New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2571158 =	38 (0.760)	4 (0.080)	4/322	NT	10.2%	coding (1279/1311 nt)	dctA‑III	C4‑dicarboxylate transport protein
	?	AE015451	2571261 =	34 (0.710)					coding (1176/1311 nt)	dctA‑III	C4‑dicarboxylate transport protein

CACCACTGAGTTGACGACGGTTGATGAGCTGATCACGGTTCGCTCCTGGAAGGGCCGGCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGTTGCTTGCGTGGCGTGGGGGCAAAGCCAGGCTTGCCGTCGAGCACGTTCTGCGCACGTTCCAGGTCAATGTCCTTCTCCCAACGGGCAATGGCCACGGTGGCCACGCAGTTGCCGATCAGGTTGGTCAACGCCCGGCCGATACCCATGAACCAGTCCACCGCCAGCACCAGTACCAGGCCAACCACAGGGATCGCCGGTACCGCAGTCAGGGTGGCGGCAAGAATCACCAGTGCCGAGCCTGGGATGCCGTGAGCCCCCTTGGAAGTCACCAGCGACACCAGCAGGATGGTCAGCAGGTCGGTCATTTCCAGTGGCGTG  >  AE015451/2571047‑2571471                                                                                                                                                                                                                       |                                                                                                                                                                                                                   caccacTGAGTTGACGACGGTTGATGAGCTGATCACGGTTCGCTCCTGGAAGGGCCGGCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGTTGCTTGCGTGGCGTGGGGGCAAAGCCAGGCTTGCCGTCGAGCACGTTCTGCGCACGTTCCAGGTCAATGTCCTTCTCCCAACGGGCAATGGCCACGGTGGCCACGCAGTTGCCGTTCAGGTTGGTCaa                                                                                                                                                                                                <  1:896128/235‑1 (MQ=255)                 acgGTTGATGAGCTGATCACGGTTCGCTCCTGGAAGGGCCGGCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGTTGCTTGCGTGGCGTGGGGGCAAAGCCAGGCTTGCCGTCGAGCACGTTCTGCGCACGTTCCAGGTCAATGTCCTTCTCCCAACGGGCAATGGCCACGGTGGCCACGCAGTTGCCGATCAGGTTGGTCAACGCCCGGCCGATAccc                                                                                                                                                                                >  1:445492/1‑235 (MQ=255)                      tgatgaGCTGATCACGGTTCGCTCCTGGAAGGGCCGGCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGTTGCTTGCGTGGCGTGGGGGCAAAGCCAGGCTTGCCGTCGAGCACGTTCTGCGCACGTTCCAGGGCAATGTCCTTCTCCCAACGGGCAATGGCCACGGTGGCCACGCAGTTGCCg                                                                                                                                                                                                              >  1:291066/1‑200 (MQ=255)                         tgaGCTGATCACGGTTCGCTCCTGGAAGGGCCGGCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGTTGCTTGCGTGGCGTGGGGGCAAAGCCAGGCTTGCCGTCGAGCACGTTCTGCGCACGTTCCAGGTCAATGTCCTTCTCCCAACGGGCAATGGCCACGGTGGCCACGCAGTTGCCGATCAGGTTGGTCAACGCCCGGCCGATACCCATGAACCAg                                                                                                                                                                       <  1:575198/236‑1 (MQ=255)                           aGCTGATCACGGTTCGCTCCTGGAAGGGCCGGCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGTTGCTTGCGTGGCGTGGGGGCAAAGCCAGGCTTGCCGTCGAGCACGTTCTGCGCACGTTCCAGGTCAATGTCCTTCTCCCAACGGGCAATGGCCACGGTGGCCACGCAGTTGCCGATCAGGTTGGTCAAc                                                                                                                                                                                               <  2:739384/210‑1 (MQ=255)                                           cTCCTGGAAGGGCCGGCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGTTGCTTGCGTGGCGTGGGGGCAAAGCCAGGCTTGCCGTCGAGCACGTTCTGCGCACGTTCCAGGTCAATGTCCTTCTCCCAACGGGCAATGGCCACGGTGGCCACGCAGTTGCCGATCAGGTTGGTCAACGCCCGGcc                                                                                                                                                                                       >  2:771986/1‑202 (MQ=255)                                               tGGAAGGGCCGGCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGTTGCTTGCGTGGCGTGGGGGCAAAGCCAGGCTTGCCGTCGAGCACGTTCTGCGCACGTTCCAGGTCAATGTCCTTCTCCCAACGGGCAATGGCCACGGTGGCCACGCAGTTGCCGATCAGGTTGGTCAACGCCCGGCCGATACCCATGAACCAGTCCACCGCCAGCACCAGTAcc                                                                                                                                                  >  1:516608/1‑235 (MQ=255)                                                 gAAGGGCCGGCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGTTGCTTGCGTGGCGTGGGGGCAAAGCCAGGCTTGCCGTCGAGCACGTTCTGCGCACGTTCCAGGTCAATGTCCTTCTCCCAACGGGCAATGGCCACGGTGGCCACGCAGTTGCCGATCAGGTTGGTCAACGCCCGGCCGATACCCATGAACCAGTCCACCGCCAGCACCAGTACCAg                                                                                                                                                <  1:456497/235‑1 (MQ=255)                                                     ggCCGGCGTCGTGCCGGCCACGTTCGATCAGAATCCCTGTTGATGGGCGCTGGGTTGCTTGCGTGGCGTGGGGGCAAAGCCAGGCTTGCCGTCGAGCACGTTCTGCGCACGTTCCAGGTCAATGTCCTTCTCCCAACGGGCAATGGCCACGGTGGCCACGCAGTTGCCGATCAGGTTGGTCAACGCCCGGcc                                                                                                                                                                                       <  2:278516/192‑1 (MQ=255)                                                        cGGCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGTTGCTTGCGTGGCGTGGGGGCAAAGCCAGGCTTGCCGTCGAGCACGTTCTGCGCACGTTCCAGGTCAATGTCCTTCTCCCAACGGGCAATGGCCACGGTGGCCACGCAGTTGCCGATCAGGTTGGTCAACGCCCGGCCGATACCCATGAACCAGTCCACCGCCAGCACCAGTAccctggctctta                                                                                                                                        >  1:239004/1‑226 (MQ=255)                                                         ggCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGTTGCTTGCGTGGCGTGGGGGCAAAGCCAGGCTTGCCGTCGAGCACGTTCTGCGCACGTTCCAGGTCAATGTCCTTCTCCCAACGGGCAATGGCCACGGTGGCCACGCAGTTGCCGATCAGGTTg                                                                                                                                                                                                     >  2:106710/1‑174 (MQ=255)                                                         ggCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGTTGCTTGCGTGGCGTGGGGGCAAAGCCAGGCTTGCCGTCGAGCACGTTCTGCGCACGTTCCAGGTCAATGTCCTTCTCCCAACGGGCAATGGCCACGGTGGCCACGCAGTTGCCGATCAGGTTGGGCAACGCCCGGCCGATACCCATGAACCAGTCCACCGCCAGCACCAGTACCAGGCCAAAca                                                                                                                                        >  1:6713/1‑235 (MQ=255)                                                              cATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGTTGCTTGCGTGGCGTGGGGGCAAAGCCAGGCTTGCCGTCGAGCACGTTCTGCGCACGTTCCAGGTCAATGTCCTTCTCCCAACGGGCAATGGCCACGGTGGCCACGCAGTTGCCGATCAGGTTGGTCAACGCCCGGCCGATACCCATGAACCAGTCCACCGCCAGCACCAGTACCAGGCCAACCACAggg                                                                                                                                   <  1:317911/235‑1 (MQ=255)                                                                               cTCAGAATTCCTGTTGATGGGCGCTGGGTTGCTTGCGTGGCGTGGGGGCAAAGCCAGGCTTGCCGTCGAGCACGTTCTGCGCACGTTCCAGGTCAATGTCCTTCTCCCAACGGGCAATGGCCACGGTGGCCACGCAGTTGCCGATCAGGTTGGTCAACGCCCGGCCGATACCCATGAACCAGTCCACCGCCAGCACCAGTACCAGGCCAACCACAGGGATCGCCGGTACCGCAg                                                                                                                   <  1:847618/234‑1 (MQ=255)                                                                                     aTTCCTGTTGAGGGGCGCTGGGTTGCTTGCGTGGCGTGGGGGCAAAGCCAGGCTTGCCGTCGAGCACGTTCTGCGCACGTTCCAGGTCAATGTCCTTCTCCCAACGGGCAATGGCCACGGTGGCCACGCAGTTGCCGATCAGGTTGGTCAACGCCCGGcc                                                                                                                                                                                       <  2:35025/160‑1 (MQ=255)                                                                                                tGGGCGCTGGGTTGCTTGCGTGGCGTGGGGGCAAAGCCAGGCTTGCCGTCGAGCACGTTCTGCGCACGTTCCAGGTCAATGTCCTTCTCCCAACGGGCAATGGCCACGGTGGCCACGCAGTTGCCGATCAGGTTGGTCAACGCCCGGCCGATACCCATGAACCAGTCCACCGCCAGCACCAGTACCAGGCCAACCACAGGGATCGCCGGTACCGCAGTCAGGGTGGCGGCAAGAAt                                                                                                >  1:75826/1‑236 (MQ=255)                                                                                                         ggTTGCTTGCGCGGCGTGGGGGCAAAGCCAGGCTTGCCGTCGAGCACGTTCTGCGCACGTTCCAGTTCAATGTCCTTCTCCCAACGGGCAATGGCCACGGTGGCCCCGCAGTTGCCGATCAGGTTGGTCAACGCCCGGCCGATACCCATGAACCAGTCCACCGCCAGCACCAGTACCAGGCCAACCACAGGGATCGCCGGTACCGCAGTCAGGGTGGCGGCAAGAATCACCAGt                                                                                         <  1:287259/234‑1 (MQ=255)                                                                                                                 GCGTGGCGTGGGGGCAAAGCCAGGCTTGCCGTCGAGCACGTTCTGCGCACGTTCCAGGTCAATGTCCTTCTCCCAACGGGCAATGGCCACGGTGGCCACGCAGTTGCCGATCAGGTTGGTCAACGCCCGGCCGATACCCATGAACCAGTCCACCGCCAGc                                                                                                                                                           >  2:377680‑M1/1‑160 (MQ=255)                                                                                                                     GGCGTGGGGGCAAAGCCAGGCTTGCCGTCGAGCACGTTCTGCGCACGTTCCAGGTCAATGTCCTTCTCCCAACGGGCAATGGCCACGGTGGCCACGCAGTTGCCGATCAGGTTGGTCAACGCCCGGCCGATACCCATGAACCAGTCCACCGCCAGCACCAGTACCAGGCCAACCACAGGGATCGCCGGTACCGCAGTCAGGGTggcg                                                                                                        >  1:83764‑M1/1‑207 (MQ=255)                                                                                                                         tggGGGCAAAGCCAGGCTTGCCGTCGAGCACGTTCTGCGCGCGTTCCAGGTCAATGTCCTTCTCCCAACGGGCAATGGCCACGGTGGCCACGCAGTTGCCGATCAGGTTGGTCAACGCCCGGCCGATACCCATGACCCAGTCCACCGCCAGCACCAGTACCAGGCCAACcaca                                                                                                                                      <  1:148251/173‑1 (MQ=255)                                                                                                                           ggggCAAAGCCAGGCTTGCCGTCGAGCACGTTCTGCGCACGTTCCAGGTCAATGTCCTTCTCCCAACGGGCAATGGCCACGGTGGCCACGCAGTTGCCGATCAGGTTGGTCAACGCCCGGCCGATACCCATGAACCAGTCCACCGCCAGCACCAGTACCAGGCCAACCACAGGGATCGCCGGTACCGCAGTCAGGGTGGCGGCAAGAATCACCAGTGCCGAGCCTGGGATGCCGTg                                                                     <  1:836613/236‑1 (MQ=255)                                                                                                                               cAAAGCCAGGCTTGCCGTCGAGCACGTTCTGCGCACGTTCCAGGTCAATGTCCTTCTCCCAACGGGCAATGGCCACGGTGGCCACGCAGTTGCCGATCAGGTTGGTCAACGCCCGGCCGATACCCATGAACCAGTCCACCGCCAGCACCAGTACCAg                                                                                                                                                <  1:841866/157‑1 (MQ=255)                                                                                                                               cAAAGCCAGGCTTGCCGTCGAGCACGTTCTGCGCACGTTCCAGGTCAATGTCCTTCTCCCAACGGGCAATGGCCACGGTGGCCACGCAGTTGCCGATCAGGTTGGTCAACGCCCGGCCGATACCCATGAACCAGTCCACCGCCAGCACCAGTACCAg                                                                                                                                                >  2:841863/1‑157 (MQ=255)                                                                                                                                aaaGCCAGGCTTGCCGTCGAGCACGTTCTGCGCACGTTCCAGGTCAATGTCCTTCTCCCAACGGGCAATGGCCACGGTGGCCACGCAGTTGCCGATCAGGTTGGTCAACGCCCGGCCGATACCCATGAACCAGTCCACCGCCAGCACCAGTACCAGGCCAACCACAGGGATCGCCGGTACCGCAGTCAGGGTGGCGGCAAGAATCACCAGTGCCGAGCCTGGGATGCCGTGAGccc                                                                <  1:64251/236‑1 (MQ=255)                                                                                                                                        gCTGGCCGTCGAGCATGTTCTGCGCACGTTCCAGGTCAATGTCCTTCTCCCAACGGGCAATGGCCACGGTGGCCACGCAGTTGCCGATCAGGTTGGTCAACGCCCGGCCGATACCCATGAACCAGTCCACCGCCAGCACCAGTACCAGGCCAACCACAGGGATCGCCgg                                                                                                                           <  2:693399/169‑1 (MQ=255)                                                                                                                                                 aaggacattgacctggaacgtgcgcagaacgtgctcgacggcaagcctggctttgcccccacgccacgcaGTTGCCGATCAGGTTGGTCAACGCCCGGc                                                                                                                                                                                        >  1:365229‑M2/71‑99 (MQ=255)                                                                                                                                                 aaggacattgacctggaacgtgcgcagaacgtgctcgacggcaagcctggctttgcccccacgccacgcaGTTGCCGATCAGGTTGGTCAACGCCCGGc                                                                                                                                                                                        <  2:365226‑M2/29‑1 (MQ=255)                                                                                                                                                   aGCACGTTCTGCGCACGTTCCAGGTCAATGTCCTTCTCCCAACGGGCAATGGCCCCGGTGGCCACGCAGTTGCCGATCAGGTTGGTCAACGCCCGGCCGATCCCCATGAACCAGTCCACCGCCAGCACCAGTACCAGGCCAACCACAGGGATCGCCgg                                                                                                                           <  1:112511/158‑1 (MQ=255)                                                                                                                                                              ctcACGTCCCAGGTCAATGTCCTTCTCCCAACGGGCAATGGCCACGGTGGCCACGCAGTTGCCGATCAGGTTGGTCAACGCCCGGCCGATACCCATGAACCAGTCCACCg                                                                                                                                                                <  2:239002/108‑1 (MQ=255)                                                                                                                                                                           tCAATGTCCTTCTCCCAACGGGCAATGGCCACGGTGGCCACGCAGTTGCCGATCAGGTTGGTCAACGCCCGGCCGATACCCATGAACCAGTCCACCGCCAGCACCAGTACCAGGCCAACCACAGGGATCGCCGGTACCGCAGTCAGGGTGGCGGCAAGAATCACCAGTGCCGAGCCTGGGATGCCGTGAGCCCCCTTGGAAGTCACCAGCGACACCAGCAGGATGGTc                             >  1:918513/1‑228 (MQ=255)                                                                                                                                                                                gTCCTTCTCCCAACGGGCAATGGCCACGGTGGCCACGCAGTTGCCGATCAGGTTGGTCAACGCCCGGCCGATACCCATGAACCAGTCCACCGCCAGCACCAGTACCAGTCCAACCACAGGGATCGCCGGTACCGCAGTCATGGTGGCGGCAAGAAGCACCAGTGCCGAGCCTGGGATGCCGTGAGCCCCCtt                                                            >  1:118198/1‑192 (MQ=255)                                                                                                                                                                                 gctcgacggcaagcctggctttgcccccacgccacgcaGTTGCCGATCAGGTTGGTCAACGCCCGGCCGATACCCATGAACCAGt                                                                                                                                                                      <  1:924279‑M2/47‑1 (MQ=255)                                                                                                                                                                                 gctcgacggcaagcctggctttgcccccacgccacgcaGTTGCCGATCAGGTTGGTCAACGCCCGGCCGATACCCATGAACCAGt                                                                                                                                                                      >  2:924276‑M2/39‑85 (MQ=255)                                                                                                                                                                                  ccTTCTCCCAACGGGCAATGGCCACGGTGGCCACGCAGTTGCCGATCa                                                                                                                                                                                                          <  2:317995/48‑1 (MQ=255)                                                                                                                                                                                  ccTTCTCCCAACGGGCAATGGCCACGGTGGCCACGCAGTTGCCGATCa                                                                                                                                                                                                          >  1:317998/1‑48 (MQ=255)                                                                                                                                                                                  ccTTCTCCCAACGGGCAATGGCCACGGTGGCCACGCAGTTGCCGATCAGGTTGGTCAACGCCCGGCCGATACCCATGAACCAGTCCACCGCCAGCACCAGTACCAGGCCAACCACAGGGATCGCCGGTACCGCAGTCAGGGTGGCGGCAAGAATCACCAGTGCCGAGCCTGGGATGCCGTGAGCCCCCTTGGAAGTCACCAGCGa                                             >  2:807903/1‑205 (MQ=255)                                                                                                                                                                                  ccTTCTCCCAACGGGCAATGGCCACGGTGGCCACGCAGTTGCCGATCAGGCTGGTCAACGCCCGGCCGATAACCATGAACCAGTCCACCGCCAGCACCAGTACCAgga                                                                                                                                              >  2:184925/1‑107 (MQ=255)                                                                                                                                                                                        cccAACGGGCAATGGCCACGGTGGCCACGCAGTTGCCGATCAGGTTGGTCAACGCCCGGCCGATACCCATGAACCAGTCCACCGCCAGCACCAGTACCAGGCCAACCACAGGGATCGCCGGTACCGCAGTCAGGGTGGCGGCAAGAATCACCAGTGCCGAGCCTGGGATGCCGTGAGCCCCCTTGGAAGTCACCAGCGACACCAGCAGGATGGTCAGCAGGTCGGTCATTTCCAg         >  2:636925/1‑235 (MQ=255)                                                                                                                                                                                              gggCAATGGCCACGGTGGCCACGCAGTTGCCGATCAGGTTGGTCAACGCCCGGCCGATACCCATGAACCAGTCCACCGCCAGCACCAGTACCAGGCCAACCACAGGGATCGCCGGTACCGCAGTCAGGGTGGCGGCAAGAATCACCAGTGCCGAGCCTGGGATGCCGTGAGCCCCCTTGGAAGTCACCAGCGACACCAGCAGGATGGTCAGCAGGGCGGTCATTTCCAGTGGCGTg  >  1:213947/1‑236 (MQ=255)                                                                                                                                                                                               ggCAATGCCCCCGGTGCCCACGCAGTTGCCGATCAGGTGGGTCAACGCCCGGCCGATACCCATGAACCAGTCCACCGCCAGCACCAGTACCAg                                                                                                                                                <  2:270214/93‑1 (MQ=255)                                                                                                                                                                                                            gTGGCCACGCAGTTGCCGATCAGGTTGGTCAACGCCCGGCCGATACCCAt                                                                                                                                                                              <  2:81528/50‑1 (MQ=255)                                                                                                                                                                                                                       |                                                                                                                                                                                                                   CACCACTGAGTTGACGACGGTTGATGAGCTGATCACGGTTCGCTCCTGGAAGGGCCGGCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGTTGCTTGCGTGGCGTGGGGGCAAAGCCAGGCTTGCCGTCGAGCACGTTCTGCGCACGTTCCAGGTCAATGTCCTTCTCCCAACGGGCAATGGCCACGGTGGCCACGCAGTTGCCGATCAGGTTGGTCAACGCCCGGCCGATACCCATGAACCAGTCCACCGCCAGCACCAGTACCAGGCCAACCACAGGGATCGCCGGTACCGCAGTCAGGGTGGCGGCAAGAATCACCAGTGCCGAGCCTGGGATGCCGTGAGCCCCCTTGGAAGTCACCAGCGACACCAGCAGGATGGTCAGCAGGTCGGTCATTTCCAGTGGCGTG  >  AE015451/2571047‑2571471

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.