New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5638869	44 (0.880)	5 (0.110)	5/316	NT	10.4%	coding (1403/1443 nt)	PP_4949	putative peptidase, TldD/PmbA family
	?	AE015451	= 5639034	45 (0.960)					coding (126/1320 nt)	PP_4950	conserved protein of unknown function

TGGTCCATCGACGATGCGCGCAACAAGTTCCAGTTCGGCTGCGAATGGGGCCAGTTGATTGAAAATGGCGAGCTCAAGGGCATCGTCAAGAACCCCAACTACCGCGGCATCTCCGCGCAGTTCTGGCGCAACCTGTCGGCGGTTGGCGACCACAGTACCTTCCAGGTGCTGGGCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5638631‑5638869 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgccggcctgGCGCACCTTGGCATGGTTGAAACGCACGAACTGCGATTGCTCGGCACTGTAACCGAGGGTGAACTGCTCGCCCGCCTGAAGGGCGGCGTGCACCTCCCCGACCAGGGTTTCGAAAGCGTGCTTCATCAGGCGTCTCCTCCGAATACATCGATCTGGCGGAACACACAGGCCGGCGAGGCGTGGCCGACCCGCACCACCTGATTGGGTTCGCCCTTGCCACAGTTGGGCGTGCCC  <  AE015451/5639034‑5638801                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TGGTCCATCGACGATGCGCGCAACAAGTTCCAGTTCGGCTGCGAATGGGGCCAGTTGATTGAAAATGGCGAGCTCAAGGGCATCGTCAAGAACCCCAACTACCGCGGCATCTCCGCGCAGTTCTGGCGCAACCTGTCGGCGGTTGGCGACCACAGTACCTTCCAGGTGCTGGGCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGC                                                                                                                                                                                                                                               >  1:901452/1‑236      CATCGACGATGCGCGCAACAAGTTCCAGTTCGGCTGCGAATGGGGCCAGTTGATTGAAAATGGCGAGCTCAAGGGCATCGTCAAGAACCCCAACTACCGCGGCATCTCCGCGCAGTTCTGGCGCAACCTGTCGGCGGTTGGCGACCACAGTACCTTCCAGGTGCTGGGCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCG                                                                                                                                                                                                                                                 >  2:400320/1‑229           ACGATGCGCGCAACCAGTTCCAGTTCGGCTGCGAATGGGGCCAGTTGATTGAAAATGGCGAGCTCAAGGGCATCGTCAAGAACCCCAACTACCGCGGCATCTCCGCGCAGTTCTGGCGCAACCTGTCGGCGGTTGGCGACCACAGTACCTTCCAGGTGCTGGGCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGG                                                                                                                                                                                                                                                <  2:544232/225‑1                                                                        GCTCAAGGGCATCGTCAAGAACCCCAACTACCGCGGCATCTCCGCGCAGTTCTGGCGCAACCTGTCGGCGGTTGGCGACCACAGTACCTTCCAGGTGCTGGGCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGGCGCACCTTGGCATGGTTGAAACGCACGAACTGCGATTGCTCGGCACTGTAACCGAGGGTGAACTGC                                                                                                                                                                         <  1:481967/235‑1                                                                          TCAAGGGCATCGTCAAGAACCCCAACTACCGCGGCATCTCCGCGCAGTTCTGGCGCAACCTGTCGGCGGTTGGCGACCACAGTACCTTCCAGGTGCTGGGCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGGCGCACCTTGGCATGGT                                                                                                                                                                                                                           <  1:229652/183‑1                                                                                                                                                                    AGGTGCTGGGCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCC                                                                                                                                                                                                                                                  >  1:331209/1‑70                                                                                                                                                                                                                       GGGTCGGCCACGCCTCGCCGGCCTGGCGCACCTTGGCATGGTTGAAAC                                                                                                                                                                                                                     >  1:837564/1‑48                                                                                                                                                                                                                       GGGTCGGCCACGCCTCGCCGGCCTGGCGCACCTTGGCATGGTTGAAAC                                                                                                                                                                                                                     <  2:837561/48‑1                                                                                                                                                                                                                           CGGCCACGCCTCGCCGGCCTGGCGCACCTTGGCATGGTTGAAACGCACGAACTGCGATTGCTCGGCACTGTAACCGAGGGTGAACTGCTCGCCCGCCTGAAGGGCGGCGTGCACCTCCCCGACCAGGGTTTCGAAAGCGTGCTTCATCAGG                                                                                                          >  1:173950/1‑151                                                                                                                                                                                                                                              TGGCGCACCTTGGCATGGTTGAAACGCACGAACTGCGATTGCTCGGCACTGTAACCGAGGGTGAACTGCTCGCCCGCCTGAAGGGCGGCGTGCACCTCCCCGACCAGGGTTTCGAAAGCGTGCTTCATCAGGCGTCTCCTCCGAATACATCGATCTGGCGGAACACACAGGCCGGCGAGGCGTGGCCGACCCGCACCACCTGATTGGGTTCGCCCTTGCCACAGTTGGGCGTGCCC  <  1:730971/236‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TGGTCCATCGACGATGCGCGCAACAAGTTCCAGTTCGGCTGCGAATGGGGCCAGTTGATTGAAAATGGCGAGCTCAAGGGCATCGTCAAGAACCCCAACTACCGCGGCATCTCCGCGCAGTTCTGGCGCAACCTGTCGGCGGTTGGCGACCACAGTACCTTCCAGGTGCTGGGCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5638631‑5638869 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgccggcctgGCGCACCTTGGCATGGTTGAAACGCACGAACTGCGATTGCTCGGCACTGTAACCGAGGGTGAACTGCTCGCCCGCCTGAAGGGCGGCGTGCACCTCCCCGACCAGGGTTTCGAAAGCGTGCTTCATCAGGCGTCTCCTCCGAATACATCGATCTGGCGGAACACACAGGCCGGCGAGGCGTGGCCGACCCGCACCACCTGATTGGGTTCGCCCTTGCCACAGTTGGGCGTGCCC  <  AE015451/5639034‑5638801

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.