New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | 2639792 = | 80 (0.930) | 4 (0.050) | 4/340 | NT | 5.2% | coding (865/1479 nt) | PP_2310 | Methyl‑accepting chemotaxis transducer |
? | AE015451 | 2639812 = | 69 (0.840) | coding (845/1479 nt) | PP_2310 | Methyl‑accepting chemotaxis transducer |
CGCTGCACGCCTGGCCGCCAGCATGAGCGACGTACGCCATGGCATGCTCGGCCAGCAGAGTGAAACCGACCAGGCCGCCACTGCCATCAACGAAATGTCGGCGACCGTGCACCACATTGCCCAGCACGCCGGTGCCACCCGCGATTTGTCACAAACCGCCGACACCTTGGCCGGCAGCGGCCAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/2639976‑2639792 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccaagGTGTCGGCGGTTTGTGACAAATCGCGGGTGGCACCGGCGTGCTGGGCAATGTGGTGCACGGTCGCCGACATTTCGTTGATGGCAGTGGCGGCCTGGTCGGTTTCACTCTGCTGGCCGAGCATGCCATGGCGTACGTCGCTCATGCTGGCGGCCAGGCGTGCAGCGCCCGAGTCCAGCTGTGCTGCGCTGTGGGCGACGGTGCTGACCACGCGGTGATAGGTGGACTGCATGGCG > AE015451/2639812‑2640045 CGCTGCACGCCTGGCCGCCAGCATGAGCGACGTACGCCATGGCATGCTCGGCCAGCAGAGTGAAACCGACCAGGCCGCCACTGCCATCAACGAAATGTCGGCGACCGTGCACCACATTGCCCAGCACGCCGGTGCCACCCGCGATTTGTCACCAACCGCCGACACCTTGGCCGGCAGCGGCCA > 2:24163/1‑183 TGAAACCGCCCAGGCCGCCACTGCCATCAACGAAATGTCGGCGACCGTGCACCACATTGCCCAGCACGCCGGTGCCACCCGCGATTTGTCACAAACCGCCGACACCTTGGCCGGCAGCGGCCAAGGTGTCGGCGGTTTGTGACAAATCGCGGGTGGCACCGGC < 1:963798/163‑1 CCGCCACTGCCATCAACGAAATGTCGGCGACCGTGCACCACATTGCCCAGCACGCCGGTGCCACCCGCGATTTGTCACAAACCGCCGACACCTTGGCCGGCAGCGGCCAAGGTGTCGGCGGTTTGTGACAAATCGCGGGTGGCA < 2:1208918/144‑1 CCCGCGATTTGTCACAAACCGCCGACACCTTGGCCGGCAGCGGCC < 2:412491/45‑1 acACCGCCGACACCTTGGCCGGCAGCGGCCAAGGTGTCGGCGGTTTGGGACAAATCGCGGGTGGCACCGGCGTGCTGGGCAATGTGGTGCACGGTCGCCGACATTTCG < 1:85753/106‑1 aacCCGCCGACGCCTGGGCCGGCAGCGGCCAAGGTGTCGGCGGTTTGTGACAAATCGCGGGTGGCACCGGCGTGCTGGGCAATGTGGTGCACGGTCGCCGACATTTCGTTGATGGCAGTGGCGGCCTGGTCGGT < 1:293729/131‑1 CGGCCAAGGTGTCGGCGGTTTGTGACAAATCGCGGGTGGCACCGGCGTGCTGGGCAATGTGGTGCACGGTCGCCGACATTTCGTTGATGGCAGTGGTGGCCTGGTCGGTTTCACTCTGCTGGCCGAGCATGCCATGGCGTACGTCGCTCATGCTGGCGGCCAGGCG < 1:349191/166‑1 CGGCCAAGGTGTCGGCGGTTTGTGACAAATCGCGGGTGGCACCGGCGTGCTGGGCAATGTGGTGCACGGTCGCCGACATTTCGTTGATGGCAGTGGCGGCCTGGTCGGTTTCACTCTGCTGGCCGAGCATGCCATGGCGTACGTCGCTCATGCTGGCGGCCAGGCGTGCAGCGCCCGAGTCCAGCTGTGCTGCGCTGTGGGCGACGGTGCTGACCACGCGGTGATAGGTGGACTGC < 1:504039/236‑1 CGGCCAAGGTGTCGGCGGTTTGTGACAAATCGCGGGTGGCACCGGCGTGCTGGGCAATGTGGTGCACGGTCGCCGACATTTCGTTGATGGCAGTGGCGGCCTGGTCGGTTTCACTCTGCTGGCCGAGCATGCCATGGCGTACGTCGCTCATGCTGGCGGCCAGGCGTGCAGCGCCCGAGTC < 1:656730/181‑1 AGGTGTCGGCGGTTTGTGACAAATCGCGGGTGGCACCGGCGTGCTGGGCAATGTGGTGCACGGTCGCCGACATTTCGTTGATGGCAGTGGCGGCCTGGTCGGTTTCACTCTGCTGGCCGAGCATGCCATGGCGTACGTCGCTCATGCTGGCGGCCAGGCGTGCAGCGCCCGAGTCCAGCTGTGCTGCGCTGTGGGCGACGGTGCTGACCACGCGGTGATAGGTGGACTGCATGGCG < 1:262103/236‑1 CGCTGCACGCCTGGCCGCCAGCATGAGCGACGTACGCCATGGCATGCTCGGCCAGCAGAGTGAAACCGACCAGGCCGCCACTGCCATCAACGAAATGTCGGCGACCGTGCACCACATTGCCCAGCACGCCGGTGCCACCCGCGATTTGTCACAAACCGCCGACACCTTGGCCGGCAGCGGCCAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/2639976‑2639792 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccaagGTGTCGGCGGTTTGTGACAAATCGCGGGTGGCACCGGCGTGCTGGGCAATGTGGTGCACGGTCGCCGACATTTCGTTGATGGCAGTGGCGGCCTGGTCGGTTTCACTCTGCTGGCCGAGCATGCCATGGCGTACGTCGCTCATGCTGGCGGCCAGGCGTGCAGCGCCCGAGTCCAGCTGTGCTGCGCTGTGGGCGACGGTGCTGACCACGCGGTGATAGGTGGACTGCATGGCG > AE015451/2639812‑2640045 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |