTGGCCCGAGTAAGCGCCCGGCTGTGGGCGTGCGCGGGGTCGAGGACGACGAGGATGCTGCGGACGGCTTGCATGGGCGTAAACTCCCTTCGATGATGGCGACCAGTGCCTGACTATAGTCGGCGCTTTCACCTCCAGCGCTTGATGTACATCAAGCATAGTCACTGGCGTCGCCAGCCGCCGCCGGTATAATCGCCGACCCTGCCTGTTCtgt                                                                                                                                                                                                >  1:482536/1‑235 (MQ=255)                                             gCAATCAGCTTGGCCCGAGTAAGCGCCCGGCTGTGGGCGTGCGCGGGGTCGAGGACGACGAGGATGCTGCGGACGGCTTGCATGGGCGTAAACTCCCTTCGATGATGGCGACCAGTGCCTGACTATAGTCGGCGCTTTCACCTCCAGCGCTTGATGTACATCAAGCATAGTCACTGGCGTCGCCAGCCGCCGCCGGTATAATCGCCGACCCTGCCTGTTCTGTGTGGTTGCACGc                                                                                                                                                                                    <  1:469849/235‑1 (MQ=255)                                               aaTCAGCTTGGCCCGAGTAAGCGCCCGGCTGTGGGCGTGCGCGGGGTCGAGGACGACGAGGATGCTGCGGACGGCTTGGATGGGCGTAAACTCCCTTCGATGATGGCGACCAGTGCCTGACTATAGTCGGCGCTTTCACCTCCAGCGCTTGATGTACATCAAGCATAGTCACTGGCGTCGCCAGCCGCCGCCGGTATAATCGCCGACCCTGCCTGTTCTGTGTGGTTGCACGCTTa                                                                                                                                                                                 >  1:504829/1‑236 (MQ=255)                                                aTCAGCTTGGCCCGAGTAAGCGCCCGGCTGTGGGCGTGCGCGGGGTCGAGGACGACGAGGATGCTGCGGACGGCTTGCATGGGCGTAAACTCCCTTCGATGATGGCGACCAGTGCCTGACTATAGTCGGCGCTTTCACCTCCAGCGCTTGATGTACATCAAGCATAGTCACTGGCGTCGCCAGCCGCCGCCGGTATAATCGcc                                                                                                                                                                                                                 <  2:853142/203‑1 (MQ=255)                                                 tCAGCTTGGCCCGAGTAAGCGCCCGGCTGTGGGCGTGCGCGGGGTCGAGGACGACGAGGATGCTGCGGACGGCTTGCATGGGCGTAAACTCCCTTCGATGATGGCGACCAGTGCCTGACTATAGTCGGCGCTTTCACCTCCAGCGCTTGATGTACATCAAGCATAGTCACTGGCGTCGCCAGCCGCCGCCGGTATAATCGCCGACCCTGCCTGTTCTGTGTGGTTg                                                                                                                                                                                         <  1:261790/226‑1 (MQ=255)                                                                             gtgGGCGTGCGCGGGGTCGAGGACGACGAGGATGCTGCGGACGGCTTGCATGGGCGTAAACTCCCTTCGATGATGGCGACCAGTGCCTGACTATAGTCGGCGCTTTCACCTCCAGCGCTTGATGTACATCAAGCATAGTCACTGGCGTCGCCAGCCGCCGCCGGTATAATCGCCGACCCTGCCTGTTCTGTGTGGTTGCACGCTTATGTCCCTGATCCCCGAAATCGACGCCt                                                                                                                                                      >  2:828360/1‑233 (MQ=255)                                                                                           ggTCGAGGACGACGAGGATGCTGCGGACGGCTTGCATGGGCGTAAACTCCCTTCGATGATGGCGACCAGTGCCTGACTATAGTCGGCGCTTTCACCTCCAGCGCTTGATGTACATCAAGCATAGTCACTGGCGTCGggcagccaagaaaggcgtcgatttcggggatcagggacataagcgtgcaaccacacagaacaggcagggtcggcgattataccggcggcggctggcgac                                                                                                                                      <  2:563211‑M1/235‑100 (MQ=255)                                                                                                       cgaGGATGCTGCGGACGGCTTGCATGGGCGTAAACTCCCTTCGATGATGGCGACCAGTGCCTGACTATAGTCGGCGCTTTCACCTCCAGCGCTTGATGTACATCAAGCATAGTCACTGGCGTCGggcagccaagaaaggcgtcgatttcggggatcagggacataagcgtgcaac                                                                                                                                                                                      <  1:776750‑M1/175‑52 (MQ=255)                                                                                                                             cATGGGCGTAAACTCCCTTCGATGATGGCGACCAGTGCCTGACTATAGTCGGCGCTTTCACCTCCAGCGCTTGATGTACATCAAGCATAGTCACTGGCGTCGCCAGCCGCCGCCGGTATAATCGCCGACCCTGCCTGTTCTGTGTGGTTGCACGCTTATGTCCCTGATCCCCGAAATCGACGCCTTTCTTGGCTGCCCGACGCCAGATGCCTGGATCGAAGCGGCGCTCGCCGAcc                                                                                                   <  1:414319/236‑1 (MQ=255)                                                                                                                                               tCGATGATGGCGACCAGTGCCTGACTATAGTCGGCGCTTTCACCTCCAGCGCTTGATGTACATCAAGCATAGTCACTGGCGTCGCCAGCCGCCGCCGGTATAATCGCCGACCCTGCCTGTTCTGTGTGGTTGCAc                                                                                                                                                                                      >  2:927157/1‑135 (MQ=255)                                                                                                                                                    gatgGCGACCAGTGCCTGACTATAGTCGGCGCTTTCACCTCCAGCGCTTGATGTACATCAAGCATAGTCACTGGCGTCGCCAGCCGCCGCCGGTATAATCGCCGACCCTGCCTGTTCTGTGTGGTTGCACGCTTATGTCCCTGATCCCCGAAATCGACGCCTTTCTTGGCTGCCCGACGCCAGATGCCTGGATCGAAGCGGCGCTCGCCGACCAGGAAACCCTGCTGATc                                                                                  <  2:647910/230‑1 (MQ=255)                                                                                                                                                              aGTGCCTGACTATAGTCGGCGCTTTCACCTCCAGCGCTTGATGTACATCAAGCATAGTCACTGGCGTCGCCAGCCGCCGCCGGTATAATCGCCGACCCTGCCTGTTCTGTGTGGTTGCACGCTTATGTCCCTGATCCCCGAAATCGACGCCTTTCTTGGCTGCCCGACGCCAGATGCCTGGATCGAAGCGGCGCTCGcct                                                                                                      >  2:591795/1‑199 (MQ=255)                                                                                                                                                                                    tttCACCTCCAGCGCTTGATGTACATCAAGCATAGTCACTGGCGTCGCCAGCCGCCGCCGGTATAATCGCCGACCCTGCCTGTTCTGTGTGGTTGCACGCTTATGTCCCTGATCCCCGAAATCGACGCCTTTCTTGGCTGCCCGACGCCAGATGCCTGGATCGAAGCGGCGCTCGCCGACCAGGAAACCCTGCTGATCGACCACAAGAACTg                                                                    >  2:903790/1‑212 (MQ=255)                                                                                                                                                                                     ttCACCTCCAGCGCTTGATGTACATCAAGCATAGTCACTGGCGTCGggcagccaagaaaggcgtcgatttcggggatcagggacataagcgtgcaaccacacagaacaggcagggt                                                                                                                                                                   <  2:875964‑M1/116‑71 (MQ=255)                                                                                                                                                                                       cACCTCCAGCGCTTGATGTACATCAAGCATAGTCACTGGCGTCGCCAGCCGCCGCCGGTATAATCGCCGACCCTGCCTGTTCTGTGTGGTTGCACGCTTATGTCCCTGATCCCCGAAATCGACGCCTTTCTTGGCTGCCCGACGCCAGATGCCTGGATCGAAGCGGCGCTCGCCGACCAGGAAACCCTGCTGATCGACCACAAGAACTGCGAGTTCAAGgccgtgctggcggc                                            >  2:673091/1‑223 (MQ=255)                                                                                                                                                                                                 gcTTGATGTACATCAAGCATAGTCACTGGCGTCGCCAGCCGCCGCCGGTATAATCGCCGACCCTGCCTGTTCTGTGTGGTTGCACGCTTATGTCCCTGATCCCCGAAATCGACGCCTTTCTTGGCTGCCCGACGCCAGATGCCTGGATCGAAGCGGCGCTCGCCGACCAGGAAACCCTGCTGATCGACCACAAGAACTGCGAGTTCAAGGCCGCCAGCACGGCCTTGAGCCTGATc                               <  1:236437/236‑1 (MQ=255)                                                                                                                                                                                                 gcTTGATGTACATCAAGCATAGTCACTGGCGTCGCCAGCCGCCGCCGGTATAATCGCCGACCCTGCCTGTTCTGTGTGGTTGCACGCTTATGTCCCTGATCCCCGAAATCGACGCCTTTCTTGGCTGCCCGACGCCAGATGCCTGGATCGAAGCGGCGCTCGCCGACCAGGAAACCCTGCTGATCGACCACAAGAACTGCGAGTTCAAGGCCGCCAGCACGGCCTTGAGCCTGATc                               <  1:364029/236‑1 (MQ=255)                                                                                                                                                                                                        gTACATCAAGCATAGTCACTGGCGTCGCCAGCCGCCGCCGGTATAATCGCCGACCCTGCCTGTTCTGTGTGGTTGCACGCTTATGTCCCTGATCCCCGAAATCGACGCCTTTCTTGGCTGCCTGACGCCAGATGCCTGGATCGAAGCGGCGCTCGCCGACCAGGAAACCCTGCTGATCGACCACAAGAACTGCGAGTTCAAGGCCGCCa                                                   <  1:515652/209‑1 (MQ=255)                                                                                                                                                                                                        gTACATCAAGCATAGTCACTGGCGTCGCCAGCCGCCGCCGGTATAATCGCCGACCCTGCCTGTTCTGTGTGGTTGCACGCTTATGTCCCTGATCCCCGAAATCGACGCCTTTCTTGGCTGCCCGACGCCAGATGCCTGGATCGAAGCGGCGCTCGCCGACCAGGAAACCCTGCTGATCGACCACAAGAACTGCGAGTTCAAGGCCGCCa                                                   >  2:515649/1‑209 (MQ=255)                                                                                                                                                                                                          aCATCAAGCATAGTCACTGGCGTCGCCAGCCGCCGCCGGTATAATCGCCGACCCTGCCTGTTCTGTGTGGTTGCACGCTTATGTCCCTGATCCCCGAAATAGACGCCTTTCTTGGCTGCCCGACGCCAGAt                                                                                                                               <  2:729312/131‑1 (MQ=255)                                                                                                                                                                                                          aCATCAAGCATACTCACTGGCGTCGCCAGCCGCCGCCGGTATAATCGCCGACCCTGCCTGTTCTGTGTGGTTGCACGCTTATGTCCCTGATCCCCGAAATCGACGCCTTTCTTGGCTGCCCGACGCCAGATGCCTGGATCGAAGCGGCGCTCGCCGACCAGGAAACCCTGCTGATCGACCACAAGAACTGCGAGTTCAAGGCCGCCAGCACGGCCTTGAGcc                                    <  1:87112/222‑1 (MQ=255)                                                                                                                                                                                                                aGCATAGTCACTGGCGTCGCCAGCCGCCGCCGGTATAATCGCCGAcc                                                                                                                                                                                                             >  2:272211/1‑47 (MQ=255)                                                                                                                                                                                                                aGCATAGTCACTGGCGTCGCCAGCCGCCGCCGGTATAATCGCCGAcc                                                                                                                                                                                                             <  1:272214/47‑1 (MQ=255)                                                                                                                                                                                                                  cATAGTCACTGGCGTCGCCAGCCGCCGCCGGTATAATCGCCGACCCTGCCTGTTCTGTGTGGTTGCACGCTTATGTCCCTGATCCCCGAAATCGACGCCTTTCTTGGCTGCCCGACGCCAGATGCCTGGATCGAAGCGGCGCTCGCCGACCAGGAAACCCTGCTGATCGACCACAAGAACTGCGAGTTCAAGGCCGCCAGCACGGCCTTGAGCCTGATCGCCAAGTACAACACTc               <  1:456174/235‑1 (MQ=255)                                                                                                                                                                                                                   aTAGTCACTGGCGTCGCCAGCCGCCGCCGGTATAATCGCCGACCCTGCCTGTTCTGTGTGGTTGCACGCTTATGTCCCTGATCCCCGAAATCGACGCCTTTCTTGGCTGCCCGACGCCAGATGCCTGGATCGAAg                                                                                                                  >  2:859218/1‑135 (MQ=255)                                                                                                                                                                                                                   aTAGTCACTGGCGTCGCCAGCCGCCGCCGGTATAATCGCCGACCCTGCCTGTTCTGTGTGGTTGCACGCTTATGTCCCTGATCCCCGAAATCGACGCCTTTCTTGGCTGCCCGACGCCAGATGCCTGGATCGAAGCGGCGCTCGCCGACCAGGAAACCCTGCTGATCGACCACAAGAACTGCGAGTTCAAGGCCGCCAGCACGGCCTTGAGCCTGATCGCCAAGTACAACACTCAc             >  1:492535/1‑236 (MQ=255)                                                                                                                                                                                                                    tAGTCACTGGCGTCGCCAGCCGCCGCCGGTATAATCGCCGACCCTGCCTGTTCTGTGTGGTTGCACGCTTATGTCCCTGATCCCCGAAATCGACGCCTTTCTTGGCTGCCCGACGCCAGATGCCTGGATCGAAGCGGCGCTCGCCGACCAGGAAACCCTGCTGATCGACCACAAGAACTGCGAGTTCAAGGCCGCCAGCACGGCCTTGAGCCTGATCGCCAAGTACAACACTc               >  2:867035/1‑233 (MQ=255)                                                                                                                                                                                                                       tCACTGGCGTCGCCAGCCGCCGCCGGTATAATCGCCGACCCTGCCTGTTCTGTGTGGTTGCACGCTTATGTCCCTGATCCCCGAAATCGACGCCTTTCTTGGCTGCCCGACGCCAGATGCCTGGATCGAAGCGGCGCTCGCCGACCAGGAAACCCTGCTGATCGACCACAAGAACTGCGAGTTCAAGGCCGCCa                                                   <  2:823273/194‑1 (MQ=255)                                                                                                                                                                                                                           tGGCGTCGCCAGCCGCCGCCGGTATAATCGCCGACCCTGCCTGTTCTGTGTGGTTGCACGCTTATGTCCCTGATCCCCGAAATCGACGCCTTTCTTGGCTGCCCGACGCCAGATGCCTGGATCGAAGCGGCGCTCGCCGACCAGGAAACCCTGCTGATCGACCACAAGAACTGCGAGTTCAAGGCCGCCAGCACGGCCTTGAGCCTGATCGCCAAGTACAACACTCACCTGGATCt     <  1:788843/236‑1 (MQ=255)                                                                                                                                                                                                                              cGTCGCCAGCCGCCGCCGGTATAATCGCCGACCCTGCCTGTTCTGTGTGGTTGCACGCTTATGTCCCTGATCCCCGAAATCGACGCCTTTCTTGGCTGCCCGACGCCAGATGCCTGGATCGAAGCGGCGCTCGCCGACCAGGAAACCCTGCTGATCGACCACAAGAACTGCGAGTTCAAGGCCGCCAGCACGGCCTTGAGCCTGATCGCCAAGTACAACACTCACCTGGATCTg    >  2:404490/1‑234 (MQ=255)                                                                                                                                                                                                                               gTCGCCAGCCGCCGCCGGTATAATCGCCGACCCTGCCTGTTCTGTGTGGTTGCACGCTTATGTCCCTGATCCCCGAAATCGACGCCTTTCTTGGCTGCCcgacgccagtgactatgcttgatgtacatcaagcgctggaggtgaaagcgccgactatagtcaggcactggtcgccatcatcgaagggagtttacgcccatgcaagccgtccgcagcatcctcgtcgtcctcgacc  <  2:563211‑M2/235‑137 (MQ=255)                                                                                                                                                                                                                               gTCGCCAGCCGCCGCCGGTATAATCGCCGACCCTGCCTGTTCTGTGTGGTTGCACGCTTATGTCCCTGATCCCCGAAATCGACGCCTTTCTTGGCTGCCCGACGCCAGATGCCTGGATCGAAGCGGCGCTCg                                                                                                         >  2:197966/1‑132 (MQ=255)                                                                                                                                                                                                                                  gCCAGCCGCCGCCGGTATAATCGCCGACCCTGCCTGTTCTGTGTGGTTGCACGCTTATGTCCCTGATCCCCGAAATCGACGCCTTTCTTGGCTGCCCGACGCCAGATGCCTGGATCGAAGCGGCGCTCg                                                                                                         <  1:113375/129‑1 (MQ=255)                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                        GTTTGTCGCACATCAGCAGGTGCAGGCGCGCGCCGGTGATGCCGGCAATCAGCTTGGCCCGAGTAAGCGCCCGGCTGTGGGCGTGCGCGGGGTCGAGGACGACGAGGATGCTGCGGACGGCTTGCATGGGCGTAAACTCCCTTCGATGATGGCGACCAGTGCCTGACTATAGTCGGCGCTTTCACCTCCAGCGCTTGATGTACATCAAGCATAGTCACTGGCGTCGCCAGCCGCCGCCGGTATAATCGCCGACCCTGCCTGTTCTGTGTGGTTGCACGCTTATGTCCCTGATCCCCGAAATCGACGCCTTTCTTGGCTGCCCGACGCCAGATGCCTGGATCGAAGCGGCGCTCGCCGACCAGGAAACCCTGCTGATCGACCACAAGAACTGCGAGTTCAAGGCCGCCAGCACGGCCTTGAGCCTGATCGCCAAGTACAACACTCACCTGGATCTGAT  >  AE015451/2494511‑2494967

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.