New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3272245	41 (0.820)	5 (0.110)	5/320	NT	11.3%	intergenic (‑161/‑14)	PP_2869/PP_2870	Oxidoreductase, FMN‑binding/putative spermidine/putrescine‑binding periplasmic protein
	?	AE015451	= 3272356	40 (0.840)					coding (98/1044 nt)	PP_2870	putative spermidine/putrescine‑binding periplasmic protein

ACCGGTGGACATGATGCGGTTTTTCAAGCGTTTGCCGCGGATCTGCAAGGGCTCGAACAGGAGTGGGAAGGCGGTCTGCATCAGGCGGCTCCGGTGCGGTGTTGTTATTTTTACTTATAAAAGTGTAGCGATAGTAAAAAATCAACTTGTTTTTTTACTTACGTCTGTCTAGGTTTTCCTCACTCGCATGGCGAGGGTGTGACCTCAGAACAACAAGAAAACGGGCCCGTCGGGCACCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3272004‑3272245 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaccgccaTAACCGACCACGACCATCTGCTGCGCAGCTTGCGCATTGCTCAGGCCAAGGGCCAACAAGGCTGCACAAAGGCCGGTCACACGTGGATATAGCTGCATCGTAGTTTCCTCCTGGCGGTGCCCGACGGGCCCGTTTTCTTGTTGTTCTGAGGTCACACCCTCGCCATGCGAGTGAGGAAAACCTAGACAGACGTAAGTAAAAAAACAAGTTGATTTTTTACTATCGCTACAC  <  AE015451/3272356‑3272126                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ACCGGTGGACATGATGCGGTTTTTCAAGCGTTTGCCGCGGATCTGCAAGGGCTCGAACAGGAGTGGGAAGGCGGTCTGCATCAGGCGGCTCCGGTGCGGTGTTGTTATTTTTACTTATAAAAGTGTAGCGATAGTAAAAAATCAACTTGTTTTTTTACTTACGTCTGTCTAGGTTTTCCTCACTCGCATGGCGAGGGTGTGACCTCAGAACAACAAGAAAACGGGCCCGTCGGGCA                                                                                                                                                                                                                                               >  1:925277/1‑236                           AGCGTTTGCCGCGGATCTGCAAGGGCTCGAACAGGAGTGGGAAGGCGGTCTGCATCAGGCGGCTCCGGTGCGGTGTTGTTATTTTTACTTATAAAAGTGTAGCGATAGTAAAAAATCAACTTGTTTTTTTACTTACGTCTGTCTAGGTTTTCCTCACTCGCATGGCGAGGGTGTGACCTCAGAACAACAAGAAAACGGGCCCGTCGGGCAC                                                                                                                                                                                                                                              >  2:925057/1‑211                                                                                             GGTGCGGTGTTGTTATTTTTACTTATAAAAGTGTAGCGATAGTAAAAAATCAACTTGTTTTTTTACTTACGTCTGTCTAGGTTTTCCTCACTCGCATGGCGAGGGTGTGACCTCAGAACAACAAGAAAACGGGCCCGTCGGGCACCGCCA                                                                                                                                                                                                                                         <  2:436146/150‑1                                                                                                                                                                                     CACTCGCATGGCGAGGGTGTGACCTCAGAACAACAAGAAAACGGGCCCGTCGGGCACCGCCATAACCGACCACGACCATCTGCTGCGCAGCTTGC                                                                                                                                                                                                        >  1:915279/1‑95                                                                                                                                                                                     CACTCGCATGGCGAGGGTGTGACCTCAGAACAACAAGAAAACGGGCCCGTCGGGCACCGCCATAACCGACCACGACCATCTGCTGCGCAGCTTGC                                                                                                                                                                                                        <  2:915276/95‑1                                                                                                                                                                                                       GTGACCTCAGAACAACAAGAAAACGGGCCCGTCGGGCACCGCCATAACCGACCACGACCATCTGCTGCGCAGCTTGCGCATTGCTCAGGCCAAGGGCCAACAAGGCTGCACAAAGGCCGGTCACACGTCGATATAGCTGCATCGTAGTTTCCTCCTG                                                                                                                        >  1:544025/1‑157                                                                                                                                                                                                           CCTCAGAACAACAAGAAAACGGGCCCGTCGGGCACCGCCATAACCGACCACGACCATCTGCTGCGCAGCTTGCGCATTGCTCAGGCCAAGGGCCAACAAGGCTGCACAAAGGCCGGTCACACGTGGATATAGCTGCATCGTAGTTTCCTCCTGGCGGTGCCCGACGGGC                                                                                                        >  1:462381/1‑169                                                                                                                                                                                                                 AACAACAAGAAAACGGGCCCGTCGGGCACCGCCATAACCGACCACGACCATCTGCTGCGCAGCTTGCGCATTGCTCAGGCCAAGGGCCAACAAGGCTGCACAAAGGCCGGTCACACGTGGATATAGCTGCATCGTAGTTTCCTCCTGGCGGTGCCCGACGGGCCCGTTTTCTTGTTGT                                                                                         >  2:364932/1‑178                                                                                                                                                                                                                                           cgCCGCCATAACCGACCACGACCATCTGCTGCGCAGCTTGCGCATTGCTCAGGCCAAGGGCCAACAAGGCTGCACAAAGGCCGGTCACACGTGGATATAGCTGCATCGTAGTTTCCTCCTGGCGGTGCCCGACGGGCCCGTTTTCTTGTTGTTCTGAGGTCACACCCTCGCCATGCGAGTGAGGAAAACCTAGACAGACGTAAGTAAAAAAACAAGT                        <  1:206644/215‑1                                                                                                                                                                                                                                            cCCGCCATAACCGACCACGACCAGCTGCTGCGCAGCTTGCGCATTGCTCAGGCCAAGGGCCAACAAGGCTGCACAAAGGCCGGTCACACGTGGATATAGCTGCATCGTAGTTTCCTCCTGGCGGTGCCCGACGGGCCCGTTTTCTTGTTG                                                                                          <  1:231817/149‑1                                                                                                                                                                                                                                            ACCGCCATAACCGACCACGACCATCTGCTGCGCAGCTTGCGCATTGCTCAGG                                                                                                                                                                                            <  1:315437/52‑1                                                                                                                                                                                                                                             CCGCCATAACCGACCACGACCATCTGCTGCGCAGCTTGCGCATTGCTCAGGCCAAGGGCCAACAAGGCTGCACAAAGGCCGGTCACACGTGGATATAGCTGCATCGTAGTTTCCTCCTGGCGGTGCCCGACGGGCCCGTTTTC                                                                                                <  2:176136/143‑1                                                                                                                                                                                                                                              CGCCATAACCGACCACGACCATCTGCTGCGCAGCTTGCGCATTGCTCAGGCCAAGGGCCAACAAGGCTGCACAAAGGCCGGTCACACGTGGATATAGCTGCATCGTAGTTTCCTCCTGGCGGTGCCCGACGGGCCCGTTTTCTTGTTGTTCTGAGGTCACACCCTCGCCATGCGAGTGAGGAAAACCTAGACAGACGTAAGTAAAAAAACAAGTTGATTTTTTACTATCGCTACAC  >  1:483116/1‑236                                                                                                                                                                                                                                              CGCCATAACCGACCACGACCATCTGCTGCGCAGCTTGCGCATTGCTCAGGCCAAGGGCCAACAAGGCTGCACAAAGGCCGGTCACACGTGGATATAGCTGCATCGTAGTTTCCTCCTGGCGGTGCCCGACGGGCCCGTTTTCTTGTTGTTCTGAGGTCACACCCTCGCCATGCGAGTG                                                            <  1:167879/178‑1                                                                                                                                                                                                                                              CGCCATAACCGACCACGACCATCTGCTGCGCAGCTTGCGCATTGCTCAGGCCAAGGGCCAACAAGGCTGCACAAAGGCCGGTCACACGTGGATATAGCTGCATCGTAGTTTCCTCCTGGCGGTGCCCGACG                                                                                                           <  1:512109/131‑1                                                                                                                                                                                                                                              CGCCATAACCGACCACGACCATCTGCTGCGCAGCTTGCGCATTGCTCAGGCCAAGGGCCAACAAGGCTGCACAAAGGCCGGTCACACGTGGATATAGCAGCATCGTAGTTTCCTCCTGGCGGTGCCCGACG                                                                                                           >  2:512106/1‑131                                                                                                                                                                                                                                               GCCATAACCGACCACGACCATCTGCTGCGCAGCTTGCGCATTGCTCAG                                                                                                                                                                                             <  2:330415/48‑1                                                                                                                                                                                                                                                  ATAACCGACCACGACCATCTGCTGCGCAGCTTGCGCATTGCTCAGGCCAAGGGCCAACAAGGCTGCACAAAGGCCGGTCACACGTGGATATAGCTGCATCGTAGTTTCCTCCTGGCGGTGCCCGACGGGCCCGTTTTCTTGTTGTTCTGAGGTCACACCCTCGCCATGCGAGTGAGGAAAACCTAGACAGACGTAAGTAAAAAAACAAGTTGATTTTTTACTATCGC       >  1:24290/1‑227                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ACCGGTGGACATGATGCGGTTTTTCAAGCGTTTGCCGCGGATCTGCAAGGGCTCGAACAGGAGTGGGAAGGCGGTCTGCATCAGGCGGCTCCGGTGCGGTGTTGTTATTTTTACTTATAAAAGTGTAGCGATAGTAAAAAATCAACTTGTTTTTTTACTTACGTCTGTCTAGGTTTTCCTCACTCGCATGGCGAGGGTGTGACCTCAGAACAACAAGAAAACGGGCCCGTCGGGCACCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3272004‑3272245 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaccgccaTAACCGACCACGACCATCTGCTGCGCAGCTTGCGCATTGCTCAGGCCAAGGGCCAACAAGGCTGCACAAAGGCCGGTCACACGTGGATATAGCTGCATCGTAGTTTCCTCCTGGCGGTGCCCGACGGGCCCGTTTTCTTGTTGTTCTGAGGTCACACCCTCGCCATGCGAGTGAGGAAAACCTAGACAGACGTAAGTAAAAAAACAAGTTGATTTTTTACTATCGCTACAC  <  AE015451/3272356‑3272126

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.