New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	6131444 =	57 (1.140)	4 (0.080)	4/326	NT	7.4%	coding (78/1080 nt)	copB‑II	copper resistance protein B
	?	AE015451	6131466 =	45 (0.930)					coding (56/1080 nt)	copB‑II	copper resistance protein B

ATGACTCGATGAAGGGTATGGATCATGGCTCCATGAAGGGTATGGACCACGACAGCATGAAAGGTATGGACCATGGCTCGATGGAAGGTATGGATCACAGCAAAATGATGGAATCGCATGGCAGCGATAAAGCTAAGGCAGGGAAAGATGACCAATAGCCTGGCACGACCATCGCTGCTGGCATTGACCGTTTCATTCAGCATGCTGGGTGCTGCTGCGCCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/6131668‑6131444 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccagcATGCTGAATGAAACGGTCAATGCCAGCAGCGATGGTCGTGCCAGGCTATTGGTCATCTTTCCCTGCCTTAGCTTTATCGCTGCCATGCGATTCCATCATTTTGCTGTGATCCATACCTTCCATCGAGCCATGGTCCATACCTTTCATGCTGTCGTGGTCCATACCCTTCATGGAGCCAT  >  AE015451/6131466‑6131644                                                                                                                                                                                                                                                                                                                                                                                                                      ATGACTCGATGAAGGGTATGGATCATGGCTCCATGAAGGGTATGGACCACGACAGCATGAAAGGTATGGACCATGGCTCGATGGAAGGTATGGATCACAGCAAAATGATGGAATCGCATGGCAGCGATAAAGCTAAGGCAGGGAAAGATGACCAATAGCCTGGCACGACCATCGCTGCTGGCATTGACCGTTTCATTCAGCATGCTGGGTGCTGCTGCGCCCAGCATGCTGAAT                                                                                                                                                                            <  1:256096/234‑1      TCGATGAAGGGTATGGATCATGGCTCCATGAAGGGTATGGACCACGACAGCATGAAAGGTATGGACCATGGCTCGATGGAAGGTATGGATCACAGCAAAATGATGGAATCGCATGGCAGCGATAAAGCTAAGGCAGGGAAAGATGACCAATAGCCTGGCACGACCATCGCTGCTGGCATTGACCGTTTCATTCAGCATGCTGGGTGCTGCTGCGCC                                                                                                                                                                                         >  1:615261/1‑216      TCGATGAAGGGTATGGATCATGGCTCCATGAAGGGTATGGACCACGACAGCATGAAAGGTATGGACCATGGCTCGATGGAAGGTATGGATCACAGCAAAATGATGGAATCGCATGGCAGCGATAAAGCTAAGGCAGGGAAAGATGACCAATAGCCTGGCACGACCATCGCTGCTGGCATTGACCGTTTCATTCAGCATGCTGGGTGCTGCTGCGCC                                                                                                                                                                                         <  2:615258/216‑1                                                           GAAAGGTATGGACCATGGCTCGATGGAAGGTATGGATCACAGCAAAATGATGGAATCGCATGGCAGCGATAAAGCTAAGGCAGGGAAAGATGACCAATAGCCTGGCACGACCAACGCTGCTGGCATTGACCGTTTCATTCAGCATGCGGGGAGCTGCTTCGCCCAGC                                                                                                                                                                                     >  2:208806/1‑167                                                                             CTCGATGGAAGGTATGGATCACAGCAAAATGATGGAATCGCATGGCAGCGATAAAGCTAAGGCAGGGAAAGATGACCAATAGCCTGGCACGACCATCGCTGCTGGCATTGACCGTTTCATTCAGCATGCTGGGTGCTGCTGCGCCCAGCATGCTGAATGAAACGGTCAATGCCAGCAGCGATGGTCGTGCCAGGCTATTGGTCATCTTTCCCTGCCTTAGCTTTATCctgtct                                                                                                 >  1:507698/1‑227                                                                                  TGGAAGGTATGGATCACAGCTAAATGATGGAATCGCATGGCAGCGATAAAGCTAAGGCAGGGAAAGATGACCAATAGCCTGGCACGACCATCGCTGCTGGCATTGACCGTTTCATTCAGCATGCTGGGTGCTGCTGCGCCCAGCATGCTGAATGAAACGGTCAATGCCAGCAGCGATGGTCGTGCCAGGCTATTGGTCATCTTTCCCT                                                                                                                     <  2:507695/208‑1                                                                                     AAGGTATGGATCACAGCAAAATGATGGAAGCGCATGGCAGCGATAAAGCTAAGGCAGGGAAAGATGACCAATAGCCTGGCACGACCATCGCTGCTGGCATTGACCGTTTCATTCAGCATGCTGGGTGCTGCTGCGCCCAGCATGCTGAATGAAACGGTCAATGCCAGCAGCGATGGTCGTGCCAGGCTATTGGTCATCTT                                                                                                                          <  1:400272/200‑1                                                                                                                                                                                                                                 CATGCTGAATGAAACGGTCAATGCCAGCAGCGATGGTCGTGCCAGGCTATTGGTCATCTTTCCCTGGCTTAGCTTTATCGCTGCCATGCGATTCCATCATTTTGCTGTGATCCATACCTTCCATCGAGCCATGGTCCATACCTTTCATGCTGTCGTGGTCCATACCCTTCATGGAGCCAT  <  2:667758/180‑1                                                                                                                                                                                                                                                                                                                                                                                                                      ATGACTCGATGAAGGGTATGGATCATGGCTCCATGAAGGGTATGGACCACGACAGCATGAAAGGTATGGACCATGGCTCGATGGAAGGTATGGATCACAGCAAAATGATGGAATCGCATGGCAGCGATAAAGCTAAGGCAGGGAAAGATGACCAATAGCCTGGCACGACCATCGCTGCTGGCATTGACCGTTTCATTCAGCATGCTGGGTGCTGCTGCGCCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/6131668‑6131444 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccagcATGCTGAATGAAACGGTCAATGCCAGCAGCGATGGTCGTGCCAGGCTATTGGTCATCTTTCCCTGCCTTAGCTTTATCGCTGCCATGCGATTCCATCATTTTGCTGTGATCCATACCTTCCATCGAGCCATGGTCCATACCTTTCATGCTGTCGTGGTCCATACCCTTCATGGAGCCAT  >  AE015451/6131466‑6131644

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.