| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | = 3941077 | 47 (0.550) | 3 (0.040) | 3/342 | NT | 6.2% | coding (123/531 nt) | PP_3475 | putative type II secretory pathway, pseudopilin pulG‑related signal peptide protein |
| ? | AE015451 | = 3941082 | 46 (0.560) | coding (118/531 nt) | PP_3475 | putative type II secretory pathway, pseudopilin pulG‑related signal peptide protein | |||||
CGGTGATACGGCCATCGATCGAGCGCAGCAGGCCCCATTCGTGGCTGTTGCTGATCGGGTCAGGGTAAAGCCTGCGAATGTGCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/3940842‑3941077‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgggcgAGCGCCGCCCAGCGCGACCGCGAACGCCAGTTGCTGTGGGTCGGCAGCCAGTATGCCCAAGCCTTGCGCAGCTACTACCGCGCCTCGCCAGGGCTGGCCCAGTACCCCCAGGATCTGGCCGACCTGCTACAGGACAACCGCTACCCGCAGGCCAAACGGCACATTCGCAGGCTTTACCCTGACCCGATCAGCAACAGCCACGAATGGGGCCTGCTGCGCTCGATCGATGGCCGT < AE015451/3941082‑3940849 CGGTGATACGGCCATCGATCGAGCGCAGCAGGCCCCATTCGTGGCTGTTGCTGATCGGGTCAGGGTAAAGCCTGCGAATGTGCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG < 1:1184658/236‑1CGGTGATACGGCCATCGATCGAGCGCAGCAGGCCCCATTCGTGGCTGTTGCTGATCGGGTCAGGGTAAAGCCTGCGAATGTGCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG < 1:541058/236‑1 GTGATACGGCCATCGATCGAGCGCAGCAGGCCCCATTCGTGGCTGTTGCTGATCGGGTCAGGGTAAAGCCTGCGAATGTGCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG < 2:1289891/234‑1 GCAGCAGGCCCCATTCGTGGCTGTTGCTGATCGGGTCAGGGTAAAGCCTGCGAATGTGCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG < 2:1034504/212‑1 CATTCGTGGCTGTTGCGGATCGGGTCAGGGTAAAGCCTGCGAATGTGCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG < 1:1090103/201‑1 GTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG < 2:414342/152‑1 GGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG > 1:3719/1‑115 GGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG < 2:3719/115‑1 CTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG < 2:874121/106‑1 GCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGAGCGCCGCCCAGCGCGACCGCGAACGCCAGTTGCTGTGGGTCGGCAGCCAGTATGCCCAAGCCTTGCGCAGCTACTACCGCGCCTCGCCAGGGCTGGCCCAGTACCCCCAGGATCTGGCCGACCT < 1:1423971/176‑1 CGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGAGCGCCGCCCAGCGCGACCGCGAACGCCAGTTGCTGTGGGTCGGCAGCCAGTATGCCCAAGCCTTGCGCAGCTACTACCGCGCCTCGCCAGGGCTGGCCCAGTACCCCCAGGATCT > 2:1423968/1‑154 AGCAACTGGCGTTCGCGGTCGCGCTGGGCGAGCGCCGCCCAGCGCGACCGCGAACGCCCGTTGCTGTGGGTCGGCAGCCAGca > 2:206490/1‑81 TGGGCGAGCGCCGCCCAGCGCGACCGCGAACGCCAGTTGCTGTGGGTCGGCAGCCAGTATGCCCAAGCCTTGCGCAGCTACTACCGCGCCTCGCCAGGGCTGGCCCAGTACCCCCAGGATCTGGCCGACCTGCTACAGGACAACCGCTACCCGCAGGCCAAACGGCACATTCGCAGGCTTTACCCTGACCCGATCAGCAACAGCCACGAATGGGGCCTGCTGCGCTCGATCGATGG < 1:415791/236‑1 GAGCGCCGCCCAGCGCGACCGCGAACGCCAGTTGCTGTGGGTCGGCAGCCAGTATGCCCAAGCCTTGCGCAGCTACTACCGCGCCTCGCCAGGGCTGGCCCAGTACCCCCAGGATCTGGCCGACCTGCTACAGGACAACCGCTACCCGCAGGCCAAACGGCACATTCGCAGGCTTTACCCTGACCCGATCAGCAACAGCCACGAATGGGGCCTGCTGCGCTCGATCGATGGCCGT > 1:1246985/1‑235 GAGCGCCGCCCAGCGCGACCGCGAACGCCAGTTGCTGTGGGTCGGCAGCCAGTATGCCCAAGCCTTGCGCAGCTACTACCGCGCCTCGCCAGGGCTGGCCCAGTACCCCCAGGATCTGGCCGACCTGCTACAGGACAACCGCTACCCGCAGGCCAAACGGCACATTCGCAGGCTTTACCCTGACCCGATCAGCAACAGCCACGAATGGGGCCTGCTGCGCTCGATCGATGGCCGT > 1:35511/1‑235 GAGCGCCGCCCAGCGCGACCGCGAACGCCAGTTGCTGTGGGTCGGCAGCCAGTATGCCCAAGCCTTGCGCAGCTACTACCGCGCCTCGCCAGGGCTGGCCCAGTACCCCCAGGATCTGGCCGACCTGCTACAGGACAACCGCTACCCGCAGGCCAAACGGCACATTCGCAGGCTTTACCCTGACCCGATCAGCAACAGCCACGAATGGGGCCTGCTGC > 1:923719/1‑218 CGGTGATACGGCCATCGATCGAGCGCAGCAGGCCCCATTCGTGGCTGTTGCTGATCGGGTCAGGGTAAAGCCTGCGAATGTGCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/3940842‑3941077‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgggcgAGCGCCGCCCAGCGCGACCGCGAACGCCAGTTGCTGTGGGTCGGCAGCCAGTATGCCCAAGCCTTGCGCAGCTACTACCGCGCCTCGCCAGGGCTGGCCCAGTACCCCCAGGATCTGGCCGACCTGCTACAGGACAACCGCTACCCGCAGGCCAAACGGCACATTCGCAGGCTTTACCCTGACCCGATCAGCAACAGCCACGAATGGGGCCTGCTGCGCTCGATCGATGGCCGT < AE015451/3941082‑3940849 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |