New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2095608 =	57 (0.660)	3 (0.040)	3/342	NT	5.1%	coding (870/1212 nt)	alaA	glutamate‑pyruvate aminotransferase
	?	AE015451	2095638 =	56 (0.680)					coding (840/1212 nt)	alaA	glutamate‑pyruvate aminotransferase

CAAGATCCTGTACGACGAAGCCGTGCACATCAGCACCGCCTCGCTGGCTCCGGACCTGCTGTGCCTGACCTTCAACGGCTTGTCCAAGTCGTACCGGGTGGCGGGCTTCCGCTCTGGCTGGCTGATCATTTCCGGGCCCAAGCACCACGCACACAGCTACATCGAAGGCATCGACATGCTGGCCAACATGCGCCTGTGCGCCAACGTGCCGGCCCAGCATGCCATCCAGACCGCGCTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2095848‑2095608 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgggcCGGCACGTTGGCGCACAGGCGCATGTTGGCCAGCATGTCGATGCCTTCGATGTAGCTGTGTGCGTGGTGCTTGGGCCCGGAAATGATCAGCCAGCCAGAGCGGAAGCCCGCCACCCGGTACGACTTGGACAAGCCGTTGAAGGTCAGGCACAGCAGGTCCGGAGCCAGCGAGGCGGTGCTGATGTGCACGGCTTCGTCGTACAGGATCTTGTCGTAGATCTCGTCGGAGA  >  AE015451/2095638‑2095867                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CAAGATCCTGTACGACGAAGCCGTGCACATCAGCACCGCCTCGCTGGCTCCGGACCTGCTGTGCCTGTCCTTCAACGGCTTGTCCAAGTCGTACCGGGTGGCGGGCTTCCGCTCTGGCTGGCTGATCATTTCCGGGCCCAAGCACCACGCACACAGCTACATCGAAGGCATCGACATGCTGGCCAACATGCGCCTGTGCGCCAACGTGCCGGCCCAGCATGCCATCCAGACCGCGC                                                                                                                                                                                                                                             <  1:841266/236‑1     ATCCTGTACGACGAAGCCGTGCACATCAGCACCGCCTCGCTGGCTCCGGACCTGCTGTGCCTGACCTTCAACGGCTTGTCCAAGTCGTACCGGGTGGCGGGCTTCCGCTCTGGCTGGCTGATCATTTCCGGGCCCAAGCACCACGCACACAGCTACATCGAAGGCATCGACATGCTGGCCAACATGCGCCTGTGCGCCAACGTGCCGGCCCAGCATGCCATCCAGACCGCGCTGG                                                                                                                                                                                                                                          <  1:1499755/235‑1                                                                     CCTTCAACGGCTTGTCCAAGTCGTACCGGGTGGCGGGCTTCCGCTCTGGCTGGCTGATCATTTCCGGGCCCAAGCACCACGCACACAGCTACATCGAAGGCATCGACATGCTGGCCAACATGCGCCTGTGCGCCAACGTGCCGGCCCAGCATGCCATCCAGACCGCGC                                                                                                                                                                                                                                             <  2:1054062/168‑1                                                                                               CGGGTGGCGGGCTTCCGCTCTGGCTGGCTGATCATTTCCGGGCCCAAGCACCACGCACACAGCTACATCGAAGGCATCGACATGCTGGCCAACATGCGCCTGTGCGCCAACGTGCCGGCCCAGCATGCCATCCAGACCGCGC                                                                                                                                                                                                                                             <  2:325002/142‑1                                                                                                             CCGCTCTGGCTGGCTGATCATTTCCGGGCCCAAGCACCACGCACACAGCTACATCGAAGGCATCGACATGCTGGCCAACATGCGCCTGTGCGCCAACGTGCCGGCCCAGCATGCCATCCAGACCGCGCTGGGCCGGCACGTTGGCGCACAGGCGCATGTTGGCCAGCATGTCGATGCCT                                                                                                                                                                                          <  1:25482/179‑1                                                                                                                                                                        tCATCGAGATGCTGGCCAACATGCGCCTGTGCGCCAACGTGCCGGCCCAGCATGCCATCCAGACCGCGCTGGGCCGGCACGTTGGCGCACAGGCGCATGTTGGCCAGCATGTCGATGCCTTCG                                                                                                                                                                                       <  1:1062590/122‑1                                                                                                                                                                             GACATGCTGGCCAACATGCGCCTGTGCGCCACCGTGCCGGCCCAGCATGCCATCCAGACCGCGCTGGGCCGGCACGTTGGCGCACAGGCGCATGTTGGCCAGCATGTCGAT                                                                                                                                                                                              <  2:399507/111‑1                                                                                                                                                                                                                                           GCTGGGCCGGCACGTTGGCGCACAGGCGCATGTTGGCCAGCATGTCGATGCCTTCGATGTAGCTGTGTGCGTGGTGCTTGGGCCCGGAAATGATCAGCCAGCCAGAGCGGAAGCCCGCCACCCGGTACGACTTGGACAAGCCGTTGAAGGTCAGGCACAGCAGGTCCGGAGCCAGCGAGGCGGTGCTGATGTGCACGGCTTCGTCGTACAGGATCTTGTCGTAGATCTCGTCGGA    <  1:669052/235‑1                                                                                                                                                                                                                                            CTGGGCCGGCACGTTGGCGCACAGGCGCATGTTGGCCAGCATGTCGATGCCTTCGATGTAGCTGTGTGCGTGGTGCTTGGGCCCGGAAATGATCAGCCAGCCAGAGCGGAAGCCCGCCACCCGGTACGACTTGGACAAGCCGTTGAAGGTCAGGCACAGCAGGTCCGGAGCCAGCGAGGCGGTGCg                                                    >  2:58113/1‑185                                                                                                                                                                                                                                            CTGGGCCGGCACGTTGGCGCACAGGCGCATGTTGGCCAGCATGTCGATGCCTTCGATGTAGCTGTGTGCGTGGTGCTTGGGCCCGGAAATGATCAGCCAGCCAGAGCGGAAGCCCGCCACCCGGTACGACTTGGACAAGCCGTTGAAGGTCAGGCACAGCAGGTCCGGAGCCAGCGAGGCGGTGCTGATGTGCACGGCTTCGTCGTACAGGATCTTGTCGTAGATCTCGTCGGAGA  >  1:630685/1‑236                                                                                                                                                                                                                                            CTGGGCCGGCACGTTGGCGCACAGGCGCATGTTGGCCAGCATGTCGATGCCTTCGATGTAGCTGTGTGCGTGGTGCTTGGGCCCGGAAATGATCAGCCAGCCAGAGCGGAAGCCCGCCACCCGGTACGACTTGGACAAGCCGTTGAAGGTC                                                                                       <  1:1073112/151‑1                                                                                                                                                                                                                                            CTGGGCCGGCACGTTGGCGCACAGGCGCATGTTGGCCAGCATGTCGATGCCTTCGATGTAGCTGTGTGCGTGGTGCTTGGGCCCGGAAATGATCAGCCAGCCAGAGCGGAAGCCCGCCACCCGGTACGACTTGGACAAGCCGTTGAAGGTC                                                                                       >  2:1073109/1‑151                                                                                                                                                                                                                                            CTGGGCCGGCACGTTGGCGCACAGGCGCATGTTGGCCAGCATGTCGATGCCTTCCATGTAGCTGTGTGCGTGGTGCTTGGGCCCGGAAATGATCAGCCAGCCAGAGCGGAAGCCCGCCACCCGGTACGACTTGGACAAGCCGTTGAAGGTCAGGCACAGCAGGTCCGGAGCCAGCGAGGCGGTGC                                                     >  1:191830/1‑185                                                                                                                                                                                                                                                 CCGGCAGGTTGGCGCACAGGCGCATGTTGGCCAGAATGTCGATGCCTTCGATGTAGCTGTGTGCGTGGTGCTTGGGCCCGGAAATGATCAGCCAGCCAGGGCGGAAGCCCGCCACCCGGTACGACTTGGAC                                                                                                      <  1:1142127/131‑1                                                                                                                                                                                                                                                 CCGGCACGTTGGCGCACAGGCGCATGTTGGCCAGCATGTCGATGCCTTCGATGTAGCTGTGTGCGTGGTGCTTGGGCCCGGAAATGATCAGCCAGCCAGAGCGGAAGCCCGCCACCCGGTACGACTTGGACAAGCCGTTGAAGGTCAGGCACAGCAGGTCCGGAGCCAGCG                                                              <  1:727341/171‑1                                                                                                                                                                                                                                                 CCGGCACGTTGGCGCACAGGCGCATGTTGGCCAGCATGTCGATGCCTTCGATGTAGCTGTGTGCGTGGTGCTTGGGCCCGGAAATGATCAGCCAGCCAGAGCGGAAGCCCGCCACCCGGTACGACTTGGACAAGCCGTTGAAGGTCAGGCACAGCAGGTCCGGAGCCAGCG                                                              >  2:727339/1‑171                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CAAGATCCTGTACGACGAAGCCGTGCACATCAGCACCGCCTCGCTGGCTCCGGACCTGCTGTGCCTGACCTTCAACGGCTTGTCCAAGTCGTACCGGGTGGCGGGCTTCCGCTCTGGCTGGCTGATCATTTCCGGGCCCAAGCACCACGCACACAGCTACATCGAAGGCATCGACATGCTGGCCAACATGCGCCTGTGCGCCAACGTGCCGGCCCAGCATGCCATCCAGACCGCGCTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2095848‑2095608 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgggcCGGCACGTTGGCGCACAGGCGCATGTTGGCCAGCATGTCGATGCCTTCGATGTAGCTGTGTGCGTGGTGCTTGGGCCCGGAAATGATCAGCCAGCCAGAGCGGAAGCCCGCCACCCGGTACGACTTGGACAAGCCGTTGAAGGTCAGGCACAGCAGGTCCGGAGCCAGCGAGGCGGTGCTGATGTGCACGGCTTCGTCGTACAGGATCTTGTCGTAGATCTCGTCGGAGA  >  AE015451/2095638‑2095867

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.