New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3941077	47 (0.550)	3 (0.040)	3/342	NT	6.2%	coding (123/531 nt)	PP_3475	putative type II secretory pathway, pseudopilin pulG‑related signal peptide protein
	?	AE015451	= 3941082	46 (0.560)					coding (118/531 nt)	PP_3475	putative type II secretory pathway, pseudopilin pulG‑related signal peptide protein

ACGGCCATCGATCGAGCGCAGCAGGCCCCATTCGTGGCTGTTGCTGATCGGGTCAGGGTAAAGCCTGCGAATGTGCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCGGCCACGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGGTGTGTTG  >  AE015451/3940849‑3941315                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                          aCGGCCATCGATCGAGCGCAGCAGGCCCCATTCGTGGCTGTTGCTGATCGGGTCAGGGTAAAGCCTGCGAATGTGCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTc                                                                                                                                                                                                                                          >  1:1246985‑M2/1‑234 (MQ=255) aCGGCCATCGATCGAGCGCAGCAGGCCCCATTCGTGGCTGTTGCTGATCGGGTCAGGGTAAAGCCTGCGAATGTGCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTc                                                                                                                                                                                                                                          >  1:35511‑M2/1‑234 (MQ=255)     ccATCGATCGAGCGCAGCAGGCCCCATTCGTGGCTGTTGCTGATCGGGTCAGGGTAAAGCCTGCGAATGTGCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTcgccca                                                                                                                                                                                                                                     <  1:415791‑M2/236‑7 (MQ=255)                  gcagcaGGCCCCATTCGTGGCTGTTGCTGATCGGGTCAGGGTAAAGCCTGCGAATGTGCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTc                                                                                                                                                                                                                                          >  1:923719‑M2/1‑217 (MQ=255)                         gCCCCATTCGTGGCTGTTGCTGATCGGGTCAGGGTAAAGCCTGCGAATGTGCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCa                                                                                                                                                                                                                 <  1:503613/236‑1 (MQ=255)                              aTTCGTGGCTGTTGCTGATCGGGTCAGGGTAAAGCCTGCGAATGTGCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTg                                                                                                                                                                                                                              >  2:549773/1‑218 (MQ=255)                              aTTCGTGGCTGTTGCTGATCGGGTCAGGGTAAAGCCTGCGAATGTGCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGcc                                                                                                                                                                                                            <  1:1422970/236‑1 (MQ=255)                              aTTCGTGGCTGTTGCTGATCGGGTCAGGGTAAAGCCTGCGAATGTGCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGc                                                                                                                                                                                                             >  1:378449/1‑235 (MQ=255)                                     gCTGTTGCTGATCGGGTCAGGGTAAAGCCTGCGAATGTGCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACgctgc                                                                                                                                                                                                     <  1:694934/236‑1 (MQ=255)                                        gTTGCTGATCGGGTCAGGGTAAAGCCTGCGAATGTGCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGac                                                                                                                                                                                                                                  >  1:211113/1‑203 (MQ=255)                                          tGCTGATCGGGTCAGGGTAAAGCCTGCGAATGTGCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGAcc                                                                                                                                                                                                <  1:549775/236‑1 (MQ=255)                                                       aGGGTAAAGCCTGCGAATGTGCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATcagca                                                                                                                                                                                      >  2:1285772/1‑233 (MQ=255)                                                                      aaTGTGCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAAt                                                                                                                                                                                           >  2:786913/1‑213 (MQ=255)                                                                      aaTGTGCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAAt                                                                                                                                                                                           <  1:786915/213‑1 (MQ=255)                                                                         gtgCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTaa                                                                                                                                                                 <  1:41075/236‑1 (MQ=255)                                                                               tttGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAgccg                                                                                                                                                            <  1:1021525/235‑1 (MQ=255)                                                                                 tGGCATGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAgccgcc                                                                                                                                                          <  1:566853/235‑1 (MQ=255)                                                                                   gCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGt                                                                                                                                                        <  1:934582/235‑1 (MQ=255)                                                                                   gCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGt                                                                                                                                                        <  1:1273538/235‑1 (MQ=255)                                                                                      tGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTg                                                                                                                                                      <  2:537284/234‑1 (MQ=255)                                                                                        cGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGcc                                                                                                                                                   <  1:520271/235‑1 (MQ=255)                                                                                          ggTAGCGGTGGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAAt                                                                                                                                                                                           <  2:378447/193‑1 (MQ=255)                                                                                                 ggtGTCCTGTAGCAGGGCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATcagca                                                                                                                                                                                      <  2:273431/189‑1 (MQ=255)                                                                                                   tGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGc                                                                                                                                       <  1:1285775/236‑1 (MQ=255)                                                                                                       cTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGaa                                                                                                                                    >  2:730342/1‑235 (MQ=255)                                                                                                        tGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAag                                                                                                                                   >  2:1150625/1‑235 (MQ=255)                                                                                                              aGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTcgcccagcgcgaccgcgaacgccagttgctgtgggtcggcagccagtatgc                                                                                                                                                                                        <  1:1423971‑M2/176‑52 (MQ=255)                                                                                                                gTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCa                                                                                                                          <  1:1422072/236‑1 (MQ=255)                                                                                                                  cGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTCGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGCGCCg                                                                                                                                                                                                                           >  2:351936/1‑137 (MQ=255)                                                                                                                   ggCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCAcccc                                                                                                                                                                            >  2:710560/1‑183 (MQ=255)                                                                                                                   ggCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCAcccc                                                                                                                                                                            <  1:710562/183‑1 (MQ=255)                                                                                                                    gCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTaa                                                                                                                                               >  2:1410996/1‑210 (MQ=255)                                                                                                                       aGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTcgcccagcgcgaccgcgaacgccagttgctgtgggtcg                                                                                                                                                                                                     >  2:1423968‑M2/1‑116 (MQ=255)                                                                                                                         agccTGCGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCAcgc                                                                                                                    <  1:796984/231‑1 (MQ=255)                                                                                                                                               ccTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCCCAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCAc                                                                                                                                                                               <  1:136687/152‑1 (MQ=255)                                                                                                                                                cTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCCGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATg                                                                                                                                                                    >  2:158747/1‑162 (MQ=255)                                                                                                                                                cTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCGCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGCCCg                                                                                                                                                                                               >  2:251423/1‑135 (MQ=255)                                                                                                                                                      aGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTAAcc                                                                                                                                              >  2:116036/1‑178 (MQ=255)                                                                                                                                                           cgGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATcag                                                                                                                                                                                        >  2:1043865/1‑131 (MQ=255)                                                                                                                                                             gtagtaGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCg                                                                                                                                      <  1:1275514/179‑1 (MQ=255)                                                                                                                                                                gtagCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCGGcc                                                                                   <  1:25232/227‑1 (MQ=255)                                                                                                                                                                    cTGCGCAAGGCTGGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCCGATCGTGCCGGTGgccgccg                                                                                                                                                                                                                 >  2:460675/1‑96 (MQ=255)                                                                                                                                                                           aGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTACCGGTGGCCGCCAGGGCCCCGCTGCTGACCGCAATcagcagcag                                                                                                                                                                                  >  2:259989/1‑121 (MQ=255)                                                                                                                                                                            ggCTCGGGCCTACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAgccg                                                                                                                                                            <  2:639440/142‑1 (MQ=255)                                                                                                                                                                              agtGGGCCTACTGTCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCAcgc                                                                                                                    <  1:376723/178‑1 (MQ=255)                                                                                                                                                                                      tgctgGCTGCCGACCCACAGCAACGGGCGTTCGCGGTCGCGCTGGGCGGCGCTcgcccagcgcgaccgcgaacgccagttgct                                                                                                                                                                                                             >  2:206490‑M2/3‑53 (MQ=255)                                                                                                                                                                                         tGGCTGCCGCCCCCCAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGcc                                                                                                                                                   <  2:217868/138‑1 (MQ=255)                                                                                                                                                                                         tGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCtg                                                                                                          <  1:1313771/179‑1 (MQ=255)                                                                                                                                                                                              gCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGa                                                                                                                                     >  2:376721/1‑147 (MQ=255)                                                                                                                                                                                                          cAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCGGCCACGCCGCCCGCca                                                                      >  2:176337/1‑198 (MQ=255)                                                                                                                                                                                                              gggCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCGGCCACGCCGCCCGCCACACCCTCggg                                                            <  1:1182216/203‑1 (MQ=255)                                                                                                                                                                                                                       cgGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCGGCCACGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCg                   >  1:786172/1‑236 (MQ=255)                                                                                                                                                                                                                              gcTGGGCGGCGCTCGCCCAGATCGGGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCGGCCACGCCGCCCGCCACACCCTCGggcggc                                                        <  2:53937/192‑1 (MQ=255)                                                                                                                                                                                                                                tGGGCGGCGCTCGCCCAGATCGTGCCCGCGGCCGCCAGGGCCACGCTGCTGACCGCACTCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCCTACCACTCAGCGAAGAGGCTGCCCTCAcg                                                                                                                     >  2:171667/1‑129 (MQ=255)                                                                                                                                                                                                                                      gcgcTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCGGCCACGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGgtgtgt    <  1:942459/236‑1 (MQ=255)                                                                                                                                                                                                                                       cgcTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCGGCCACGCCGCCCGCCACACCCTCgg                                                             >  2:1365818/1‑178 (MQ=255)                                                                                                                                                                                                                                          tCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCGGCCACGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCgg                         >  1:1023004/1‑211 (MQ=255)                                                                                                                                                                                                                                          tCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCGGCCACGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGGTGTGTTg  <  1:905637/234‑1 (MQ=255)                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                          ACGGCCATCGATCGAGCGCAGCAGGCCCCATTCGTGGCTGTTGCTGATCGGGTCAGGGTAAAGCCTGCGAATGTGCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCGGCCACGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGGTGTGTTG  >  AE015451/3940849‑3941315

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.