New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3941077	47 (0.550)	3 (0.040)	3/342	NT	6.2%	coding (123/531 nt)	PP_3475	putative type II secretory pathway, pseudopilin pulG‑related signal peptide protein
	?	AE015451	= 3941082	46 (0.560)					coding (118/531 nt)	PP_3475	putative type II secretory pathway, pseudopilin pulG‑related signal peptide protein

CGGTGATACGGCCATCGATCGAGCGCAGCAGGCCCCATTCGTGGCTGTTGCTGATCGGGTCAGGGTAAAGCCTGCGAATGTGCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCGGCCACGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGGTGT  >  AE015451/3940842‑3941311                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                           cGGTGATACGGCCATCGATCGAGCGCAGCAGGCCCCATTCGTGGCTGTTGCTGATCGGGTCAGGGTAAAGCCTGCGAATGTGCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG                                                                                                                                                                                                                                            <  1:1184658‑M1/236‑1 (MQ=255) cGGTGATACGGCCATCGATCGAGCGCAGCAGGCCCCATTCGTGGCTGTTGCTGATCGGGTCAGGGTAAAGCCTGCGAATGTGCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG                                                                                                                                                                                                                                            <  1:541058‑M1/236‑1 (MQ=255)   gTGATACGGCCATCGATCGAGCGCAGCAGGCCCCATTCGTGGCTGTTGCTGATCGGGTCAGGGTAAAGCCTGCGAATGTGCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG                                                                                                                                                                                                                                            <  2:1289891‑M1/234‑1 (MQ=255)        aCGGCCATCGATCGAGCGCAGCAGGCCCCATTCGTGGCTGTTGCTGATCGGGTCAGGGTAAAGCCTGCGAATGTGCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTc                                                                                                                                                                                                                                      >  1:1246985‑M2/1‑234 (MQ=255)        aCGGCCATCGATCGAGCGCAGCAGGCCCCATTCGTGGCTGTTGCTGATCGGGTCAGGGTAAAGCCTGCGAATGTGCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTc                                                                                                                                                                                                                                      >  1:35511‑M2/1‑234 (MQ=255)            ccATCGATCGAGCGCAGCAGGCCCCATTCGTGGCTGTTGCTGATCGGGTCAGGGTAAAGCCTGCGAATGTGCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTcgccca                                                                                                                                                                                                                                 <  1:415791‑M2/236‑7 (MQ=255)                         gcagcaGGCCCCATTCGTGGCTGTTGCTGATCGGGTCAGGGTAAAGCCTGCGAATGTGCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTc                                                                                                                                                                                                                                      >  1:923719‑M2/1‑217 (MQ=255)                         gcagcaGGCCCCATTCGTGGCTGTTGCTGATCGGGTCAGGGTAAAGCCTGCGAATGTGCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG                                                                                                                                                                                                                                            <  2:1034504‑M1/212‑1 (MQ=255)                                gCCCCATTCGTGGCTGTTGCTGATCGGGTCAGGGTAAAGCCTGCGAATGTGCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCa                                                                                                                                                                                                             <  1:503613/236‑1 (MQ=255)                                    cATTCGTGGCTGTTGCGGATCGGGTCAGGGTAAAGCCTGCGAATGTGCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG                                                                                                                                                                                                                                            <  1:1090103‑M1/201‑1 (MQ=255)                                     aTTCGTGGCTGTTGCTGATCGGGTCAGGGTAAAGCCTGCGAATGTGCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTg                                                                                                                                                                                                                          >  2:549773/1‑218 (MQ=255)                                     aTTCGTGGCTGTTGCTGATCGGGTCAGGGTAAAGCCTGCGAATGTGCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGcc                                                                                                                                                                                                        <  1:1422970/236‑1 (MQ=255)                                     aTTCGTGGCTGTTGCTGATCGGGTCAGGGTAAAGCCTGCGAATGTGCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGc                                                                                                                                                                                                         >  1:378449/1‑235 (MQ=255)                                            gCTGTTGCTGATCGGGTCAGGGTAAAGCCTGCGAATGTGCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACgctgc                                                                                                                                                                                                 <  1:694934/236‑1 (MQ=255)                                               gTTGCTGATCGGGTCAGGGTAAAGCCTGCGAATGTGCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGac                                                                                                                                                                                                                              >  1:211113/1‑203 (MQ=255)                                                 tGCTGATCGGGTCAGGGTAAAGCCTGCGAATGTGCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGAcc                                                                                                                                                                                            <  1:549775/236‑1 (MQ=255)                                                              aGGGTAAAGCCTGCGAATGTGCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATcagca                                                                                                                                                                                  >  2:1285772/1‑233 (MQ=255)                                                                             aaTGTGCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAAt                                                                                                                                                                                       >  2:786913/1‑213 (MQ=255)                                                                             aaTGTGCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAAt                                                                                                                                                                                       <  1:786915/213‑1 (MQ=255)                                                                                gtgCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTaa                                                                                                                                                             <  1:41075/236‑1 (MQ=255)                                                                                     gTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG                                                                                                                                                                                                                                            <  2:414342‑M1/152‑1 (MQ=255)                                                                                      tttGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAgccg                                                                                                                                                        <  1:1021525/235‑1 (MQ=255)                                                                                        tGGCATGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAgccgcc                                                                                                                                                      <  1:566853/235‑1 (MQ=255)                                                                                          gCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGt                                                                                                                                                    <  1:934582/235‑1 (MQ=255)                                                                                          gCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGt                                                                                                                                                    <  1:1273538/235‑1 (MQ=255)                                                                                             tGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTg                                                                                                                                                  <  2:537284/234‑1 (MQ=255)                                                                                               cGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGcc                                                                                                                                               <  1:520271/235‑1 (MQ=255)                                                                                                 ggTAGCGGTGGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAAt                                                                                                                                                                                       <  2:378447/193‑1 (MQ=255)                                                                                                        ggtGTCCTGTAGCAGGGCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATcagca                                                                                                                                                                                  <  2:273431/189‑1 (MQ=255)                                                                                                          tGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGc                                                                                                                                   <  1:1285775/236‑1 (MQ=255)                                                                                                              cTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGaa                                                                                                                                >  2:730342/1‑235 (MQ=255)                                                                                                               tGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAag                                                                                                                               >  2:1150625/1‑235 (MQ=255)                                                                                                                     aGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTcgcccagcgcgaccgcgaacgccagttgctgtgggtcggcagccagtatgc                                                                                                                                                                                    <  1:1423971‑M2/176‑52 (MQ=255)                                                                                                                       gTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCa                                                                                                                      <  1:1422072/236‑1 (MQ=255)                                                                                                                         cGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTCGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGCGCCg                                                                                                                                                                                                                       >  2:351936/1‑137 (MQ=255)                                                                                                                          ggCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCAcccc                                                                                                                                                                        <  1:710562/183‑1 (MQ=255)                                                                                                                          ggCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCAcccc                                                                                                                                                                        >  2:710560/1‑183 (MQ=255)                                                                                                                          ggCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG                                                                                                                                                                                                                                            <  2:3719‑M1/115‑1 (MQ=255)                                                                                                                          ggCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG                                                                                                                                                                                                                                            >  1:3719‑M1/1‑115 (MQ=255)                                                                                                                           gCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTaa                                                                                                                                           >  2:1410996/1‑210 (MQ=255)                                                                                                                              aGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTcgcccagcgcgaccgcgaacgccagttgctgtgggtcg                                                                                                                                                                                                 >  2:1423968‑M2/1‑116 (MQ=255)                                                                                                                                agccTGCGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCAcgc                                                                                                                <  1:796984/231‑1 (MQ=255)                                                                                                                                   cTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCG                                                                                                                                                                                                                                            <  2:874121‑M1/106‑1 (MQ=255)                                                                                                                                                      ccTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCCCAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCAc                                                                                                                                                                           <  1:136687/152‑1 (MQ=255)                                                                                                                                                       cTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCCGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATg                                                                                                                                                                >  2:158747/1‑162 (MQ=255)                                                                                                                                                       cTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCGCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGCCCg                                                                                                                                                                                           >  2:251423/1‑135 (MQ=255)                                                                                                                                                             aGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTAAcc                                                                                                                                          >  2:116036/1‑178 (MQ=255)                                                                                                                                                                  cgGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATcag                                                                                                                                                                                    >  2:1043865/1‑131 (MQ=255)                                                                                                                                                                    gtagtaGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCg                                                                                                                                  <  1:1275514/179‑1 (MQ=255)                                                                                                                                                                       gtagCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCGGcc                                                                               <  1:25232/227‑1 (MQ=255)                                                                                                                                                                           cTGCGCAAGGCTGGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCCGATCGTGCCGGTGgccgccg                                                                                                                                                                                                             >  2:460675/1‑96 (MQ=255)                                                                                                                                                                                  aGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTACCGGTGGCCGCCAGGGCCCCGCTGCTGACCGCAATcagcagcag                                                                                                                                                                              >  2:259989/1‑121 (MQ=255)                                                                                                                                                                                   ggCTCGGGCCTACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAgccg                                                                                                                                                        <  2:639440/142‑1 (MQ=255)                                                                                                                                                                                     agtGGGCCTACTGTCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCAcgc                                                                                                                <  1:376723/178‑1 (MQ=255)                                                                                                                                                                                          gCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGagcgccgcccagcgcgaccgcgaacgccagttgctgtgggtcggcagccagtatgcccaagccttgcgcagctactaccgcgcctcgccagggctggcccagtacccccaggatctggccgacct                                                                                                               <  1:1423971‑M1/176‑126 (MQ=255)                                                                                                                                                                                             tgctgGCTGCCGACCCACAGCAACGGGCGTTCGCGGTCGCGCTGGGCGGCGCTcgcccagcgcgaccgcgaacgccagttgct                                                                                                                                                                                                         >  2:206490‑M2/3‑53 (MQ=255)                                                                                                                                                                                                tGGCTGCCGCCCCCCAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGcc                                                                                                                                               <  2:217868/138‑1 (MQ=255)                                                                                                                                                                                                tGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCtg                                                                                                      <  1:1313771/179‑1 (MQ=255)                                                                                                                                                                                                     gCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGa                                                                                                                                 >  2:376721/1‑147 (MQ=255)                                                                                                                                                                                                       cGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGagcgccgcccagcgcgaccgcgaacgccagttgctgtgggtcggcagccagtatgcccaagccttgcgcagctactaccgcgcctcgccagggctggcccagtacccccaggatct                                                                                                                        >  2:1423968‑M1/1‑38 (MQ=255)                                                                                                                                                                                                               aGCAACTGGCGTTCGCGGTCGCGCTGGGCGagcgccgcccagcgcgaccgcgaacgcccgttgctgtgggtcggcagccagca                                                                                                                                                                                       >  2:206490‑M1/1‑30 (MQ=255)                                                                                                                                                                                                                 cAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCGGCCACGCCGCCCGCca                                                                  >  2:176337/1‑198 (MQ=255)                                                                                                                                                                                                                     gggCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCGGCCACGCCGCCCGCCACACCCTCggg                                                        <  1:1182216/203‑1 (MQ=255)                                                                                                                                                                                                                              cgGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCGGCCACGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCg               >  1:786172/1‑236 (MQ=255)                                                                                                                                                                                                                                     gcTGGGCGGCGCTCGCCCAGATCGGGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCGGCCACGCCGCCCGCCACACCCTCGggcggc                                                    <  2:53937/192‑1 (MQ=255)                                                                                                                                                                                                                                       tGGGCGagcgccgcccagcgcgaccgcgaacgccagttgctgtgggtcggcagccagtatgcccaagccttgcgcagctactaccgcgcctcgccagggctggcccagtacccccaggatctggccgacctgctacaggacaaccgctacccgcaggccaaacggcacattcgcaggctttaccctgacccgatcagcaacagccacgaatggggcctgctgcgctcgatcgatgg      <  1:415791‑M1/236‑231 (MQ=255)                                                                                                                                                                                                                                       tGGGCGGCGCTCGCCCAGATCGTGCCCGCGGCCGCCAGGGCCACGCTGCTGACCGCACTCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCCTACCACTCAGCGAAGAGGCTGCCCTCAcg                                                                                                                 >  2:171667/1‑129 (MQ=255)                                                                                                                                                                                                                                            gagcgccgcccagcgcgaccgcgaacgccagttgctgtgggtcggcagccagtatgcccaagccttgcgcagctactaccgcgcctcgccagggctggcccagtacccccaggatctggccgacctgctacaggacaaccgctacccgcaggccaaacggcacattcgcaggctttaccctgacccgatcagcaacagccacgaatggggcctgctgcgctcgatcgatggccgt  >  1:35511‑M1/1‑1 (MQ=255)                                                                                                                                                                                                                                            gagcgccgcccagcgcgaccgcgaacgccagttgctgtgggtcggcagccagtatgcccaagccttgcgcagctactaccgcgcctcgccagggctggcccagtacccccaggatctggccgacctgctacaggacaaccgctacccgcaggccaaacggcacattcgcaggctttaccctgacccgatcagcaacagccacgaatggggcctgctgcgctcgatcgatggccgt  >  1:1246985‑M1/1‑1 (MQ=255)                                                                                                                                                                                                                                            gagcgccgcccagcgcgaccgcgaacgccagttgctgtgggtcggcagccagtatgcccaagccttgcgcagctactaccgcgcctcgccagggctggcccagtacccccaggatctggccgacctgctacaggacaaccgctacccgcaggccaaacggcacattcgcaggctttaccctgacccgatcagcaacagccacgaatggggcctgctgc                   >  1:923719‑M1/1‑1 (MQ=255)                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                           CGGTGATACGGCCATCGATCGAGCGCAGCAGGCCCCATTCGTGGCTGTTGCTGATCGGGTCAGGGTAAAGCCTGCGAATGTGCCGTTTGGCCTGCGGGTAGCGGTTGTCCTGTAGCAGGTCGGCCAGATCCTGGGGGTACTGGGCCAGCCCTGGCGAGGCGCGGTAGTAGCTGCGCAAGGCTTGGGCATACTGGCTGCCGACCCACAGCAACTGGCGTTCGCGGTCGCGCTGGGCGGCGCTCGCCCAGATCGTGCCGGTGGCCGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTTGATGTCGGCCACGCCGCCCGCCACACCCTCGGGCGGCGGCACCAGCTGCCAGGCATCGCTGCGCTCGGTGATCGGGTCGACCGGTGT  >  AE015451/3940842‑3941311

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.