New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3940056 =	81 (0.940)	5 (0.060)	4/342	NT	6.1%	coding (219/414 nt)	csgF	curli secretion and assembly outer membrane associated component
	?	AE015451	3940101 =	75 (0.910)					coding (174/414 nt)	csgF	curli secretion and assembly outer membrane associated component

ACGTTGCATTGCCGCCTGCCTGCTGGCCAGCGCCTGTGCTGCCCAGGCCACCGAGCTGGTGTACACCCCGGTCAACCCGGCCTTTGGCGGCAACCCGTTGAACGGCACCTGGCTGCTGAACAACGCCCAGGCGCAGAACGACTACGACGACCCGGACCTCAAGGACCGTGCCTCGGCCTTTACTGGCACCACGGCCCTTGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3940257‑3940056 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttgagGTCCGGGTCGTCGTAGTCGTTCTGCGCCTGGGCGTTGTTCAGCAGCCAGGTGCCGTTCAACGGGTTGCCGCCAAAGGCCGGGTTGACCGGGGTGTACACCAGCTCGGTGGCCTGGGCAGCACAGGCGCTGGCCAGCAGGCAGGCGGCAATGCAACGTGGAATGCGGTGGTTCATAGCTCGTCCCTCTCCAAGTCGGTGGTGTCCTGTAGCAGGCGTTGCAGCTTGCGTTGA  >  AE015451/3940101‑3940331                                                                                                                                                                                                                                                                                                                                                                                                                                                   ACGTTGCATTGCCGCCTGCCTGCTGGCCAGCGCCTGTGCTGCCCAGGCCACCGAGCTGGTGTACACCCCGGTCAACCCGGCCTTTGGCGGCAACCCGTTGAACGGCACCTGGCTGCTGAACAACGCCCAGGCGCAGAACGACTACGACGACCCGGACCTCAAGGACCGTGCCTCGGCCTTTACTGGCACCACGGCCCTTG                                                                                                                                                                                                                                           <  2:1145507/200‑1        ATTGCCGCCTGCCTGCTGGCCAGCGCCTGTGCTGCCCAGGCCACCGAGCTGGTGTACACCCCGGTCAACCCGGCCTTTGGCGGCAACCCGTTGAACGGCACCTGGCTGCTGAACAACGCCCAGGCGCAGAACGACTACGACGACCCGGACCTCAAGGACCGTGCCTCGGCCTTTACTGGCACCACGGCCC                                                                                                                                                                                                                                              >  1:1133735/1‑190                             AGCGCCTGTGCTGCCCAGGCCACCGAGCTGGTGTACACCCCGGTCAACCCGGCCTTTGGCGGCAACCCGTTGAACGGCACCTGGCTGCTGAACAACGCCCAGGCGCAGAACGACTACGACGACCCGGACCTCAAGGACCGTGCCTCGGCCTTTACTGGCACCACGGCCCTT                                                                                                                                                                                                                                            <  2:1267218/171‑1                                                       GCTGGTGTACACCCCGGTCAACCCGGCCTTTGGCGGCAACCCGTTGAACGGCACCTGGCTGCTGAACAACGCCCAGGCGCAGAACGACTACGACGACCCGGACCTCAAGGACCGTGCCTCGGCCTTTACTGGCACCACGGCCC                                                                                                                                                                                                                                              >  1:70270/1‑143                                                                                      GGCGGCACCCCGTTGAACGGCACCTGGCTGCTGAGCAACGCCCAGGCGCAGAACGACTACGACGACCCGGACCTCAAGGACCGTGCCTCGGCCTTTACTGGCACCACGGCCCTTGAGGTCCGGGTCGTCGTAGTCGTTCTGCGCCTGGGCGTTGTTCAGCAGCC                                                                                                                                                                                          <  1:466634/164‑1                                                                                      GGCGGCAACCCGTTGAACGGCACCTGGCTGCTGAACAACGCCCAGGCGCAGAACGACTACGACGACCCGGACCTCAAGGACCGTGCCTCGGCCTTTACTGGCACCACGGCCCTTGAGGTCCGGGTCGTCGTAGTCGTTCTGCGCCTGGGCGTTGTTCAGCAGCC                                                                                                                                                                                          <  1:1251613/164‑1                                                                                                       CGGCACCTGGCTGCTGAACAACGCCCAGGCGCAGAACGACTACGACGACCCGGACCTCAAGGACCGTGCCTCGGCCTTTACTGGCACCACGGCCCTTGAGGTCCGGGTCGTCGTAGTCGTTCTGCGCCTGG                                                                                                                                                                                                          <  1:337554/131‑1                                                                                                                                    CGCAGAACGACTACGACGACCCGGACCTCAAGGACCGTGCCTCGGCCTTTACTGGCCCCACGGCCCTTGAGGTCCGGGTCGTCGTAGTCGTTCTGCGCCTGGGCGTTGTTCAGCAGCCAGGTGCCGTTCAACGGGTTGCCG                                                                                                                                                                   <  1:355825/141‑1                                                                                                                                                                                              CACGGCCCTTGAGGTCCGGGTCGTCGTAGTCGTTCTGCGCCTGGGCGTTGTTCAGCAGCCAGGTGCCGTTCAACGGGTTGCCGCCAAAGGCCGGGTTGACCGGGGTGTACACCAGCTCGGTGGCCTGGGCAGCACAGGCGCTGGCCAGCAGGCAGGCGGCAATGCAACGTGGAATGCGGTGGTTCATAGCTCGTCCCTCTCCAAGTCGGTGGTGTCCT                            >  1:898996/1‑218                                                                                                                                                                                                    CCTTGAGGTCCGGGTCGTCGTAGTCGTTCTGCGCCTGGGCGTTGTTCAGCAGCCAGGTGCCGTTCAACGGGTTGCCGCCAAAGGCCGGGTTGACCGGGGTGTACACCAGCTCGGTGGCCTGGGCAGCACAGGCGCTGGCCAGCAGGCAGGCGGCAATGCAACGTGGAATGCGGTGGTTCATAGCTCGTCCCTCCCCAAGTCGGT                                    >  2:93764/1‑204                                                                                                                                                                                                      TTGAGGTCCGGGTCGTCGTAGTCGTTCTGCGCCTGGGCGTTGTTCAGCAGCCAGGTGCCGTTCAACGGGTTGCCGCCAAAGGCCGGGTTGACCGGGGTGTACACCAGCTCGGTGGCCTGGGCAGCACAGGCGCTGGCCAGCAGGCAGGCGGCAATGCAACGTGGAATGCGGTGGTTCATAGCTCGTCCCTCTCCAAGTCGGTGGTGTCCTGTAGCAGGCGTTGCAGCTTGCGTTGA  >  1:1189640/1‑236                                                                                                                                                                                                        GAGGTCCGGGTCGTCGTAGTCGTTCTGCGCCTGGGCGTTGTTCAGCAGCGAGGTGCCGTTCAACGGGTTGCCGCCAAAGGCCGGGTTGACCGGGGTGTACACCAGCTCGGTGGCCTGGGCAGCACAGGCGCTGGCCAGCAGGCAGGCGGCAATGCAACGTGGAATGCGGTGGTTCATAGCTCGTCCCTCTCCAAGTCG                                      <  2:450357/198‑1                                                                                                                                                                                                        GAGGTCCGGGTCGTCGTAGTCGGTCTGCGCCTGGGCGTTGTTCAGCAGCCAGGTGCCGTTCAACGGGTTGCCGCCAAAGGCCGGGTTGA                                                                                                                                                   <  2:461880/89‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                   ACGTTGCATTGCCGCCTGCCTGCTGGCCAGCGCCTGTGCTGCCCAGGCCACCGAGCTGGTGTACACCCCGGTCAACCCGGCCTTTGGCGGCAACCCGTTGAACGGCACCTGGCTGCTGAACAACGCCCAGGCGCAGAACGACTACGACGACCCGGACCTCAAGGACCGTGCCTCGGCCTTTACTGGCACCACGGCCCTTGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3940257‑3940056 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttgagGTCCGGGTCGTCGTAGTCGTTCTGCGCCTGGGCGTTGTTCAGCAGCCAGGTGCCGTTCAACGGGTTGCCGCCAAAGGCCGGGTTGACCGGGGTGTACACCAGCTCGGTGGCCTGGGCAGCACAGGCGCTGGCCAGCAGGCAGGCGGCAATGCAACGTGGAATGCGGTGGTTCATAGCTCGTCCCTCTCCAAGTCGGTGGTGTCCTGTAGCAGGCGTTGCAGCTTGCGTTGA  >  AE015451/3940101‑3940331

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.