New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4123926 =	53 (1.060)	5 (0.110)	5/316	NT	9.8%	coding (401/1746 nt)	PP_3628	Choline/carnitine/betaine transporter family protein
	?	AE015451	4123974 =	42 (0.900)					coding (449/1746 nt)	PP_3628	Choline/carnitine/betaine transporter family protein

CGGCGGAAGGTGCCGTAGGCGATTACCAGGCCGACGATGGCGTACATGGCCCAAGGGTGCAGGGTCCAATGGAACAAGGTAGTGGCCATTGCCACCTGCATCGCTTCGCTGGTCTGCCCGCTGGCCGAGCCGGGCGGCGGCGATATGTAGTGCGACAGCGGCTCGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4124094‑4123926 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggctcggccaGCGGGCAGACCAGCGAAGCGATGCAGGTGGCAATGGCCACTACCTTGTTCCATTGGACCCTGCACCCTTGGGCCATGTACGCCATCGTCGGCCTGGTAATCGCCTACGGCACCTTCCGCCGTGGCCGCTCGCAGCTGATTTCCGCCGCCTTCCGGCCGCTGATCGGCAAGCACGCAAACGGCCCTCTC  >  AE015451/4123974‑4124161                                                                                                                                                                                                                                                                                                                                                                       CGGCGGAAGGTGCCGTAGGCGATTACCAGGCCGACGATGGCGTACATGGCCCAAGGGTGCAGGGTCCAATGGAACAAGGTAGTGGCCATTGCCACCTGCATCGCTTCGCTGGTCTGCCCGCTGGCCGAGCCGGGCGGCGGCGATATGTAGTGCGACAGCGGCTCGGCCAGCGGGCAGACCA                                                                                                                                                                                  <  2:763848/181‑1                                                                                                       GCTTCGCTGGTCTGCCCGCTGGCGGAGCCGGGCGGCGGCGATATGTAGTGCCACAGCGGCTCGGCCAGCGGGCAGACCAGCGAAGCGATGCAGGTGGCAATGGCCACTACCTTGTTCCATTGGACCCTGCACCCTT                                                                                                                         <  1:288914/136‑1                                                                                                                          TGGCCGAGCCGGGCGGCGGCGATATGTAGCGCGACAGCGGCTCGGCCAGCGGGCAGACCAGCGAAGCGATGCAGGTGGCAATGGCCACTACCTTGTTCCATTGGACCCTGCACCCTTGGGCCATGTACGCCA                                                                                                          <  2:97160/132‑1                                                                                                                                     GGCGGCGGCGATATGTAGTGCGACAGCGGCTCGGCCAGCGGGCAGACCAGCGAAGCGATGCAGGTGGCAAT                                                                                                                                                            <  2:237764/71‑1                                                                                                                                                         CGACAGCGGCTCGGCCAGCGGGCAGACCAGCGAAGC                                                                                                                                                                           <  2:205348/36‑1                                                                                                                                                                    CGGCCAGCGGGCAGACCAGCGAAGCGATGCAGGTGGCAATGGCCACTACCTTGTTCCATTGGACCCTGCACCCTTGGGCCATGTACGCCATCGTCGGCCTGGTAATCGCCTACGGCACCTTCCGCCGTGGCCGCTCGCAGCTGATTTCCGCCGCCTTCCGGCCGCTGATCGGCAAGCACGCAAACGGCCCTCTC  >  1:806881/1‑194                                                                                                                                                                                                                                                                                                                                                                       CGGCGGAAGGTGCCGTAGGCGATTACCAGGCCGACGATGGCGTACATGGCCCAAGGGTGCAGGGTCCAATGGAACAAGGTAGTGGCCATTGCCACCTGCATCGCTTCGCTGGTCTGCCCGCTGGCCGAGCCGGGCGGCGGCGATATGTAGTGCGACAGCGGCTCGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4124094‑4123926 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggctcggccaGCGGGCAGACCAGCGAAGCGATGCAGGTGGCAATGGCCACTACCTTGTTCCATTGGACCCTGCACCCTTGGGCCATGTACGCCATCGTCGGCCTGGTAATCGCCTACGGCACCTTCCGCCGTGGCCGCTCGCAGCTGATTTCCGCCGCCTTCCGGCCGCTGATCGGCAAGCACGCAAACGGCCCTCTC  >  AE015451/4123974‑4124161

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.