New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1583196 =	78 (0.910)	5 (0.060)	4/338	NT	6.6%	coding (385/633 nt)	ttgR	Probable HTH‑type transcriptional regulator TtgR
	?	AE015451	1583247 =	68 (0.830)					coding (436/633 nt)	ttgR	Probable HTH‑type transcriptional regulator TtgR

CGGGCTCAAGCGCAGCATATCCAGCCCGGTGTCGACCCATTTTTCGACATCACCCAACAGATCGACACTGTCAGGCAGCAATAGCCAGCGCCCGATCAGGCCATCGACATAGGCAAACATGGCCACCGCCGCGCGCTCGACATCCAGCTCGCCAGGCAACTGGCCCCGGCGTACGGCATTGGCCAGCGCCAGGGTGATGCCCTTGTGGCAATCCAGCACCGCACTCTGGCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1583429‑1583196 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcgctgGCCAATGCCGTACGCCGGGGCCAGTTGCCTGGCGAGCTGGATGTCGAGCGCGCGGCGGTGGCCATGTTTGCCTATGTCGATGGCCTGATCGGGCGCTGGCTATTGCTGCCTGACAGTGTCGATCTGTTGGGTGATGTCGAAAAATGGGTCGACACCGGGCTGGATATGCTGCGCTTGAGCCCGGCTCTGCGCAAATGACACTTTGTTAAGGATTGTGAGGGAGTGTTTCCCCT  >  AE015451/1583247‑1583479                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CGGGCTCAAGCGCAGCATATCCAGCCCGGTGTCGACCCATTTTTCGACATCACCCAACAGATCGACACTGTCAGGCAGCAATAGCCAGCGCCCGATCAGGCCATCGACATAGGCAAACATGGCCACCGCCGCGCGCTCGACATCCAGCTCGCCAGGCAACTGGCCCCGGCGTACGGCATTGGCCAGCGCCAGGGTGATGCCCTTGTGGCAATCCAGCACCGCACTCTGGCGCTG                                                                                                                                                                                                                                           >  2:1185114/1‑234                      CAGCCCGGTGTCGACCCATTTTTCAACATCACCCAACAGATCGACACTGTCAGGCAGCAATAGCCAGCGCCCGATCAGGCCATCGACATAGGCAAACATGGCCACCGCCGCGCGCTCGACATCCAGCTCGCCAGGCAACTGGCCCCGGCGTACGGCATTGGCCAGCGCCAGGGTGATGCCCTTGTGGCAATCCAGCACCGCACTCTGGC                                                                                                                                                                                                                                               <  2:1441775/209‑1                                      acTTTTTCGACATCACCCAACAGATCGACCCTGTCAGGCAGCAATAGCCAGCGCCCGATCAGGCCATCGACATAGGCAAACATGGCCACCGCCGCGCGCTCGACATCCAGCTCGCCAGGCAACTGGCCCCGGCGTACGGCATTGGCCAGCGCCAGGGTGATGCCCTTGTGGCAATCCAGCACCGCACTCTGGCGCTGGCCAATG                                                                                                                                                                                                                                    <  1:142329/202‑1                                                                                    GCCAGCGCCCGATCAGGCCATCGACATAGGCAAACATGGCCACCGCCGCGCGCTCGACATCCAGCTCGCCAGGCAACTGGCCCCGGCGTACGGCATTGGCCAGCGCCAGGGTGATGCCCTTGTGGCAATCCAGCACCGCACTCTG                                                                                                                                                                                                                                                 <  1:831138/145‑1                                                                                    GCCAGCGCCCGATCAGGCCATCGACATAGGCAAACATGGCCACCGCCGCGCGCTCGACATCCAGCTCGCCAGGCAACTGGCCCCGGCGTACGGCATTGGCCAGCGCCAGGGTGATGCCCTTGTGGCAATCCAGCACCGCACTCTG                                                                                                                                                                                                                                                 >  2:831136/1‑145                                                                                           CCCGATCAGGCCATCGACATAGGCAAACATGGCCACCGCCGCGCGCTCGACATCCAGCTCGCCAGGCAACTGGCCCCGGCGTACGGCATTGGCCAGCGCCAGGGTGATGCCCTTGTGGCAATCCAGCACCGCACTCTGGCG                                                                                                                                                                                                                                              <  2:232491/141‑1                                                                                                             ATAGGCAAACCTGGCCACCGCCGCGCGCTCGACATCCAGCTCGCCAGGCAACTGGCCCCGGCGTACGGCATTGGCCAGCGCCAGGGTGATGCCCTTGTGGCAATCCAGCACCGCACTCTGGCGCTGGCCAATGCCGTACGCCGGGGCCAGTTGCCTGGCGAGCTGGATGTC                                                                                                                                                                                              <  2:496149/171‑1                                                                                                                                                                    CCCCGGCGTACGGCATTGGCCAGCGCCAGGGTGATGCCCTGGTGGCAATCCAGCACCGCACTCTGGCGCGGGCCAATGCCGTACGCCGGGGCCAGTTGCCTGGCGAGCTGGATGT                                                                                                                                                                                               <  1:1026960/115‑1                                                                                                                                                                                      agCAGCGCCAGGGTGATGCCCTTGTGGCAATCCAGCACCGCACTCTGGCGCTGGCCAATGCCGTACGCCGGGGCCAGTTGCCTGGCGAGCTGGATGTCGAGCGCGCGGCGGTGGCCATGTTTGCCTATGTCGATGGCCTGATCGGGCGCTGGCTATTGCTGCCTGACAGTGTC                                                                                                                   <  1:541970/171‑1                                                                                                                                                                                      agCAGCGCCAGGGTGATGCCCTTGTGGCAATCCAGCACCGCACTCTGGCGCTGGCCAATGCCGTACGCCGGGGCCAGTTGCCTGGCGAGCTGGATGTCGAGCGCGCGGCGGTGGCCATGTTTGCCTATGTCGATGGCCTGATCGGGCGCTGGCTATTGCTGCCTGACAGTGTC                                                                                                                   >  2:541968/3‑173                                                                                                                                                                                                                                  cgGGCGCTGGCCAATGCCGTACGCCGGGGCCAGTTGCCTGGCGAGCTGGATGTCGAGCGCGCGGCGGTGGCCATGTTTGCCTATGTCGATGGCCTGATCGGGCGCTGGCTATTGCTGCCTGACAGTGTCGATCTGTTGGGTGATGTCGAAAAATGGGTCGACACCGGGCTGGATATGCTGCGCTTGAGCCCGGCTCTGCGCAAATGAC                                    <  1:286454/206‑1                                                                                                                                                                                                                                     GCGCTGGCCAATGCCGTACGCCGGGGCCAGTTGCCTGGCGAGCTGGATGTCGAGCGCGCGGCGGTGGCCATGTTTGCCTATGTCGATGGCCTGATCGGGCGCTGGCTATTGCTGCCTGACAGTGTCGATCTGTTGGGTGATGTCGAAAAATGGGTCGACACCGGGCTGGATATGCTGCGCTTGAGCCCGGCTCTGCGCAAATGACACTTTGTTAAGGATTGTGAGGGAGTGTTTCC     <  1:603294/236‑1                                                                                                                                                                                                                                      CGCTGGCCAATGCCGTACGCTGGGGCCAGTTGCCTGGCGAGCTGGATGTCGAGCGCGCGGCGGTGGCCATGTTTGCCTATGTCGATGGCCTGATCGGGCGCTGGCTATTGCTGCCTGACAGTGTCGATCTGTTGGGTGATGCCGAAAAATGGGTCGACACCGGGCTGGATATGCTGCGCTTGAGCCCG                                                    <  1:1346301/188‑1                                                                                                                                                                                                                                      CGCTGGCCAATGCCGTACGCCGGGGCCAGTTGCCTGGCGAGCTGGATGTCGAGCGCGCGGCGGTGGCCATGTTTGCCTATGTCGATGGCCTGATCGGGCGCTGGCTATTGCTGC                                                                                                                              >  2:657971/1‑114                                                                                                                                                                                                                                        cgGGCCAAGGCCGTACGCCGGGGCAAGTGGCCTGGCGAGCTGGATGTCGAGCGCGCGGCGGTGGCCATGTTTGCCTATGTCGATGGCCTGATCGGGCGCTGGCTATTGCTGCCTGACAGTGTCGATCTGTTGGGTGATGTCGAA                                                                                              <  2:72656/142‑1                                                                                                                                                                                                                                        CTGGCCAATGCCGTACGCCGGGGTCAGTTGCCTGGCGAGCTGGATGTCGAGCGCGCGGCGGTGGCCATGTTTGCCTATGTCGATGGCCTGATCGGGCGCTGGCTATTGCTGCCTGACAGTGTCGATCTGTTGGGTGATGTCGAAAAATGGGTCGACACCGGGCTGGATATGCTGCGCTTGAGCCCGGCTCTGCGCAAATGACACTTTGTTAAGGATTGTGAGGGAGTGTTTCCCCT  <  1:36253/236‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CGGGCTCAAGCGCAGCATATCCAGCCCGGTGTCGACCCATTTTTCGACATCACCCAACAGATCGACACTGTCAGGCAGCAATAGCCAGCGCCCGATCAGGCCATCGACATAGGCAAACATGGCCACCGCCGCGCGCTCGACATCCAGCTCGCCAGGCAACTGGCCCCGGCGTACGGCATTGGCCAGCGCCAGGGTGATGCCCTTGTGGCAATCCAGCACCGCACTCTGGCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1583429‑1583196 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcgctgGCCAATGCCGTACGCCGGGGCCAGTTGCCTGGCGAGCTGGATGTCGAGCGCGCGGCGGTGGCCATGTTTGCCTATGTCGATGGCCTGATCGGGCGCTGGCTATTGCTGCCTGACAGTGTCGATCTGTTGGGTGATGTCGAAAAATGGGTCGACACCGGGCTGGATATGCTGCGCTTGAGCCCGGCTCTGCGCAAATGACACTTTGTTAAGGATTGTGAGGGAGTGTTTCCCCT  >  AE015451/1583247‑1583479

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.