New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	5432919 =	31 (0.620)	3 (0.060)	3/318	NT	10.7%	coding (2345/2529 nt)	hrpB	ATP‑dependent helicase HrpB
	?	AE015451	5433100 =	21 (0.450)					coding (2164/2529 nt)	hrpB	ATP‑dependent helicase HrpB

CTGGGTCACCTGCACCGGCCGACGCGCCGGTGACAGCAGGTGCAGCTTGACCTGCTGCCGGCCATTGGCGATGCGCGGGGTGTCGGCAAGGCCGAACAGTTCTTGCAGACGCACGGCAAGAATCGGCGGGGTTTCGCTGTAATCCAGGCGGATGTTCGAGCCGGACGGCACGGCCAAATGCGCCGGGGCCTGTTCTTCCAGGCGTTGCGGCAGCGGCCAGGGCAGCAGGTTGCGCAGCATCGACGGCAAGTCCAGCGCGGCAAAGTGGCTGAGGCGCGATACTTTGCTCAGGTAAGGCTGTAACCAGTCTTCCAGGCTGGCCAGCAGGGCTTCGTCCCCCAGGTCAGGCCATTCGCTGTGGCCATCCTTCTGCAGGTCGAGCTGACGCAGCAGCGCCACACGTGCCTGCCATTGCCGCAGTTCCGGCGTCCAGGTCAGCAGGTTCA  >  AE015451/5432870‑5433315                                                                                                                                                                                                                                       |                                                                                                                                                                                                                        cTGGGTCACCTGCACCGGCCGACGCGCCGGTGACAGCAGGTGCAGCTTGACCTGCTGCCGGCCATTGGCGATGCGCGGGGTGTCGGCAAGGCCGAACAGTTCTTGCAGACGCACGGCAAGAATCGGCGGGGTTTCGCTGTAATCCAGGCGGATGTTCGAGCCGGACGGCACGGCCAAATGCGCCGGGGCCTGTTCTTCCAGGCGTTGCGGCAGCGGCCAGGGCAGCAGGTTGCgca                                                                                                                                                                                                                    >  1:558921/1‑236 (MQ=255)                 ggCCGACGCGCCGGTGACAGCAGGTGCAGCTTGACCTGCTGCCGGCCATTGGCGATGCGCGGGGTGTCGGCAAGGCCGAACAGTTCTTGCAGACGCACGGCAAGAATCGGCGGGGTTTCGCTGTAATCCAGGCGGATGTTCGAGCCGGACGGCACGGCCAAATGCGCCGGGGCCTGTTCTTCCAGGCGTTGCGGCAGCGGCCAGGGCAGCAGGTTg                                                                                                                                                                                                                        <  2:682300/216‑1 (MQ=255)                                      gggTGCAGCTTGACCTGTTGCCGGCCATTGGCGATGCGCGGGGTGTCGGCAAGGCCGAACAGTTCTTGCAGACGCACGGCAAGAATCGGCGGGGTTTCGCTGTAATCCAGGCGGATGTTCGAGCCGGACGGCACGGCCAAATGCGCCGGGGCCTGTTCTTCCAGGCGTTGCGGCAGCGGCCAGGGCAGCAGGTTGCGCAGCATCGACGGCAAGTCCAGCGCGGCAAAGTGGCTGAg                                                                                                                                                                               <  2:868535/235‑1 (MQ=255)                                             gCTTGACCTGCTGCCGGCCATTGGCGATGCGCGGGGTGTCGGCAAGGCCGAACAGTTCTTGCAGACGCACGGCAAGAATCGGCGGGGTTTCGCTGTAATCCAGGCGGATGTTCGAGCCGGACGGCACGGCCAAATGCGCCGGGGCCTGTTCTTCCAGGCGTTGCGGCAGCGGCCAGGGCAGCAGGTTGCGCAGCATCGACGGCAAGTc                                                                                                                                                                                                    <  2:674844/208‑1 (MQ=255)                                                  ACCTGCTGCCGGCCATTGGCGATGCGCGGGGTGTCGGCAAGGCCGAGCAGTTCTTGCAGACGCACGGCAAGAATCGGCGGGGTTTCGCTGTAATCCAGGCGGATGTTCGAGCCGGACGGCACGGCCAAATGCGCCGGGGCCTGTTCTTCCAGGCGTTGCGGCAGCGGCCAGGGCAGCAGGTTGCgca                                                                                                                                                                                                                    >  2:589063‑M1/1‑187 (MQ=255)                                                           CGGCCATTGGCGATGCGCGGGGTGTCGGCAAGGCCGAACAGTTCTTGCAGACGCACGGCAAGAATCGGCGGGGTTTCGCTGTAATCCAGGCGGATGTTCGAGCCGGACGGCACGGCCAAATGCGCCGGGGCCTGTTCTTCCAGGCGTTGCGGCAGCGGCCAGGGCAGCAGGTTGCGCAGCATCGACGGCAAGTCCAGCGCGGCAAAGTGGCTGAGGCGCGATACTTTGCTCAg                                                                                                                                                             >  2:406420‑M1/1‑233 (MQ=255)                                                                          cgcgGGGTGTCGGCAAGGCCGAACAGTTCCTGCAGACGCACGGCAAGAATCGGCGGGGTTTCGCTGTAATCCAGGCGGATGTTCGACCCGGACGGCACGGCCAAATGCGCCGGGGCCTGTTCTTCCAGGCGTTGCGGCAGCGGCCAGGGCAGCATGTTgc                                                                                                                                                                                                                       <  1:921965/160‑1 (MQ=255)                                                                                   tCGGCAAGGCCGAACAGTTCTTGCAGACGCACGGCAAGAATCGGCGGGGTTTCGCTGTAATCCGGGCGGATGTTCGAGCCGGACGGCACGGCCAAATGCGCCGGGGCCTGTTCTTCCAGGCGTTGCGGCAGCGGCCAGGGCAGCAGGTTGCGCAGCATCGACGGCAAGTCCAGCGCGGCAAAGTGGCTGAGGCGCGAt                                                                                                                                                                        <  2:300746/198‑1 (MQ=255)                                                                                                                     cAAGAATCGGCGGGGTTTCGCTGTAATCCAGGCGGATGTTCGAGCCGGACGGCACGGCCAAATGCGCCGGGGCCTGTTCTTCCAGGCGTTGCGGCAGCGGCCAGGGCAGCAGGTTGCGCAGCATCGACGGCAAGTCCAGCGCGGCAAAGTGGCTGAGGCGCGATACTTTGCTCAGGTAAGGCTGTAACCAGTCTTCCAGGCTGGCCAGCAGGGCTTCGTCCCCCAGGTCAGGCCAt                                                                                                <  1:604249/236‑1 (MQ=255)                                                                                                                            aacatccgcctggattacagcgaaaccccgccgattcttgccgtgcgtctgcaagaactgttcggccttgccgacaccccgcgcatcgccaatggccggcagcaggtTGCGCAGCATCGACGGCAAGTCCAGCGCGGCAAAGTGGCTGAGgc                                                                                                                                                                             >  1:397748‑M2/108‑152 (MQ=255)                                                                                                                            aacatccgcctggattacagcgaaaccccgccgattcttgccgtgcgtctgcaagaactgttcggccttgccgacaccccgcgcatcgccaatggccggcagcaggtTGCGCAGCATCGACGGCAAGTCCAGCGCGGCAAAGTGGCTGAGgc                                                                                                                                                                             <  2:397745‑M2/45‑1 (MQ=255)                                                                                                                                      tCGCTGTAATCCAGGCGGATGTTCGAGCCGGACGGCACGGCCAAATGCGCCGGGGCCTGTTCTTCCAGGCGTTGCGGCAGCGGCCAGGGCAGCAGGTTGCGCAGCATCGACGGCAAGTCCAGCGCGGCAAAGTGGCTGAGGCGCGATACTTTGCTCAGGTAAGGCTGTAACCAGTCTTCCAGGCTGGCCAGCAGGGCt                                                                                                                     <  2:583504/198‑1 (MQ=255)                                                                                                                                          ggTAATCCAGGCGGTTGTTCGAGCCGGACGGCACGGCCAAATGCGCCGGGGCCTGTTCTTCCAGGCGTGGCGGCAGCGGCCAGGGCAGCAGGTTGCGCAGCATCGACGGCAAGTCCAGCGCgg                                                                                                                                                                                            <  2:639525/122‑1 (MQ=255)                                                                                                                                                   ggCGGATGTTCGGGCCGGACGGCACGGCCAAATGCGCCGGGGCCTGTTCTTCCAGGCGTTGCGGCAGCGGCCAGGGCAGCAGGTTGCGCAGCATCGACGGCAAGTCCAGCGCGGCAAAGTGGCTGAGGCGCGATACTTTGCTCAGGTAAGGCTGTAACCAGTCTTCCAGGCTGGCCAGCAGGGCTTCGTc                                                                                                                <  2:592561/190‑1 (MQ=255)                                                                                                                                                      ggATGTTCGAGCCGGACGGCACGGCCAAATGCGCCGGGGCCTGTTCTTCCAGGCGTTGCGGCAGCGGCCAGGGCAGCAGGTTGCGCAGCATCGACGGCAAGTCCAGCGCGGCAAAGTGGCTGAGGCGCGATACTTTGCTCAGGTAAGGCTGTAACCAGTCTTCCAGGCt                                                                                                                                  >  1:369629/1‑169 (MQ=255)                                                                                                                                                      ggATGTTCGAGCCGGACGGCACGGCCAAATGCGCCGGGGCCTGTTCTTCCAGGCGTTGCGGCAGCGGCCAGGGCAGCAGGTTGCGCAGCATCGACGGCAAGTCCAGCGCGGCAAAGTGGCTGAGGCGCGATACTTTGCTCAGGTAAGGCTGTAACCAGTCTTCCAGGCt                                                                                                                                  <  2:369626/169‑1 (MQ=255)                                                                                                                                                       gATGTTCGAGCCGGACGGCACGGCCAAATGCGCCGGGGCCTGTTCTTCCAGGCGTTGCGGCAGCGGCCAGGGCAGCAGGGTGCGCAGCATCGACGGCAAGTCCAGCGCGGCAAAGTGGCTGAGGCGCGATACTTTGCTCAGGTAAGGCTGTAACCAGTCTTCCAGGCTGGCCCGCAGGGCTTCGTcccc                                                                                                             >  1:133536/1‑189 (MQ=255)                                                                                                                                                        aggTTCGAGCCGGACGGCACGGCCAAATGCGCCGGGGCCTGTTCTTCCAGGCGTTGCGGCAGCGGCCAGGGCAGCAGGTTGCGCAGCATCGACGGCAAGTCCAGCGCGGCAAAGTGGCTGAGGCGCGATACTTTGCTCAGGTAAGGCTGTAACCAGTCTTCCAGGCTGGCCAGCAGGGCt                                                                                                                     <  2:490157/178‑1 (MQ=255)                                                                                                                                                           ttCGAGCCGGACGGCACGGCCAAATGCGCCGGGGCCTGTTCTTCCAGGCGTTGCGGCAGCGGCCAGGGCAGCAGGTTGCGCAGCCTCGACGGCAAGTCCAGCGCGGCCAAGTGGCCGAGgcgg                                                                                                                                                                           >  2:212837/1‑122 (MQ=255)                                                                                                                                                            tCGAGCGGGACGGCACGGCCAAATGCGCCGGGGCCTGTTCTTCCAGGCGTTGCGGCAGAGGCAAGGGCAGCAGGTTGCGGAGCATCGACGGCAAGTCCAGCGCGGCAAAGTGGCTGAGGCGCGAt                                                                                                                                                                        <  2:486795/125‑1 (MQ=255)                                                                                                                                                            tCGAGCCGGACGGCACGGCCAAATGCGCCGGGGCCTGTTCTTCCAGGCGTTGCGGCAGCGGCCAGGGCAGCAGGTTGCGCAGCATCGACGGCAAGTCCAGCGCGGCAAAGTGGCTGAGGCGCGATACTTTGCTCAGGTAAGGCTGTAACCAGTCTTCCAGGCTGGCCAGCAGGGCTTCGTCCCCCAGGTCAGGCCATTCGCTGTGGCCATCCTTCTGCAGGTCGAGCTGAc                                                              >  2:527592/1‑231 (MQ=255)                                                                                                                                                                    gACGGCACGGCCAAATGCGCCGGGGCCTGTTCTTCCAGGCGTTGCGGCAGCGGCCAGGGCAGCAGGTTGCGCAGCATCGACGGCAAGTCCAGCGCGGCAAAGTGGCTGAGGCGCGATACTTTGCTCAGGTAAGGCTGTAACCAGTCTTCCAGGCTGGCCAGCAGGGCTTCGTCCCCCAGGTCAGGCCATTCGCTGTGGCCATCCTTCTGCAGGTCGAGCTGACGCAGCAGCGcc                                                   <  2:480556/234‑1 (MQ=255)                                                                                                                                                                      gtgcgtctgcaagaactgttcggccttgccgacaccccgcgcatcgccaatggccggcagcaggtTGCGCAGCATCGACGGCAAGTCCAGCGCGGCAAAGTGGCTGAGGCGCGATACTTTGCTCAGGTAAGGCTGTAACCAGTCTTCCAGGCTGGCCAGCAGGGCTTCGTCCCCCAGGTCAGGCCATTCGCTGTGGCCATCCTTCTGCAGGTCGAGCTGACGCAGCAGCGcc                                                   >  1:11862‑M2/66‑232 (MQ=255)                                                                                                                                                                            ggcCAAATGCGCCGGGGCCTGTTCTTCCAGGCGTTGCGGCAGCGGCCAGTGCAGCAGGTTGCGCAGCATCGACGGCAAGTCCAGCGCGGCAAAGTGGCTGAGGCGCGATACTTTGCTCAGGTAAGGCTGTAACCAGTCTTCCAGGCTGGCCAGCAGGGCt                                                                                                                     <  2:253465/160‑1 (MQ=255)                                                                                                                                                                                                    ttcCAGGCGTTGCGGCAGCGGCCAGGGCAGCAGGTTGCGCAGCATCGACGGCAAGTCCAGCGCGGCAAAGTGGCTGAGGCGCGATACTTTGCTCAGGTAAGGCTGTAACCAGTCTTCCAGGCTGGCCAGCAGGGCTTCGTCCCCCAGGTCAGGCCATTCGCTGTGGCCATCCTTCTGCAGGTCGAGCTGACGCAGCAGCGCCACACGTGCCTGCCATTGCCGCAGTTCCGGCg                    >  1:649067/1‑233 (MQ=255)                                                                                                                                                                                                                cGGCAGCGGCCAGGGCAGCAGGTTGCGCAGCATCGACGGCAAGTCCAGCGCGGCAAAGTGGCTGAGGCGCGATACTTTGCTCAGGTAAGGCTGTAACCAGTCTTCCAGGCTGGCCAGCAGGGCTTCGTCCCCCAGGTCAGGCCATTCGCTGTGGCCATCCTTCTGCAGGTCGAGCTGACGCAGCAGCGCCACACGTGCCTGCCATTGCCGCAGTTCCGGCGTCCAGGTCAGCAGGt     <  1:671540/236‑1 (MQ=255)                                                                                                                                                                                                                 ggCAGCGGCCAGGGCAGCAGGTTGCGCAGCATCGACGGCAAGTCCAGCGCGGCAAAGTGGCTGAGGCGCGATACTTTGCTCAGGTAAGGCTGTAACCAGTCTTCCAGGCTGGCCAGCAGGGCTTCGTCCCCCAGGTCAGGCCATTCGCTGTGGCCATCCTTCTGCAGGTCGAGCTGACGCAGCAGCGCCACACGTGCCTGCCATTGCCGCAGTTCCGGCGTCCAGGTCAGCAGGtt    >  1:460923/1‑236 (MQ=255)                                                                                                                                                                                                                   cAGCGGCCAGGGCAGCAGGTTGCGCAGCATCGACGGCAAGTCCAGCGCGGCAAAGTGGCTGAGGCGCGATACTTTGCTCAGGTAAGGCTGTAACCAGTCTTCCAGGCTGGCCAGCAGGGCTTCGTCCCCCAGGTCAGGCCATTCGCTGTGGCCATCCTTCTGCAGGTCGAGCTGACGCAGCAGCGCCACACGTGCCTGCCATTGCCGCAGTTCCGGCGTCCAGGTCAGCAGGTTCa  >  1:570652/1‑236 (MQ=255)                                                                                                                                                                                                                           aGGGTAGCAGGTTGCGCAGCATCGACGGAAAGTCCAGCGCGGCTAAGTGGCTGAGGCGCGATACTTTGCTCAGGTAAGGCTGTAACCAGTCTTCCAGGCTGGCCAGCAGGGCTTCGTCCCCCAGGTCAGGCCATTCGCTGTGGCAATCCTTCTGCAGGTCGAGCTGACg                                                             <  2:247825/169‑1 (MQ=255)                                                                                                                                                                                                                               cagcaggtTGCGCAGCATCGACGGCAAGTCCAGCGCGGCAAAGTGGCTGAGGCGCGATACTTTGCTCAGGTAAGGCTGTAACCAGTCTTCCAGGCTGGCCAGCAGGGCTTCGTCCCCCAGGTCAGGCCATTCGCTGTGGCCATCCTTCTGCAGGTCGAGCTGACGCAGCAGCGCCACACGCGCCTGCcag                                    >  2:192731‑M2/9‑189 (MQ=255)                                                                                                                                                                                                                                       |                                                                                                                                                                                                                        CTGGGTCACCTGCACCGGCCGACGCGCCGGTGACAGCAGGTGCAGCTTGACCTGCTGCCGGCCATTGGCGATGCGCGGGGTGTCGGCAAGGCCGAACAGTTCTTGCAGACGCACGGCAAGAATCGGCGGGGTTTCGCTGTAATCCAGGCGGATGTTCGAGCCGGACGGCACGGCCAAATGCGCCGGGGCCTGTTCTTCCAGGCGTTGCGGCAGCGGCCAGGGCAGCAGGTTGCGCAGCATCGACGGCAAGTCCAGCGCGGCAAAGTGGCTGAGGCGCGATACTTTGCTCAGGTAAGGCTGTAACCAGTCTTCCAGGCTGGCCAGCAGGGCTTCGTCCCCCAGGTCAGGCCATTCGCTGTGGCCATCCTTCTGCAGGTCGAGCTGACGCAGCAGCGCCACACGTGCCTGCCATTGCCGCAGTTCCGGCGTCCAGGTCAGCAGGTTCA  >  AE015451/5432870‑5433315

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.