New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5638869	44 (0.880)	5 (0.110)	5/316	NT	10.4%	coding (1403/1443 nt)	PP_4949	putative peptidase, TldD/PmbA family
	?	AE015451	= 5639034	45 (0.960)					coding (126/1320 nt)	PP_4950	conserved protein of unknown function

CGCAACAAGTTCCAGTTCGGCTGCGAATGGGGCCAGTTGATTGAAAATGGCGAGCTCAAGGGCATCGTCAAGAACCCCAACTACCGCGGCATCTCCGCGCAGTTCTGGCGCAACCTGTCGGCGGTTGGCGACCACAGTACCTTCCAGGTGCTGGGCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCAGTTCACCCTCGGTTACAGTGCCGAGCAATCGCAGTTCGTGCGTTTCAACCATGCCAAGGTGCGCCAGGCCGGCGAAGTCAGCCAGGCCAGCGCGCAACTGCGGCTGGTGCGCGATGGGCGCCAGGCGGAACAG  >  AE015451/5638649‑5639103                                                                                                                                                                                                                             |                                                                                                                                                                                                                                           cgcAACAAGTTCCAGTTCGGCTGCGAATGGGGCCAGTTGATTGAAAATGGCGAGCTCAAGGGCATCGTCAAGAACCCCAACTACCGCGGCATCTCCGCGCAGTTCTGGCGCAACCTGTCGGCGGTTGGCGACCACAGTACCTTCCAGGTGCTGGGCACGTCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGAt                                                                                                                                                                                                                             >  1:363033/1‑236 (MQ=255)          ttCCAGTTCGGCTGCGAATGGGGCCAGTTGATTGAAAATGGCGAGCTCAAGGGCATCGTCAAGAACCCCAACTACCGCGGCATCTCCGCGCAGTTCTGGCGCAACCTGTCGGCGGTTGGCGACCACAGTACCTTCCAGGTGCTGGGCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATc                                                                                                                                                                                                                            <  1:320790/228‑1 (MQ=255)           tCCAGTTCGGCTGCGAATGGGGCCAGTTGATTGAAAATGGCGAGCTCAAGGGCATCGTCAAGAACCCCAACTACCGCGGCATCTCCGCGCAGTTCTGGCGCAACCTGTCGGCGGTTGGCGACCACAGTACCTTCCAGGTGCTGGGCACGTCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATc                                                                                                                                                                                                                            <  2:363030/227‑1 (MQ=255)                     cTGCGAATGGGGCCAGTTGATTGAAAATGGCGAGCTCAAGGGCATCGTCAAGAACCCCAACTACCGCGGCATCTCCGCGCAGTTCTGGCGCAACCTGTCGGCGGTTGGCGACCACAGTACCTTCCAGGTGCTGGGCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGAc                                                                                                                                                                                                          >  1:498042/1‑235 (MQ=255)                                                      gCTCAAGGGCATCGTCAAGAACCCCAACTACCGCGGCATCTCCGCGCAGTTCTGGCGCAACCTGTCGGCGGTTGGCGACCACAGTACCTTCCAGGTGCTGGGCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGgcgcaccttggcatggttgaaacgcacgaactgcgattgctcggcactgtaaccgagggtgaactgc                                                                                                                                                                         <  1:481967‑M1/235‑68 (MQ=255)                                                        tCAAGGGCATCGTCAAGAACCCCAACTACCGCGGCATCTCCGCGCAGTTCTGGCGCAACCTGTCGGCGGTTGGCGACCACAGTACCTTCCAGGTGCTGGGCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGgcgcaccttggcatggt                                                                                                                                                                                                                           <  1:229652‑M1/183‑18 (MQ=255)                                                          aaGGGCATCGTCAAGAACCCCAACTACCGCGGCATCTCCGCGCAGTTCTGGCGCAACCTGTCGGCGGTTGGCGACCACAGTACCTTCCAGGTGCTGGGCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAg                                                                                                                                                                    >  1:5635/1‑236 (MQ=255)                                                                aTCGTCAAGAACCCCAACTACCGCGGCATCTCCGCGCAGTTCTGGCGCAACCTGTCGGCGGTTGGCGACCACAGTACCTTCCAGGTGCTGGGCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCa                                                                                                                                                               <  1:703451/235‑1 (MQ=255)                                                                   gTCAAGAACCCCAACTACCGCGGCATCTCCGCGCAGTTCTGGCGCAACCTGTCGGCGGTTGGCGACCACAGTACCTTCCAGGTGCTGGGCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTTGGGGAGGTGCa                                                                                                                                                               <  2:332938/232‑1 (MQ=255)                                                                     cAAGAACCCCAACTACCGCGGCATCTCCGCGCAGTTCTGGCGCAACCTGTCGGCGGTTGGCGACCACAGTACCTTCCAGGTGCTGGGCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCa                                                                                                                                                               >  2:370203/1‑230 (MQ=255)                                                                                 cTACCGCGGCATCTCCGCGCAGTTCTGGCGCAACCTGTCGGCGGTTGGCGACCACAGTACCTTCCAGGTGCTGGGCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCtga                                                                                                                                                                                                    >  1:810833/1‑181 (MQ=255)                                                                                  tcccGCGGCATCTCCGCGCAGTTCTGGCGCAACCTGTCGGCGGTTGGCGACCACAGTACCTTCCAGGTGCTGGGCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCa                                                                                                                                                                                             <  2:229125/185‑1 (MQ=255)                                                                                     cgcgGCATCTCCGCGCAGTTCTGGCGCAACCTGTCGGCGGTTGGCGACCACAGTACCTTCCAGGTGCTGTGCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTgg                                                                                                                                                                            <  1:302895/201‑1 (MQ=255)                                                                                              tcCGCGCAGTTCTGGCGCAACCTGTCGGCGGTTGGCGACCACAGTACCTTCCAGGTGCTGGGCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCAGTTCAcc                                                                                                                                <  1:435516/236‑1 (MQ=255)                                                                                              tcCGCGCAGTTCTGGCGCAACCTGTCGGCGGTTGGCGACCACAGTACCTTCCAGGTGCTGGGCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCAGTTCAcc                                                                                                                                <  1:400323/236‑1 (MQ=255)                                                                                               ccGCGCAGTTCTGGCGCAACCTGTCGGCGGTTGGCGACCACAGTACCTTCCAGGTGCTGGGCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAggcgggc                                                                                                                                            <  1:745912/223‑1 (MQ=255)                                                                                                         cTGGCGCACCCGGTCGGCGGTTGGCGACCACAGTACCTTCCAGGTGCTGGGCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGa                                                                                                                                                                                                                              <  2:169345/131‑1 (MQ=255)                                                                                                          tGGCGCAACCTGTCGGCGGTTGGCGACCACAGTACCTTCCAGGTGCTGGGCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCAGTTCACCCTCGGTTACAGt                                                                                                                    >  1:78529/1‑236 (MQ=255)                                                                                                                    tGTCGGCGGTTGGCGACCACAGTACCTTCCAGGTGCTGGGCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCAGTTCAcg                                                                                                                                >  2:495527/1‑213 (MQ=255)                                                                                                                      tCGGCGGTTGGCGACCACAGTACCTTCCAGGTGCTGGGCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCAGTTCACCCTCGGTTACAGTGCCGAGCaa                                                                                                           <  2:5635/233‑1 (MQ=255)                                                                                                                          cggTTGGCGACCACAGTACCTTCCAGGTGCTGGGCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCAGTTCACCCTCGGTTACAGTGCCGAGCAATCGCAGt                                                                                                    <  1:638564/236‑1 (MQ=255)                                                                                                                            gTTGGCGACCCCAGTACCTTCCAGGTGCTGGGCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCAGTTCACCCTCGGTTACAGTGCCGAGCAATCGCAGt                                                                                                    <  1:408650/234‑1 (MQ=255)                                                                                                                            gTTGGCGACCACAGTACCTTCCAGGTGCTGGGCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCAGTTCACCCTCGGTTACAGTGCCGAGCAATCGCAGt                                                                                                    <  2:743086/234‑1 (MQ=255)                                                                                                                                 cGACCACAGTACCTTCCAGGTGCTGGGCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCAGt                                                                                                                                     <  1:861113/196‑1 (MQ=255)                                                                                                                                           gccTTCCAGGTGCTGGGCACGCCCAACGGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCa                                                                                                                                       <  2:180711/183‑1 (MQ=255)                                                                                                                                                  aGGTGCTGGGCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGGGTGGTCCGc                                                                                                                                                                                                                                  >  2:724330/1‑86 (MQ=255)                                                                                                                                                    gTGCTGGGCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTCTCGa                                                                                                                                                                                    >  2:282026/1‑130 (MQ=255)                                                                                                                                                       cTGGGCCCGCCCAACTGTGGCACGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACCCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTCTTCgg                                                                                                                                                                                                                 >  2:49649/1‑98 (MQ=255)                                                                                                                                                         gggCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCAGTTCACCCTCGGTTACAGTGCCGAGCAATCGCAGTTCGTGCGTTTCAACCATGCCAAGGTgcgc                                                                       >  1:570919/1‑234 (MQ=255)                                                                                                                                                         gggCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCAGTTCACCCTCGGTTACAGTGCCGAGCAATCGCAGTTCGTGCGTTTCAACCATGCCAAGGTGCGCca                                                                     <  1:730971‑M2/236‑3 (MQ=255)                                                                                                                                                          ggCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGACGCACGCTTTCGAAACCCTGGTCg                                                                                                                                                                         >  2:708139/1‑135 (MQ=255)                                                                                                                                                             aCGCCCAACTGTTGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCAGt                                                                                                                                     <  2:566696/168‑1 (MQ=255)                                                                                                                                                             aCGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCAGTTCACCCTCGGTTACAGTGCCGAGCAATCGCAGTTCGTGCGTTTCAACCATGcc                                                                                >  2:356476/1‑221 (MQ=255)                                                                                                                                                                cccAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCAGTTCACCCTCGGTTACAGTGCCGAGCAATCGCAGTTCGTGCGTTTCa                                                                                        <  2:662891/210‑1 (MQ=255)                                                                                                                                                                     cTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCAGTTCACCCTCGGTTACAGTGCCGAGCAATCGCAGTTCGTGCGTTTCAACCATGCCAAGGTGCGCCAGGCCGGCGAAGt                                                         <  1:401141/236‑1 (MQ=255)                                                                                                                                                                               ggCGAACCAAGTCAGGGGGTGCGGGTCGGCGACGCCTCGCCGGCCTGTGTGTTGCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCa                                                                                                                                                                                             <  2:89267/94‑1 (MQ=255)                                                                                                                                                                                gCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCAGTTCACCCTCGGTTACAGTGCCGAGCAATCGCAGGTCGTGCGTTTCAACCATGCCAAGGTGCGCCCGGCCGGCGAAGTCAgccaggcca                                              >  1:202373/1‑236 (MQ=255)                                                                                                                                                                                  gAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCCCGCCGCCCTTCAGGCGGGCGAGCAGt                                                                                                                                     >  2:235119/1‑147 (MQ=255)                                                                                                                                                                                         aTCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCAGTTCACCCTCGGTTACAGTGCCGAGCAATCGCAGTTCGTGCGTTTCAACCATGCCAAGGTGCGCCAGGCCGGCGAAGTCAgccagg                                                 <  1:378341/224‑1 (MQ=255)                                                                                                                                                                                             ggtggtGCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCAGTTCACCCTCGGTTACAGTGCCGAGCAATCGCAGTTCGTGCGTTTCAACCATGCCAAGGTGCGCCAGGCCGGCGaa                                                           >  2:719342/1‑210 (MQ=255)                                                                                                                                                                                                 gtgCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCAGTTCACCCTCGGTTACAGTGCCGAGCAATCGCAGTTCGTGCGTTTCAACCATGCCAAGGTGCGCCAGGCCGGCGAAGTCAgccaggccag                                             >  1:630743/1‑220 (MQ=255)                                                                                                                                                                                                     gggTCGGCCACGCCTCGCCGGCCTGgcgcaccttggcatggttgaaac                                                                                                                                                                                                                     >  1:837564‑M1/1‑25 (MQ=255)                                                                                                                                                                                                     gggTCGGCCACGCCTCGCCGGCCTGgcgcaccttggcatggttgaaac                                                                                                                                                                                                                     <  2:837561‑M1/48‑24 (MQ=255)                                                                                                                                                                                                      ggTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGTGAGCAGTTCACCCTCGGTTACAGTGcc                                                                                                                 <  2:331206/147‑1 (MQ=255)                                                                                                                                                                                                         cGGCCACGCCTCGCCGGCCTGgcgcaccttggcatggttgaaacgcacgaactgcgattgctcggcactgtaaccgagggtgaactgctcgcccgcctgaagggcggcgtgcacctccccgaccagggtttcgaaagcgtgcttcatcagg                                                                                                          >  1:173950‑M1/1‑21 (MQ=255)                                                                                                                                                                                                             cACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCAGTTCACCCTCGGTTACAGTGCCGAGCAATCGCAGTTCGTGCGttt                                                                                          <  2:351316/163‑1 (MQ=255)                                                                                                                                                                                                               cGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCAGTTCACCCTCGGTTACAGTGCCGAGCAATCGCAGTTCGTGCGTTTCAACCATGCCAAGGTGCGCCAGGCCGGCGAAGTCAGCCAGGCCAGCGCGCAACTGCGGCt                              >  2:450926/1‑221 (MQ=255)                                                                                                                                                                                                               cGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCAGCTCACCCTCGGTTACAGCGCCGCGCAATCGCa                                                                                                      >  2:161088/1‑149 (MQ=255)                                                                                                                                                                                                                gCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAGACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCAGTTCACCCTCGGTTACAGTGCCGCGCAATCGCAGTTCGTGCGTTTCa                                                                                        <  2:20881/162‑1 (MQ=255)                                                                                                                                                                                                                      ccGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCAGTTCACCCTCg                                                                                                                            <  1:157735/120‑1 (MQ=255)                                                                                                                                                                                                                            tGgcgcaccttggcatggttgaaacgcacgaactgcgattgctcggcactgtaaccgagggtgaactgctcgcccgcctgaagggcggcgtgcacctccccgaccagggtttcgaaagcgtgcttcatcaggcgtctcctccgaatacatcgatctggcggaacacacaggccggcgaggcgtggccgacccgcaccacctgattgggttcgcccttgccacagttgggcgtgccc  <  1:730971‑M1/236‑235 (MQ=255)                                                                                                                                                                                                                             |                                                                                                                                                                                                                                           CGCAACAAGTTCCAGTTCGGCTGCGAATGGGGCCAGTTGATTGAAAATGGCGAGCTCAAGGGCATCGTCAAGAACCCCAACTACCGCGGCATCTCCGCGCAGTTCTGGCGCAACCTGTCGGCGGTTGGCGACCACAGTACCTTCCAGGTGCTGGGCACGCCCAACTGTGGCAAGGGCGAACCCAATCAGGTGGTGCGGGTCGGCCACGCCTCGCCGGCCTGTGTGTTCCGCCAGATCGATGTATTCGGAGGAGACGCCTGATGAAGCACGCTTTCGAAACCCTGGTCGGGGAGGTGCACGCCGCCCTTCAGGCGGGCGAGCAGTTCACCCTCGGTTACAGTGCCGAGCAATCGCAGTTCGTGCGTTTCAACCATGCCAAGGTGCGCCAGGCCGGCGAAGTCAGCCAGGCCAGCGCGCAACTGCGGCTGGTGCGCGATGGGCGCCAGGCGGAACAG  >  AE015451/5638649‑5639103

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.